Rmu_sc0010800.1_g000004

Centromere kinetochore protein zw10 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010800.1
Physical Location & Seq
Reverse (-)
23298 .. 28061
4764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010800.1_g000004.1.cds

Sequence Viewer

Length: 1554 bp
atgcccaagggtatagtgctatatattagattttatttctccaaacagggtcttcctcaccatttcaggcatttcttttctgagaaagtcttgtgtggggcagctgcaccacgtggcggtgcggctgtccaatctcagcaggagagtattttggagctcctcctctcgggggcccaggacctcagcgaccccaccacaccggatctccgcctcctcatccaacgcctcgacgcccactccctcaaaatcatgttcaaaatccaatcctacctcctctctcaccgccacgacttcgccgacctcttctcccgctgcaacgacgccgtttcccgctcccgtaaaatctccgacgacgtcgttcaggttctcgcctcctcactctccgaccgcccggtgatcggccagattatgaagcagatgagcgccgccacgaaagaggcgagggagaagcgggagcggctggagctggtgagggaaattctggaaatatgcgaaaaattgaaggctgctagagaggcggtgaggaatggacggctgagagttgcggctgagcaagtgagggagctgaagaaggctcttagggtttccgagcgggttgatgagagtgagcctgttgtttatagcttgttgaggaaggagtggtcagactgctttgatgaggtaaaatcaggctttttactgattcaagaggtgctgatgaggttcatggacaatgcggtgcgtttcgaatgcgaatctaatagaattcgagtcaagtatgtactgagcattgatgggaaccatgggattgagctcaagacagtgttacaagctttggatgtggttggcattttacactatggacttgctaaagtagctgacttgatgatcaagcatgtcatctctccagctctgaattctggatcgcctgtgtcctttgtaacagaaataaatccagactcacaagcaatgactcaggcgacactgaagattgtaccatcaaatgatcctaaggagaatacaaggaggaaaggtaagcatgatggggctgctagcaatactccagaagatgttgacttgctatttctttcggagcggtgtgtggtgtccaaagcagcaattcaattaatgaagttagtgcacgagacacttgaggatgtctgcttgtcatcccctagagttgcattggaattttatcgtgctgctagggatgtactacttctatatgaagttgttatacctgtcaagctagaacggcagcttgatggcatcaaccaggttgctgttctgatgcacaacgattgcctttatctatctcaggagattcttgggtttgcatttgagtatcgctcagactttccaacttcaatgaaagatcatgctttgttaagtttgtttgttgatatggctccaagatttcatctcatggcagaggaaatactgcagagacaaatccaacttgtgattcatagcttgagagaggctctagatgtcgctgatggattccagaatacccatcaaatgcaacaattccaatctgcaaaatttagtatagatcaggtgcttttgctgtga

Protein Analysis

517

Amino Acids

58.58

Weight (kDa)

6.62

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 357
AccBSI CCGCTC 4 cut(s) 333, 457, 592, 1075
AclWI GGATC 3 cut(s) 210, 910, 980
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 5 cut(s) 477, 744, 895, 1169, 1523
AcuI CTGAAG 2 cut(s) 587, 986
AcvI CACGTG 1 cut(s) 113
AcyI GRCGYC 3 cut(s) 231, 321, 354
AdeI CACNNNGTG 1 cut(s) 113
AfaI GTAC 3 cut(s) 762, 975, 1194
AfiI CCNNNNNNNGG 4 cut(s) 116, 166, 169, 398
AgsI TTSAA 5 cut(s) 256, 502, 686, 1103, 1347
AjnI CCWGG 2 cut(s) 174, 1254
AjuI GAANNNNNNNTTGG 2 cut(s) 1428, 1460
Alw21I GWGCWC 3 cut(s) 159, 795, 1122
Alw26I GTCTC 2 cut(s) 1118, 1420
Alw44I GTGCAC 1 cut(s) 1118
AlwI GGATC 3 cut(s) 210, 910, 980
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 2 cut(s) 171, 400
ApaI GGGCCC 1 cut(s) 175
ApaLI GTGCAC 1 cut(s) 1118
ApeKI GCWGC 8 cut(s) 101, 104, 312, 506, 1028, 1094, 1181, 1237
ApoI RAATTY 5 cut(s) 477, 744, 895, 1169, 1523
AseI ATTAAT 1 cut(s) 1106
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 3 cut(s) 171, 172, 178
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 5 cut(s) 50, 272, 406, 481, 532
AsuII TTCGAA 1 cut(s) 726
AsuNHI GCTAGC 1 cut(s) 1031
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 1 cut(s) 178
AxyI CCTNAGG 1 cut(s) 990
BaeGI GKGCMC 2 cut(s) 175, 1122
BanII GRGCYC 3 cut(s) 159, 175, 795
BarI GAAGNNNNNNTAC 2 cut(s) 1200, 1232
BauI CACGAG 1 cut(s) 1121
BbrPI CACGTG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 3 cut(s) 159, 795, 1122
BbvCI CCTCAGC 1 cut(s) 182
BbvI GCAGC 8 cut(s) 91, 113, 299, 493, 1015, 1106, 1168, 1249
BccI CCATC 6 cut(s) 767, 985, 1016, 1238, 1472, 1503
BceAI ACGGC 3 cut(s) 308, 548, 1250
BciT130I CCWGG 2 cut(s) 176, 1256
BclI TGATCA 1 cut(s) 867
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 2 cut(s) 1118, 1420
BfaI CTAG 6 cut(s) 510, 1032, 1155, 1185, 1229, 1466
BfmI CTRYAG 1 cut(s) 1421
BfoI RGCGCY 1 cut(s) 426
BlpI GCTNAGC 1 cut(s) 549
Bme1390I CCNGG 3 cut(s) 176, 392, 1256
Bme18I GGWCC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 171, 172, 178
BmiI GGNNCC 4 cut(s) 172, 173, 779, 1389
BmrFI CCNGG 3 cut(s) 176, 392, 1256
BmsI GCATC 2 cut(s) 1257, 1260
BmtI GCTAGC 1 cut(s) 1035
BpiI GAAGAC 1 cut(s) 44
BplI GAGNNNNNCTC 4 cut(s) 1313, 1345, 1447, 1479
BpmI CTGGAG 3 cut(s) 482, 870, 1026
Bpu10I CCTNAGC 1 cut(s) 182
Bpu1102I GCTNAGC 1 cut(s) 549
Bpu14I TTCGAA 1 cut(s) 726
BpuEI CTTGAG 3 cut(s) 779, 1151, 1474
BpuMI CCSGG 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 113
BsaHI GRCGYC 3 cut(s) 231, 321, 354
BsaJI CCNNGG 3 cut(s) 6, 174, 781
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 8 cut(s) 189, 219, 221, 251, 290, 320, 997, 1027
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 166, 169, 398
Bse21I CCTNAGG 1 cut(s) 990
Bse3DI GCAATG 1 cut(s) 954
BseBI CCWGG 2 cut(s) 176, 1256
BseDI CCNNGG 3 cut(s) 6, 174, 781
BseGI GGATG 5 cut(s) 216, 823, 1141, 1148, 1195
BseLI CCNNNNNNNGG 4 cut(s) 116, 166, 169, 398
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 9 cut(s) 72, 149, 196, 527, 540, 755, 968, 1310, 1344
BseRI GAGGAG 5 cut(s) 149, 152, 203, 263, 364
BseSI GKGCMC 2 cut(s) 175, 1122
BseXI GCAGC 8 cut(s) 91, 113, 299, 493, 1015, 1106, 1168, 1249
BsgI GTGCAG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 2 cut(s) 173, 402
BsiEI CGRYCG 1 cut(s) 388
BsiHKAI GWGCWC 3 cut(s) 159, 795, 1122
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 2 cut(s) 200, 392
BslI CCNNNNNNNGG 4 cut(s) 116, 166, 169, 398
BsmAI GTCTC 2 cut(s) 1118, 1420
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 2 cut(s) 173, 402
BsoBI CYCGRG 1 cut(s) 166
Bsp119I TTCGAA 1 cut(s) 726
Bsp120I GGGCCC 1 cut(s) 171
Bsp1286I GDGCHC 4 cut(s) 159, 175, 795, 1122
Bsp143I GATC 7 cut(s) 202, 396, 867, 902, 985, 1354, 1534
Bsp1720I GCTNAGC 1 cut(s) 549
Bsp19I CCATGG 1 cut(s) 781
BspANI GGCC 2 cut(s) 173, 402
BspCNI CTCAG 9 cut(s) 73, 148, 195, 528, 541, 756, 967, 1309, 1343
BspLI GGNNCC 4 cut(s) 172, 173, 779, 1389
BspMAI CTGCAG 1 cut(s) 1425
BspOI GCTAGC 1 cut(s) 1035
BspPI GGATC 3 cut(s) 210, 910, 980
BspT104I TTCGAA 1 cut(s) 726
BsrBI CCGCTC 4 cut(s) 333, 457, 592, 1075
BsrDI GCAATG 1 cut(s) 954
BssECI CCNNGG 3 cut(s) 6, 174, 781
BssMI GATC 7 cut(s) 202, 396, 867, 902, 985, 1354, 1534
BssNI GRCGYC 3 cut(s) 231, 321, 354
BssSI CACGAG 1 cut(s) 1121
BssT1I CCWWGG 2 cut(s) 6, 781
Bst2BI CACGAG 1 cut(s) 1121
Bst2UI CCWGG 2 cut(s) 176, 1256
Bst4CI ACNGT 1 cut(s) 802
Bst6I CTCTTC 1 cut(s) 308
BstACI GRCGYC 3 cut(s) 231, 321, 354
BstBAI YACGTR 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 726
BstC8I GCNNGC 1 cut(s) 1033
BstDSI CCRYGG 1 cut(s) 781
BstF5I GGATG 5 cut(s) 216, 823, 1141, 1148, 1195
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 7 cut(s) 205, 399, 870, 905, 988, 1357, 1537
BstMAI GTCTC 2 cut(s) 1118, 1420
BstMBI GATC 7 cut(s) 202, 396, 867, 902, 985, 1354, 1534
BstMCI CGRYCG 1 cut(s) 388
BstMWI GCNNNNNNNGC 5 cut(s) 457, 463, 515, 854, 1234
BstNI CCWGG 2 cut(s) 176, 1256
BstNSI RCATGY 1 cut(s) 878
BstSCI CCNGG 3 cut(s) 174, 390, 1254
BstSFI CTRYAG 1 cut(s) 1421
BstSLI GKGCMC 2 cut(s) 175, 1122
BstV1I GCAGC 8 cut(s) 91, 113, 299, 493, 1015, 1106, 1168, 1249
BstV2I GAAGAC 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 990
BsuRI GGCC 2 cut(s) 173, 402
BtgI CCRYGG 1 cut(s) 781
BtsCI GGATG 5 cut(s) 216, 823, 1141, 1148, 1195
BtsIMutI CAGTG 2 cut(s) 807, 962
Cac8I GCNNGC 1 cut(s) 1033
CfoI GCGC 1 cut(s) 425
Cfr13I GGNCC 3 cut(s) 171, 172, 178
CseI GACGC 2 cut(s) 239, 329
CsiI ACCWGGT 1 cut(s) 1254
Csp6I GTAC 3 cut(s) 761, 974, 1193
CviAII CATG 7 cut(s) 250, 706, 782, 875, 1019, 1358, 1405
CviQI GTAC 3 cut(s) 761, 974, 1193
DpnI GATC 7 cut(s) 204, 398, 869, 904, 987, 1356, 1536
DpnII GATC 7 cut(s) 202, 396, 867, 902, 985, 1354, 1534
DraIII CACNNNGTG 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 2 cut(s) 157, 793
Eco130I CCWWGG 2 cut(s) 6, 781
Eco24I GRGCYC 3 cut(s) 159, 175, 795
Eco47I GGWCC 1 cut(s) 178
Eco53kI GAGCTC 2 cut(s) 157, 793
Eco57I CTGAAG 2 cut(s) 587, 986
Eco72I CACGTG 1 cut(s) 113
Eco81I CCTNAGG 1 cut(s) 990
Eco88I CYCGRG 1 cut(s) 166
EcoICRI GAGCTC 2 cut(s) 157, 793
EcoO109I RGGNCCY 2 cut(s) 171, 178
EcoRI GAATTC 2 cut(s) 744, 895
EcoRII CCWGG 2 cut(s) 174, 1254
EcoT14I CCWWGG 2 cut(s) 6, 781
EcoT38I GRGCYC 3 cut(s) 159, 175, 795
ErhI CCWWGG 2 cut(s) 6, 781
FaeI CATG 7 cut(s) 253, 709, 785, 878, 1022, 1361, 1408
FatI CATG 7 cut(s) 249, 705, 781, 874, 1018, 1357, 1404
FauI CCCGC 4 cut(s) 317, 338, 444, 585
FbaI TGATCA 1 cut(s) 867
FokI GGATG 5 cut(s) 203, 830, 1135, 1148, 1202
FriOI GRGCYC 3 cut(s) 159, 175, 795
FspBI CTAG 6 cut(s) 510, 1032, 1155, 1185, 1229, 1466
GlaI GCGC 1 cut(s) 424
GsuI CTGGAG 3 cut(s) 482, 870, 1026
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 2 cut(s) 173, 402
HapII CCGG 2 cut(s) 200, 392
HgaI GACGC 2 cut(s) 239, 329
HhaI GCGC 1 cut(s) 425
Hin1I GRCGYC 3 cut(s) 231, 321, 354
Hin1II CATG 7 cut(s) 253, 709, 785, 878, 1022, 1361, 1408
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HincII GTYRAC 1 cut(s) 1054
HindII GTYRAC 1 cut(s) 1054
HindIII AAGCTT 1 cut(s) 810
HinfI GANTC 8 cut(s) 682, 734, 750, 938, 952, 1303, 1444, 1482
HpaII CCGG 2 cut(s) 200, 392
HphI GGTGA 5 cut(s) 50, 272, 406, 481, 532
Hpy166II GTNNAC 2 cut(s) 1054, 1120
Hpy188I TCNGA 9 cut(s) 82, 349, 385, 589, 646, 894, 1072, 1269, 1333
Hpy188III TCNNGA 9 cut(s) 482, 686, 796, 900, 935, 1043, 1298, 1466, 1486
Hpy8I GTNNAC 2 cut(s) 1054, 1120
Hpy99I CGWCG 5 cut(s) 233, 323, 353, 356, 359
HpyAV CCTTC 3 cut(s) 496, 565, 628
HpyCH4III ACNGT 1 cut(s) 802
HpyCH4IV ACGT 2 cut(s) 112, 354
HpyCH4V TGCA 9 cut(s) 107, 315, 1120, 1163, 1273, 1316, 1423, 1504, 1520
HpyF10VI GCNNNNNNNGC 5 cut(s) 457, 463, 515, 854, 1234
HpySE526I ACGT 2 cut(s) 112, 354
Hsp92I GRCGYC 3 cut(s) 231, 321, 354
Hsp92II CATG 7 cut(s) 253, 709, 785, 878, 1022, 1361, 1408
HspAI GCGC 1 cut(s) 423
Ksp22I TGATCA 1 cut(s) 867
Kzo9I GATC 7 cut(s) 202, 396, 867, 902, 985, 1354, 1534
LmnI GCTCC 8 cut(s) 154, 162, 338, 454, 463, 562, 1072, 1393
Lsp1109I GCAGC 8 cut(s) 91, 113, 299, 493, 1015, 1106, 1168, 1249
LweI GCATC 2 cut(s) 1257, 1260
MabI ACCWGGT 1 cut(s) 1254
MaeI CTAG 6 cut(s) 510, 1032, 1155, 1185, 1229, 1466
MaeII ACGT 2 cut(s) 112, 354
MaeIII GTNAC 2 cut(s) 804, 919
MalI GATC 7 cut(s) 204, 398, 869, 904, 987, 1356, 1536
MbiI CCGCTC 4 cut(s) 333, 457, 592, 1075
MboI GATC 7 cut(s) 202, 396, 867, 902, 985, 1354, 1534
MboII GAAGA 5 cut(s) 44, 295, 580, 979, 1058
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 4 cut(s) 159, 175, 795, 1122
MluCI AATT 9 cut(s) 477, 497, 744, 895, 1098, 1103, 1169, 1508, 1523
MlyI GAGTC 3 cut(s) 759, 932, 946
MmeI TCCRAC 5 cut(s) 244, 372, 408, 1364, 1459
MseI TTAA 2 cut(s) 1106, 1367
MspA1I CMGCKG 2 cut(s) 104, 312
MspI CCGG 2 cut(s) 200, 392
MspR9I CCNGG 3 cut(s) 176, 392, 1256
Mva1269I GAATGC 1 cut(s) 734
MvaI CCWGG 2 cut(s) 176, 1256
MwoI GCNNNNNNNGC 5 cut(s) 457, 463, 515, 854, 1234
NciI CCSGG 1 cut(s) 392
NcoI CCATGG 1 cut(s) 781
NdeII GATC 7 cut(s) 202, 396, 867, 902, 985, 1354, 1534
NheI GCTAGC 1 cut(s) 1031
NlaIII CATG 7 cut(s) 253, 709, 785, 878, 1022, 1361, 1408
NlaIV GGNNCC 4 cut(s) 172, 173, 779, 1389
NspI RCATGY 1 cut(s) 878
NspV TTCGAA 1 cut(s) 726
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 437
PctI GAATGC 1 cut(s) 734
PfeI GAWTC 5 cut(s) 682, 734, 1303, 1444, 1482
PflFI GACNNNGTC 1 cut(s) 353
PleI GAGTC 3 cut(s) 758, 932, 946
PmaCI CACGTG 1 cut(s) 113
PmlI CACGTG 1 cut(s) 113
PpsI GAGTC 3 cut(s) 758, 932, 946
Ppu21I YACGTR 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 178
PshBI ATTAAT 1 cut(s) 1106
Psp124BI GAGCTC 2 cut(s) 159, 795
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 174, 1254
PspCI CACGTG 1 cut(s) 113
PspGI CCWGG 2 cut(s) 174, 1254
PspN4I GGNNCC 4 cut(s) 172, 173, 779, 1389
PspOMI GGGCCC 1 cut(s) 171
PspPI GGNCC 3 cut(s) 171, 172, 178
PspPPI RGGWCCY 1 cut(s) 178
PstI CTGCAG 1 cut(s) 1425
PsuI RGATCY 1 cut(s) 202
PsyI GACNNNGTC 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 3 cut(s) 762, 975, 1194
RsaNI GTAC 3 cut(s) 761, 974, 1193
SacI GAGCTC 2 cut(s) 159, 795
SaqAI TTAA 2 cut(s) 1106, 1367
Sau3AI GATC 7 cut(s) 202, 396, 867, 902, 985, 1354, 1534
Sau96I GGNCC 3 cut(s) 171, 172, 178
SchI GAGTC 3 cut(s) 759, 932, 946
ScrFI CCNGG 3 cut(s) 176, 392, 1256
SduI GDGCHC 4 cut(s) 159, 175, 795, 1122
SexAI ACCWGGT 1 cut(s) 1254
SfaNI GCATC 2 cut(s) 1257, 1260
SfcI CTRYAG 1 cut(s) 1421
SfuI TTCGAA 1 cut(s) 726
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 3 cut(s) 794, 1130, 1453
SmoI CTYRAG 3 cut(s) 794, 1130, 1453
Sse9I AATT 9 cut(s) 477, 497, 744, 895, 1098, 1103, 1169, 1508, 1523
SspMI CTAG 6 cut(s) 510, 1032, 1155, 1185, 1229, 1466
SstI GAGCTC 2 cut(s) 159, 795
StyD4I CCNGG 3 cut(s) 174, 390, 1254
StyI CCWWGG 2 cut(s) 6, 781
TaaI ACNGT 1 cut(s) 802
TaiI ACGT 2 cut(s) 115, 357
TaqI TCGA 3 cut(s) 228, 726, 748
TasI AATT 9 cut(s) 477, 497, 744, 895, 1098, 1103, 1169, 1508, 1523
TatI WGTACW 2 cut(s) 760, 1192
TauI GCSGC 4 cut(s) 125, 428, 460, 548
TfiI GAWTC 5 cut(s) 682, 734, 1303, 1444, 1482
Tru1I TTAA 2 cut(s) 1106, 1367
Tru9I TTAA 2 cut(s) 1106, 1367
TscAI CASTG 2 cut(s) 807, 969
TseI GCWGC 8 cut(s) 101, 104, 312, 506, 1028, 1094, 1181, 1237
TspDTI ATGAA 7 cut(s) 425, 694, 1124, 1221, 1364, 1388, 1436
TspRI CASTG 2 cut(s) 807, 969
Tth111I GACNNNGTC 1 cut(s) 353
VneI GTGCAC 1 cut(s) 1118
VpaK11BI GGWCC 1 cut(s) 178
VspI ATTAAT 1 cut(s) 1106
XapI RAATTY 5 cut(s) 477, 744, 895, 1169, 1523
XbaI TCTAGA 1 cut(s) 1465
XceI RCATGY 1 cut(s) 878
XspI CTAG 6 cut(s) 510, 1032, 1155, 1185, 1229, 1466
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.