Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002975

Physical Location & Seq

Genomic Coordinates Forward (+)

36522392 .. 36524864

Gene Structure 2473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG181100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAGTTAGTGCACGAGACACTTAAGGATGTCTGCTTGTCATCCCCTAGAGTTGCATTGGAATTTTATCGTGCTGTTAGGGATGTACTACTTTTATATGAAGTTGTCATACCTGTCAAGCTGGAACGGCAGCTTGATGGCATCAACCAGGTTGCTGTTCTCATGCACAACGATTGCCTTTATCTATCTCAGGAGATTCTTGGGCTTGCATTTGAGTATCGCTCAGACTTTCCAACTTCAATGAAAGATCATGCTGTGTTTGTTGATATGGCTCCAAGATTTCATCTCATGGCAGAGGAAATACTGCAGAGACAAATCCAACTTGTGATTCATAGCTTGAGAGAGGCTCTAGATGGCGCTGATGGATTCCAAAATACCCATCAAATGCAACAATTCCAATCTGCAAAATTTAGTATAGATCAGGTTGTTTTCATACTGGAGAAAGTACACATTATATGGGAGCCACTCTTATTGCCTTCAACTTACAAGAGAAGCATGTGTATGGTTCTCGAGTCAGTTTTTTCTAGAATCACAAAAGACATACTCCATTTAGATGATATGGCAGCAGAAGAAACATTAGAGCTTCAAAGACTGATTCACTTGATGCTGGAAAACTTAACTTCTTTGTTGGGGTCCCTGGCTGCTCTTCAAGTTGAGAAGTCACAAGAGGGCATGGCATCTCTTGATGATCTTATACCATCATTACGAAAACTTTGGAAATTGACAGAATTATTAGATATGCCCTTGAAAACAATCACTGCAGCTTGGGAAACCGGAGAACTGCGAAATGGTGGCTTTACATCGTCAGAGGTAGAAGATTTCATCAGAGCAATTTTTCAAGACTCACCTTTGCGGAAAGACTGCTTATGGAGGGTACATGGCAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

296

Amino Acids

34.06

Weight (kDa)

5.23

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZW10_C	PF20666	1 - 115	6.9e-35	Centromere/kinetochore protein zw10, C-terminal
ZW10_C2	PF22766	138 - 292	6.9e-41	ZW10 C-terminal helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32900
fragaria_vesca	FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900
malus_domestica	MD09G1116200.v1.1 MD17G1107900.v1.1
prunus_persica	Prupe.3G208500_v2.0.a1
pyrus_communis	pycom09g04060 pycom17g10050
rosa_chinensis	RchiOBHm_Chr0c20g0500271 RchiOBHm_Chr1g0340131 RchiOBHm_Chr1g0340141 RchiOBHm_Chr2g0157781
rosa_laevigata	RLG00000021018 RLG00000028993
rosa_multiflora	Rmu_co8468091.1_g000001 Rmu_sc0001275.1_g000033 Rmu_sc0010800.1_g000004 Rmu_sc0018661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091960 Rroxscaffold_4G00311000
rosa_rugosa	Rorug02G0463300 Rorug02G0463300
rosa_samantha	Rh1AG180900 Rh1CG167700 Rh1DG181000 Rh1DG181100 Rh2AG528800 Rh2BG542700 Rh2CG513100 Rh2DG551700
rosa_wichuraiana	Rw1G015020 Rw2G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	853
AcsI	RAATTY	2 cut(s)	62, 407
AfaI	GTAC	3 cut(s)	87, 447, 876
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	6 cut(s)	240, 480, 587, 650, 748, 839
AjnI	CCWGG	2 cut(s)	147, 636
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	5 cut(s)	121, 133, 336, 583, 764
AluI	AGCT	5 cut(s)	121, 133, 336, 583, 764
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	11, 304
Alw44I	GTGCAC	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	509
ApaLI	GTGCAC	1 cut(s)	11
ApeKI	GCWGC	4 cut(s)	130, 563, 641, 761
ApoI	RAATTY	2 cut(s)	62, 407
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	633
AsuHPI	GGTGA	1 cut(s)	837
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	633
BaeGI	GKGCMC	1 cut(s)	15
BarI	GAAGNNNNNNTAC	2 cut(s)	93, 125
BauI	CACGAG	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	4 cut(s)	142, 575, 628, 773
BccI	CCATC	5 cut(s)	131, 347, 356, 387, 706
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	149, 638
BcoDI	GTCTC	2 cut(s)	11, 304
BfaI	CTAG	3 cut(s)	48, 350, 525
BfmI	CTRYAG	2 cut(s)	305, 759
BfoI	RGCGCY	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	4 cut(s)	131, 564, 642, 762
BlsI	GCNGC	4 cut(s)	132, 565, 643, 763
Bme1390I	CCNGG	2 cut(s)	149, 638
Bme18I	GGWCC	1 cut(s)	633
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	633
BmiI	GGNNCC	4 cut(s)	273, 462, 634, 635
BmrFI	CCNGG	2 cut(s)	149, 638
BmsI	GCATC	3 cut(s)	150, 594, 686
BplI	GAGNNNNNCTC	4 cut(s)	206, 238, 331, 363
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	636
BsaWI	WCCGGW	1 cut(s)	773
Bse1I	ACTGG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	149, 638
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	3 cut(s)	34, 41, 88
BseMII	CTCAG	2 cut(s)	203, 237
BseNI	ACTGG	1 cut(s)	441
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	4 cut(s)	142, 575, 628, 773
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	774
BslFI	GGGAC	1 cut(s)	619
BsmAI	GTCTC	2 cut(s)	11, 304
BsmFI	GGGAC	1 cut(s)	619
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	3 cut(s)	247, 418, 688
BspACI	CCGC	1 cut(s)	853
BspCNI	CTCAG	2 cut(s)	202, 236
BspLI	GGNNCC	4 cut(s)	273, 462, 634, 635
BspMAI	CTGCAG	2 cut(s)	309, 763
BspQI	GCTCTTC	1 cut(s)	651
BspTI	CTTAAG	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	3 cut(s)	247, 418, 688
BssSI	CACGAG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	2 cut(s)	149, 638
Bst6I	CTCTTC	1 cut(s)	651
BstAFI	CTTAAG	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	189, 223
BstF5I	GGATG	3 cut(s)	34, 41, 88
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	3 cut(s)	250, 421, 691
BstMAI	GTCTC	2 cut(s)	11, 304
BstMBI	GATC	3 cut(s)	247, 418, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	2 cut(s)	149, 638
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	2 cut(s)	147, 636
BstSFI	CTRYAG	2 cut(s)	305, 759
BstSLI	GKGCMC	1 cut(s)	15
BstV1I	GCAGC	4 cut(s)	142, 575, 628, 773
BtsCI	GGATG	3 cut(s)	34, 41, 88
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	633
CsiI	ACCWGGT	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	86, 446, 875
CspCI	CAANNNNNGTGG	2 cut(s)	453, 488
CviAII	CATG	6 cut(s)	163, 251, 289, 496, 673, 878
CviQI	GTAC	3 cut(s)	86, 446, 875
DdeI	CTNAG	2 cut(s)	189, 223
DpnI	GATC	3 cut(s)	249, 420, 690
DpnII	GATC	3 cut(s)	247, 418, 688
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	633
EcoRII	CCWGG	2 cut(s)	147, 636
FaeI	CATG	6 cut(s)	166, 254, 292, 499, 676, 881
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	6 cut(s)	162, 250, 288, 495, 672, 877
Fnu4HI	GCNGC	4 cut(s)	131, 564, 642, 762
FokI	GGATG	3 cut(s)	28, 41, 95
Fsp4HI	GCNGC	4 cut(s)	131, 564, 642, 762
FspBI	CTAG	3 cut(s)	48, 350, 525
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	4 cut(s)	131, 564, 642, 762
GsuI	CTGGAG	1 cut(s)	458
HaeII	RGCGCY	1 cut(s)	360
HapII	CCGG	1 cut(s)	774
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	6 cut(s)	166, 254, 292, 499, 676, 881
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	7 cut(s)	196, 328, 366, 512, 528, 595, 842
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	1 cut(s)	837
Hpy166II	GTNNAC	2 cut(s)	13, 448
Hpy188I	TCNGA	3 cut(s)	226, 808, 827
Hpy188III	TCNNGA	6 cut(s)	191, 350, 509, 525, 683, 839
Hpy8I	GTNNAC	2 cut(s)	13, 448
HpyAV	CCTTC	1 cut(s)	486
HpyCH4V	TGCA	8 cut(s)	13, 56, 166, 209, 307, 388, 404, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	189, 223
Hsp92II	CATG	6 cut(s)	166, 254, 292, 499, 676, 881
HspAI	GCGC	1 cut(s)	357
KflI	GGGWCCC	1 cut(s)	633
Kzo9I	GATC	3 cut(s)	247, 418, 688
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	2 cut(s)	277, 460
Lsp1109I	GCAGC	4 cut(s)	142, 575, 628, 773
LweI	GCATC	3 cut(s)	150, 594, 686
MabI	ACCWGGT	1 cut(s)	147
MaeI	CTAG	3 cut(s)	48, 350, 525
MaeIII	GTNAC	1 cut(s)	660
MalI	GATC	3 cut(s)	249, 420, 690
MboI	GATC	3 cut(s)	247, 418, 688
MboII	GAAGA	3 cut(s)	581, 638, 827
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	6 cut(s)	62, 392, 407, 719, 728, 831
MlyI	GAGTC	2 cut(s)	521, 836
MmeI	TCCRAC	2 cut(s)	257, 343
MnlI	CCTC	5 cut(s)	289, 337, 661, 802, 864
MseI	TTAA	3 cut(s)	24, 617, 889
MslI	CAYNNNNRTG	2 cut(s)	500, 552
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	1 cut(s)	774
MspR9I	CCNGG	2 cut(s)	149, 638
MvaI	CCWGG	2 cut(s)	149, 638
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	3 cut(s)	247, 418, 688
NlaIII	CATG	6 cut(s)	166, 254, 292, 499, 676, 881
NlaIV	GGNNCC	4 cut(s)	273, 462, 634, 635
NmuCI	GTSAC	1 cut(s)	660
NspI	RCATGY	1 cut(s)	499
PaeR7I	CTCGAG	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	651
PfeI	GAWTC	5 cut(s)	196, 328, 366, 528, 595
PkrI	GCNGC	4 cut(s)	132, 565, 643, 763
PleI	GAGTC	2 cut(s)	520, 836
PpsI	GAGTC	2 cut(s)	520, 836
PpuMI	RGGWCCY	1 cut(s)	633
Psp5II	RGGWCCY	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	147, 636
PspGI	CCWGG	2 cut(s)	147, 636
PspN4I	GGNNCC	4 cut(s)	273, 462, 634, 635
PspPI	GGNCC	1 cut(s)	633
PspPPI	RGGWCCY	1 cut(s)	633
PstI	CTGCAG	2 cut(s)	309, 763
RsaI	GTAC	3 cut(s)	87, 447, 876
RsaNI	GTAC	3 cut(s)	86, 446, 875
RseI	CAYNNNNRTG	2 cut(s)	500, 552
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	3 cut(s)	24, 617, 889
SatI	GCNGC	4 cut(s)	131, 564, 642, 762
Sau3AI	GATC	3 cut(s)	247, 418, 688
Sau96I	GGNCC	1 cut(s)	633
SchI	GAGTC	2 cut(s)	521, 836
ScrFI	CCNGG	2 cut(s)	149, 638
SduI	GDGCHC	1 cut(s)	15
SexAI	ACCWGGT	1 cut(s)	147
SfaNI	GCATC	3 cut(s)	150, 594, 686
SfcI	CTRYAG	2 cut(s)	305, 759
Sfr274I	CTCGAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	633
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	2 cut(s)	500, 552
SmlI	CTYRAG	3 cut(s)	23, 337, 509
SmoI	CTYRAG	3 cut(s)	23, 337, 509
Sse9I	AATT	6 cut(s)	62, 392, 407, 719, 728, 831
SsiI	CCGC	1 cut(s)	853
SspMI	CTAG	3 cut(s)	48, 350, 525
StyD4I	CCNGG	2 cut(s)	147, 636
TaqI	TCGA	1 cut(s)	510
TasI	AATT	6 cut(s)	62, 392, 407, 719, 728, 831
TatI	WGTACW	2 cut(s)	85, 445
TfiI	GAWTC	5 cut(s)	196, 328, 366, 528, 595
Tru1I	TTAA	3 cut(s)	24, 617, 889
Tru9I	TTAA	3 cut(s)	24, 617, 889
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	1 cut(s)	660
TseI	GCWGC	4 cut(s)	130, 563, 641, 761
Tsp45I	GTSAC	1 cut(s)	660
TspDTI	ATGAA	7 cut(s)	17, 114, 257, 272, 320, 421, 811
TspRI	CASTG	1 cut(s)	763
Vha464I	CTTAAG	1 cut(s)	23
VneI	GTGCAC	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	633
XapI	RAATTY	2 cut(s)	62, 407
XbaI	TCTAGA	2 cut(s)	349, 524
XceI	RCATGY	1 cut(s)	499
XhoI	CTCGAG	1 cut(s)	509
XspI	CTAG	3 cut(s)	48, 350, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.