Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8468091.1

Orthogroup ID

OG0002975

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1948

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8468091.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ctggaaataagcgaaaaattgaaggcggctagagaggcgttgaggaaggggcggctgagatttgcggctgagcaattgagggagctgaagaaggctcttagggtttccgatgatgatcgggttgatgagagtgagcctgtggtttatggcttgttgaggaaggagtggtcagactgctttgatgagattcaagaggtgctgatgaggttcatggacaatgcggtgcgtttcgatcgcgaatcgaatagaattcaagtcaagtatgtactcagcattggtggcaacgatgggattgagctcaagacagtgttacaagctttggatgtggttgacattttacactatggacttgctaaagtagctgacttgataatcaagcattgcatctctccacctctaaattctggagcacctgtgtcctttgtaacagaaataaatccaaactcacaagcaatgactgaggcgatactgaagattgtaccatcaaatgatcctaagattgaaaaaatggacggggagactatctatccaaggattattgaggttataaagtttattgacaagtacatttgctttcaagagggatcttggactcgatgctttggaagattgacatggccaagaatatcagagttgattatttctaagtttctttctaaggttgtcccccaagatgcttcaaaacttgcagactttctaaagatcatcaattgtacttctgaatttgagactgctttaagggagatgaagtttatttcagtatctgaaaacaaagataaccagttgagcagttttgctgaaaacgtcgaggttcacttcgcatccaggaagaagacagaaatcttgggaagagctaggaatttgcttctacaatgtgattttgctatttctcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

298

Amino Acids

34.02

Weight (kDa)

6.1

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32900
fragaria_vesca	FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900
malus_domestica	MD09G1116200.v1.1 MD17G1107900.v1.1
prunus_persica	Prupe.3G208500_v2.0.a1
pyrus_communis	pycom09g04060 pycom17g10050
rosa_chinensis	RchiOBHm_Chr0c20g0500271 RchiOBHm_Chr1g0340131 RchiOBHm_Chr1g0340141 RchiOBHm_Chr2g0157781
rosa_laevigata	RLG00000021018 RLG00000028993
rosa_multiflora	Rmu_co8468091.1_g000001 Rmu_sc0001275.1_g000033 Rmu_sc0010800.1_g000004 Rmu_sc0018661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091960 Rroxscaffold_4G00311000
rosa_rugosa	Rorug02G0463300 Rorug02G0463300
rosa_samantha	Rh1AG180900 Rh1CG167700 Rh1DG181000 Rh1DG181100 Rh2AG528800 Rh2BG542700 Rh2CG513100 Rh2DG551700
rosa_wichuraiana	Rw1G015020 Rw2G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	548
AccII	CGCG	1 cut(s)	237
AciI	CCGC	4 cut(s)	26, 52, 65, 221
AclWI	GGATC	2 cut(s)	485, 592
AcoI	YGGCCR	1 cut(s)	617
AcsI	RAATTY	4 cut(s)	249, 400, 722, 859
AcuI	CTGAAG	2 cut(s)	107, 491
AfaI	GTAC	4 cut(s)	267, 480, 566, 715
AgsI	TTSAA	6 cut(s)	22, 191, 254, 503, 578, 681
AjnI	CCWGG	1 cut(s)	824
AluBI	AGCT	5 cut(s)	85, 298, 317, 362, 854
AluI	AGCT	5 cut(s)	85, 298, 317, 362, 854
Alw21I	GWGCWC	2 cut(s)	300, 412
Alw26I	GTCTC	2 cut(s)	512, 722
AlwI	GGATC	2 cut(s)	485, 592
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	1 cut(s)	617
ApoI	RAATTY	4 cut(s)	249, 400, 722, 859
BalI	TGGCCA	1 cut(s)	619
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	2 cut(s)	300, 412
BccI	CCATC	2 cut(s)	281, 490
BciT130I	CCWGG	1 cut(s)	826
BcoDI	GTCTC	2 cut(s)	512, 722
BfaI	CTAG	2 cut(s)	30, 855
BisI	GCNGC	3 cut(s)	27, 53, 66
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	3 cut(s)	28, 54, 67
Bme1390I	CCNGG	1 cut(s)	826
BmrFI	CCNGG	1 cut(s)	826
BmsI	GCATC	4 cut(s)	393, 587, 664, 830
BpiI	GAAGAC	1 cut(s)	839
BpmI	CTGGAG	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	530
BsaXI	ACNNNNNCTCC	4 cut(s)	399, 429, 734, 764
Bse1I	ACTGG	1 cut(s)	781
Bse3DI	GCAATG	2 cut(s)	379, 459
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	826
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	2 cut(s)	328, 821
BseJI	GATNNNNATC	1 cut(s)	114
BseMI	GCAATG	2 cut(s)	379, 459
BseMII	CTCAG	4 cut(s)	47, 60, 283, 450
BseNI	ACTGG	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	619
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	2 cut(s)	300, 412
BslFI	GGGAC	1 cut(s)	650
BsmAI	GTCTC	2 cut(s)	512, 722
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	1 cut(s)	619
Bsp1286I	GDGCHC	2 cut(s)	300, 412
Bsp143I	GATC	5 cut(s)	115, 232, 490, 584, 702
Bsp1720I	GCTNAGC	1 cut(s)	69
Bsp68I	TCGCGA	1 cut(s)	237
BspACI	CCGC	4 cut(s)	26, 52, 65, 221
BspANI	GGCC	1 cut(s)	619
BspCNI	CTCAG	4 cut(s)	48, 61, 282, 451
BspFNI	CGCG	1 cut(s)	237
BspPI	GGATC	2 cut(s)	485, 592
BspQI	GCTCTTC	1 cut(s)	844
BsrDI	GCAATG	2 cut(s)	379, 459
BsrI	ACTGG	1 cut(s)	781
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	5 cut(s)	115, 232, 490, 584, 702
BssT1I	CCWWGG	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	826
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	844
BstDEI	CTNAG	8 cut(s)	56, 69, 98, 269, 459, 495, 645, 657
BstF5I	GGATG	2 cut(s)	328, 821
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	5 cut(s)	118, 235, 493, 587, 705
BstMAI	GTCTC	2 cut(s)	512, 722
BstMBI	GATC	5 cut(s)	115, 232, 490, 584, 702
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 279, 359
BstNI	CCWGG	1 cut(s)	826
BstSCI	CCNGG	1 cut(s)	824
BstUI	CGCG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	619
BtsCI	GGATG	2 cut(s)	328, 821
BtsIMutI	CAGTG	1 cut(s)	312
BtuMI	TCGCGA	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	764
Csp6I	GTAC	4 cut(s)	266, 479, 565, 714
CviAII	CATG	2 cut(s)	211, 615
CviQI	GTAC	4 cut(s)	266, 479, 565, 714
DdeI	CTNAG	8 cut(s)	56, 69, 98, 269, 459, 495, 645, 657
DpnI	GATC	5 cut(s)	117, 234, 492, 586, 704
DpnII	GATC	5 cut(s)	115, 232, 490, 584, 702
EaeI	YGGCCR	1 cut(s)	617
Eam1104I	CTCTTC	1 cut(s)	844
EarI	CTCTTC	1 cut(s)	844
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	530
Eco24I	GRGCYC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	107, 491
EcoICRI	GAGCTC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	824
EcoT14I	CCWWGG	1 cut(s)	530
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	2 cut(s)	214, 618
FaiI	YATR	6 cut(s)	147, 212, 264, 345, 548, 616
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	2 cut(s)	210, 614
Fnu4HI	GCNGC	3 cut(s)	27, 53, 66
FokI	GGATG	2 cut(s)	335, 808
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	27, 53, 66
FspBI	CTAG	2 cut(s)	30, 855
GluI	GCNGC	3 cut(s)	27, 53, 66
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	619
Hin1II	CATG	2 cut(s)	214, 618
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	3 cut(s)	187, 239, 592
Hpy166II	GTNNAC	2 cut(s)	331, 814
Hpy188I	TCNGA	5 cut(s)	109, 172, 631, 721, 766
Hpy188III	TCNNGA	5 cut(s)	191, 236, 301, 405, 578
Hpy8I	GTNNAC	2 cut(s)	331, 814
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	4 cut(s)	16, 40, 85, 154
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	2 cut(s)	384, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 279, 359
HpyF3I	CTNAG	8 cut(s)	56, 69, 98, 269, 459, 495, 645, 657
HpySE526I	ACGT	1 cut(s)	804
Hsp92II	CATG	2 cut(s)	214, 618
Kzo9I	GATC	5 cut(s)	115, 232, 490, 584, 702
LguI	GCTCTTC	1 cut(s)	844
LmnI	GCTCC	2 cut(s)	82, 407
LpnPI	CCDG	6 cut(s)	150, 390, 426, 794, 811, 838
LweI	GCATC	4 cut(s)	393, 587, 664, 830
MaeI	CTAG	2 cut(s)	30, 855
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	2 cut(s)	309, 424
MalI	GATC	5 cut(s)	117, 234, 492, 586, 704
MboI	GATC	5 cut(s)	115, 232, 490, 584, 702
MboII	GAAGA	6 cut(s)	100, 484, 618, 841, 844, 861
MfeI	CAATTG	2 cut(s)	74, 709
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	2 cut(s)	300, 412
MlsI	TGGCCA	1 cut(s)	619
MluCI	AATT	7 cut(s)	17, 74, 249, 400, 709, 722, 859
MluNI	TGGCCA	1 cut(s)	619
MlyI	GAGTC	1 cut(s)	586
Mox20I	TGGCCA	1 cut(s)	619
MscI	TGGCCA	1 cut(s)	619
MseI	TTAA	1 cut(s)	737
Msp20I	TGGCCA	1 cut(s)	619
MspR9I	CCNGG	1 cut(s)	826
MunI	CAATTG	2 cut(s)	74, 709
MvaI	CCWGG	1 cut(s)	826
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	35, 279, 359
NdeII	GATC	5 cut(s)	115, 232, 490, 584, 702
NlaIII	CATG	2 cut(s)	214, 618
NruI	TCGCGA	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	844
PfeI	GAWTC	2 cut(s)	187, 239
PfoI	TCCNGGA	1 cut(s)	824
PkrI	GCNGC	3 cut(s)	28, 54, 67
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PsiI	TTATAA	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	824
PspGI	CCWGG	1 cut(s)	824
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	584
PvuI	CGATCG	1 cut(s)	235
RruI	TCGCGA	1 cut(s)	237
RsaI	GTAC	4 cut(s)	267, 480, 566, 715
RsaNI	GTAC	4 cut(s)	266, 479, 565, 714
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	844
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	3 cut(s)	27, 53, 66
Sau3AI	GATC	5 cut(s)	115, 232, 490, 584, 702
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	1 cut(s)	826
SduI	GDGCHC	2 cut(s)	300, 412
SfaNI	GCATC	4 cut(s)	393, 587, 664, 830
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	7 cut(s)	17, 74, 249, 400, 709, 722, 859
SsiI	CCGC	4 cut(s)	26, 52, 65, 221
SspMI	CTAG	2 cut(s)	30, 855
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	824
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	4 cut(s)	231, 242, 595, 807
TasI	AATT	7 cut(s)	17, 74, 249, 400, 709, 722, 859
TatI	WGTACW	3 cut(s)	265, 564, 713
TauI	GCSGC	3 cut(s)	29, 55, 68
TfiI	GAWTC	2 cut(s)	187, 239
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TscAI	CASTG	1 cut(s)	312
TspDTI	ATGAA	2 cut(s)	199, 761
TspRI	CASTG	1 cut(s)	312
XapI	RAATTY	4 cut(s)	249, 400, 722, 859
XspI	CTAG	2 cut(s)	30, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.