Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002975

Physical Location & Seq

Genomic Coordinates Reverse (-)

33167771 .. 33172361

Gene Structure 4591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAGTTACTGCACGAGACACTTAAGGATGTCTGCTTGTCATCCCCTAGAGTTGCATTGGAATTTTATCGTGCTGCTAGGGATGTACTACTTTTATATGAAGTTGTCATACCTGTCAAGCTGGAACGGCAGCTTGATGGCATCAACCAGGTTGCTGTACTCATGCACAACGATTGCCTTTATCTATCTCAGGAGATTCTTGGGCTTGCATTTGAGTATCGCTCAGACTTTCCAACTTCAAAGAAAGATCATGCTGTGTTTGTTGATATGGCTCCAAGATTTCATATCATGGCAGAGGAAATACTGCAGAGACAAATCCAACTTGTGATTCATAGCTTGAGAGAGGCTCTAGATGGCGCTGATGGATTCCAAAATACCCATCAAATGCAACAATTCCAATCTGCAAAATTTAGTATAGATCAGGTTGTTTTCATACTGGAGAAAGTACACATTATATGGGAGCCACTCTTATTGCCTTCAACTTACAAGAGAAGCATGTGTATGGTTCTCGAGTCAGTTTTTCTAGAATCACAAAAGACATACTCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

183

Amino Acids

21.24

Weight (kDa)

5.78

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZW10_C	PF20666	1 - 115	2.9e-34	Centromere/kinetochore protein zw10, C-terminal
ZW10_C2	PF22766	138 - 175	2.2e-06	ZW10 C-terminal helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32900
fragaria_vesca	FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900
malus_domestica	MD09G1116200.v1.1 MD17G1107900.v1.1
prunus_persica	Prupe.3G208500_v2.0.a1
pyrus_communis	pycom09g04060 pycom17g10050
rosa_chinensis	RchiOBHm_Chr0c20g0500271 RchiOBHm_Chr1g0340131 RchiOBHm_Chr1g0340141 RchiOBHm_Chr2g0157781
rosa_laevigata	RLG00000021018 RLG00000028993
rosa_multiflora	Rmu_co8468091.1_g000001 Rmu_sc0001275.1_g000033 Rmu_sc0010800.1_g000004 Rmu_sc0018661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091960 Rroxscaffold_4G00311000
rosa_rugosa	Rorug02G0463300 Rorug02G0463300
rosa_samantha	Rh1AG180900 Rh1CG167700 Rh1DG181000 Rh1DG181100 Rh2AG528800 Rh2BG542700 Rh2CG513100 Rh2DG551700
rosa_wichuraiana	Rw1G015020 Rw2G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	62, 407
AfaI	GTAC	3 cut(s)	87, 159, 447
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	240, 480
AjnI	CCWGG	1 cut(s)	147
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	3 cut(s)	121, 133, 336
AluI	AGCT	3 cut(s)	121, 133, 336
Alw26I	GTCTC	2 cut(s)	11, 304
Ama87I	CYCGRG	1 cut(s)	509
ApeKI	GCWGC	2 cut(s)	74, 130
ApoI	RAATTY	2 cut(s)	62, 407
AspLEI	GCGC	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	509
BarI	GAAGNNNNNNTAC	2 cut(s)	93, 125
BauI	CACGAG	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	61, 142
BccI	CCATC	4 cut(s)	131, 347, 356, 387
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	11, 304
BfaI	CTAG	4 cut(s)	48, 78, 350, 524
BfmI	CTRYAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	2 cut(s)	75, 131
BlsI	GCNGC	2 cut(s)	76, 132
Bme1390I	CCNGG	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	509
BmiI	GGNNCC	2 cut(s)	273, 462
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	150
BplI	GAGNNNNNCTC	4 cut(s)	206, 238, 331, 363
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	3 cut(s)	34, 41, 88
BseMII	CTCAG	2 cut(s)	203, 237
BseNI	ACTGG	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	61, 142
BsiHKCI	CYCGRG	1 cut(s)	509
BsmAI	GTCTC	2 cut(s)	11, 304
BsoBI	CYCGRG	1 cut(s)	509
Bsp143I	GATC	2 cut(s)	247, 418
BspCNI	CTCAG	2 cut(s)	202, 236
BspLI	GGNNCC	2 cut(s)	273, 462
BspMAI	CTGCAG	1 cut(s)	309
BspTI	CTTAAG	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	247, 418
BssSI	CACGAG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	189, 223
BstF5I	GGATG	3 cut(s)	34, 41, 88
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	2 cut(s)	250, 421
BstMAI	GTCTC	2 cut(s)	11, 304
BstMBI	GATC	2 cut(s)	247, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	61, 142
BtsCI	GGATG	3 cut(s)	34, 41, 88
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	359
CsiI	ACCWGGT	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	86, 158, 446
CspCI	CAANNNNNGTGG	2 cut(s)	453, 488
CviAII	CATG	4 cut(s)	163, 251, 289, 496
CviJI	RGCY	7 cut(s)	121, 133, 205, 272, 336, 347, 463
CviKI_1	RGCY	7 cut(s)	121, 133, 205, 272, 336, 347, 463
CviQI	GTAC	3 cut(s)	86, 158, 446
DdeI	CTNAG	2 cut(s)	189, 223
DpnI	GATC	2 cut(s)	249, 420
DpnII	GATC	2 cut(s)	247, 418
Eco88I	CYCGRG	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	147
FaeI	CATG	4 cut(s)	166, 254, 292, 499
FatI	CATG	4 cut(s)	162, 250, 288, 495
Fnu4HI	GCNGC	2 cut(s)	75, 131
FokI	GGATG	3 cut(s)	28, 41, 95
Fsp4HI	GCNGC	2 cut(s)	75, 131
FspBI	CTAG	4 cut(s)	48, 78, 350, 524
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	2 cut(s)	75, 131
GsuI	CTGGAG	1 cut(s)	458
HaeII	RGCGCY	1 cut(s)	360
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	4 cut(s)	166, 254, 292, 499
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	5 cut(s)	196, 328, 366, 512, 527
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	4 cut(s)	191, 350, 509, 524
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	1 cut(s)	486
HpyCH4V	TGCA	7 cut(s)	13, 56, 166, 209, 307, 388, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	189, 223
Hsp92II	CATG	4 cut(s)	166, 254, 292, 499
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	247, 418
LmnI	GCTCC	2 cut(s)	277, 460
LpnPI	CCDG	7 cut(s)	107, 126, 134, 161, 176, 407, 422
Lsp1109I	GCAGC	2 cut(s)	61, 142
LweI	GCATC	1 cut(s)	150
MabI	ACCWGGT	1 cut(s)	147
MaeI	CTAG	4 cut(s)	48, 78, 350, 524
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	2 cut(s)	249, 420
MboI	GATC	2 cut(s)	247, 418
MluCI	AATT	3 cut(s)	62, 392, 407
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	2 cut(s)	257, 343
MnlI	CCTC	2 cut(s)	289, 337
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	2 cut(s)	247, 418
NlaIII	CATG	4 cut(s)	166, 254, 292, 499
NlaIV	GGNNCC	2 cut(s)	273, 462
NspI	RCATGY	1 cut(s)	499
PaeR7I	CTCGAG	1 cut(s)	509
PfeI	GAWTC	4 cut(s)	196, 328, 366, 527
PkrI	GCNGC	2 cut(s)	76, 132
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	273, 462
PstI	CTGCAG	1 cut(s)	309
RsaI	GTAC	3 cut(s)	87, 159, 447
RsaNI	GTAC	3 cut(s)	86, 158, 446
RseI	CAYNNNNRTG	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	2 cut(s)	75, 131
Sau3AI	GATC	2 cut(s)	247, 418
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	6 cut(s)	115, 123, 135, 153, 338, 426
SexAI	ACCWGGT	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	305
Sfr274I	CTCGAG	1 cut(s)	509
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	3 cut(s)	23, 337, 509
SmoI	CTYRAG	3 cut(s)	23, 337, 509
Sse9I	AATT	3 cut(s)	62, 392, 407
SspMI	CTAG	4 cut(s)	48, 78, 350, 524
StyD4I	CCNGG	1 cut(s)	147
TaqI	TCGA	1 cut(s)	510
TasI	AATT	3 cut(s)	62, 392, 407
TatI	WGTACW	3 cut(s)	85, 157, 445
TfiI	GAWTC	4 cut(s)	196, 328, 366, 527
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseI	GCWGC	2 cut(s)	74, 130
TspDTI	ATGAA	5 cut(s)	17, 114, 272, 320, 421
Vha464I	CTTAAG	1 cut(s)	23
XapI	RAATTY	2 cut(s)	62, 407
XbaI	TCTAGA	2 cut(s)	349, 523
XceI	RCATGY	1 cut(s)	499
XhoI	CTCGAG	1 cut(s)	509
XspI	CTAG	4 cut(s)	48, 78, 350, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.