Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002975

Physical Location & Seq

Genomic Coordinates Forward (+)

36520037 .. 36522072

Gene Structure 2036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTCAAAATCCAATCCTACCTCCTCTCTCACCGCCACGACTTCGCCGACCTCTTCTCCCTCTGCAACGACGCCGTTTCCCGCTCCCGTAAAATCTCCGACGACGTCGTTCAGCTTCTCGCCTCCTCACTCTCCGACCGCCCGGTGATCGGCCAGATTATGAAGCAGATGAGCGCCGCCACGAAAGAGGCGAGGGAGAAGCGGGAGCTGCTGGAGCTGGTTGATGAGAGTGAGCCTGTTGTTTATAGCTTGTTGAGGAAGGAGTGGTCAGACTGCTTTGATGAGATTCAAGAGGTGCTGATGAGGTTCATGGACAATGTGGTGTGTTTTGATCGCGAATCGAATAGAATTCGAGTCAAGTATGTACTGAGCATTGATGGGAACGATGGGATTGAGCTCAAGACAGTGTTACAAGCTTTGGATGTGGTTGGCATTTTACACTATGGACTTGCTAAAGTAGCTGACTTGATGATCAAGCATGTCATCTCTCCAGCTCTGAATTCTGGATCGCCTGTGTCCTTTGTAACAGAAATAAATCCAGACTCACAAGCAATGACTGAGGCAATACTGAAGATTGTACCATCAAATGATCCTAAGATCGAAAGAATGGACAGGGAGACTATCTATCCAAGGATTACTGAGGTTATAAAGTTTATTGACAAGTACATTTTCTTTCAAGAGGGTTCTTGGACTCGATGCTTTGGAAGATTGACATGGCCAAGAATATCAGAGTTGATTATTTCTAAGTTTCTTTCCAAGGTTGTCCCCCAAGATGCTTCAAAACTTGCAGACTTTCTAAAGATCATTAATTGTACATCTGAATTTTTAGACTGCTTTAAGGGAGATGAAGTTTATTTCAGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

288

Amino Acids

33.01

Weight (kDa)

5.3

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zw10_middle	PF20665	85 - 278	6.8e-33	Centromere/kinetochore protein zw10, middle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32900
fragaria_vesca	FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900
malus_domestica	MD09G1116200.v1.1 MD17G1107900.v1.1
prunus_persica	Prupe.3G208500_v2.0.a1
pyrus_communis	pycom09g04060 pycom17g10050
rosa_chinensis	RchiOBHm_Chr0c20g0500271 RchiOBHm_Chr1g0340131 RchiOBHm_Chr1g0340141 RchiOBHm_Chr2g0157781
rosa_laevigata	RLG00000021018 RLG00000028993
rosa_multiflora	Rmu_co8468091.1_g000001 Rmu_sc0001275.1_g000033 Rmu_sc0010800.1_g000004 Rmu_sc0018661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091960 Rroxscaffold_4G00311000
rosa_rugosa	Rorug02G0463300 Rorug02G0463300
rosa_samantha	Rh1AG180900 Rh1CG167700 Rh1DG181000 Rh1DG181100 Rh2AG528800 Rh2BG542700 Rh2CG513100 Rh2DG551700
rosa_wichuraiana	Rw1G015020 Rw2G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
AatII	GACGTC	1 cut(s)	108
AccBSI	CCGCTC	1 cut(s)	84
AccII	CGCG	1 cut(s)	336
AciI	CCGC	5 cut(s)	34, 82, 139, 177, 202
AclWI	GGATC	2 cut(s)	514, 584
AcoI	YGGCCR	2 cut(s)	151, 716
AcsI	RAATTY	3 cut(s)	348, 499, 821
AcuI	CTGAAG	1 cut(s)	590
AcyI	GRCGYC	2 cut(s)	72, 105
AfaI	GTAC	4 cut(s)	366, 579, 665, 814
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	7, 290, 677, 780
AluBI	AGCT	8 cut(s)	115, 208, 217, 249, 397, 416, 461, 494
AluI	AGCT	8 cut(s)	115, 208, 217, 249, 397, 416, 461, 494
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	2 cut(s)	514, 584
AoxI	GGCC	2 cut(s)	151, 716
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	3 cut(s)	348, 499, 821
AseI	ATTAAT	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	23, 157
BalI	TGGCCA	1 cut(s)	718
BanII	GRGCYC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	3 cut(s)	371, 380, 589
BceAI	ACGGC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	611
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	2 cut(s)	177, 209
BlsI	GCNGC	2 cut(s)	178, 210
Bme1390I	CCNGG	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	686, 763
BpmI	CTGGAG	2 cut(s)	233, 474
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	143
BsaHI	GRCGYC	2 cut(s)	72, 105
BsaJI	CCNNGG	2 cut(s)	629, 756
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 834, 864
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	629, 756
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	3 cut(s)	359, 549, 630
BseRI	GAGGAG	2 cut(s)	14, 115
BseXI	GCAGC	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	153, 718
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	611
BsmFI	GGGAC	1 cut(s)	749
BsnI	GGCC	2 cut(s)	153, 718
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp1407I	TGTACA	1 cut(s)	812
Bsp143I	GATC	7 cut(s)	147, 331, 471, 506, 589, 597, 801
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	5 cut(s)	34, 82, 139, 177, 202
BspANI	GGCC	2 cut(s)	153, 718
BspCNI	CTCAG	3 cut(s)	360, 550, 631
BspFNI	CGCG	1 cut(s)	336
BspPI	GGATC	2 cut(s)	514, 584
BsrBI	CCGCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	558
BsrGI	TGTACA	1 cut(s)	812
BssECI	CCNNGG	2 cut(s)	629, 756
BssMI	GATC	7 cut(s)	147, 331, 471, 506, 589, 597, 801
BssNI	GRCGYC	2 cut(s)	72, 105
BssT1I	CCWWGG	2 cut(s)	629, 756
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	2 cut(s)	72, 105
BstAUI	TGTACA	1 cut(s)	812
BstDEI	CTNAG	5 cut(s)	368, 558, 594, 639, 744
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	336
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	7 cut(s)	150, 334, 474, 509, 592, 600, 804
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	7 cut(s)	147, 331, 471, 506, 589, 597, 801
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 214, 458
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	153, 718
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	411
BtuMI	TCGCGA	1 cut(s)	336
CfoI	GCGC	1 cut(s)	176
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	4 cut(s)	365, 578, 664, 813
CviAII	CATG	3 cut(s)	310, 479, 714
CviQI	GTAC	4 cut(s)	365, 578, 664, 813
DdeI	CTNAG	5 cut(s)	368, 558, 594, 639, 744
DpnI	GATC	7 cut(s)	149, 333, 473, 508, 591, 599, 803
DpnII	GATC	7 cut(s)	147, 331, 471, 506, 589, 597, 801
EaeI	YGGCCR	2 cut(s)	151, 716
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	2 cut(s)	629, 756
Eco24I	GRGCYC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	590
EcoICRI	GAGCTC	1 cut(s)	397
EcoRI	GAATTC	2 cut(s)	348, 499
EcoT14I	CCWWGG	2 cut(s)	629, 756
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	2 cut(s)	629, 756
FaeI	CATG	3 cut(s)	313, 482, 717
FaiI	YATR	9 cut(s)	161, 246, 311, 363, 444, 480, 647, 715, 863
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	3 cut(s)	309, 478, 713
FauI	CCCGC	2 cut(s)	89, 195
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	177, 209
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	2 cut(s)	177, 209
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	2 cut(s)	177, 209
GsuI	CTGGAG	2 cut(s)	233, 474
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	153, 718
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	72, 105
Hin1II	CATG	3 cut(s)	313, 482, 717
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	5 cut(s)	286, 338, 354, 542, 691
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	2 cut(s)	23, 157
Hpy188I	TCNGA	6 cut(s)	100, 136, 271, 498, 730, 820
Hpy188III	TCNNGA	6 cut(s)	290, 335, 400, 504, 539, 677
Hpy99I	CGWCG	4 cut(s)	74, 104, 107, 110
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	66, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 214, 458
HpyF3I	CTNAG	5 cut(s)	368, 558, 594, 639, 744
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	2 cut(s)	72, 105
Hsp92II	CATG	3 cut(s)	313, 482, 717
HspAI	GCGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	7 cut(s)	147, 331, 471, 506, 589, 597, 801
LmnI	GCTCC	3 cut(s)	89, 205, 214
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	2 cut(s)	686, 763
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	408, 523
MalI	GATC	7 cut(s)	149, 333, 473, 508, 591, 599, 803
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	7 cut(s)	147, 331, 471, 506, 589, 597, 801
MboII	GAAGA	3 cut(s)	46, 583, 717
MhlI	GDGCHC	1 cut(s)	399
MlsI	TGGCCA	1 cut(s)	718
MluCI	AATT	4 cut(s)	348, 499, 808, 821
MluNI	TGGCCA	1 cut(s)	718
MlyI	GAGTC	3 cut(s)	363, 536, 685
MmeI	TCCRAC	2 cut(s)	123, 159
Mox20I	TGGCCA	1 cut(s)	718
MscI	TGGCCA	1 cut(s)	718
MseI	TTAA	2 cut(s)	807, 837
Msp20I	TGGCCA	1 cut(s)	718
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	208, 214, 458
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	7 cut(s)	147, 331, 471, 506, 589, 597, 801
NlaIII	CATG	3 cut(s)	313, 482, 717
NruI	TCGCGA	1 cut(s)	336
NspI	RCATGY	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 188
PfeI	GAWTC	2 cut(s)	286, 338
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	178, 210
PleI	GAGTC	3 cut(s)	362, 536, 685
PpsI	GAGTC	3 cut(s)	362, 536, 685
PshBI	ATTAAT	1 cut(s)	807
PsiI	TTATAA	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	399
PsyI	GACNNNGTC	1 cut(s)	104
RruI	TCGCGA	1 cut(s)	336
RsaI	GTAC	4 cut(s)	366, 579, 665, 814
RsaNI	GTAC	4 cut(s)	365, 578, 664, 813
SacI	GAGCTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	807, 837
SatI	GCNGC	2 cut(s)	177, 209
Sau3AI	GATC	7 cut(s)	147, 331, 471, 506, 589, 597, 801
SchI	GAGTC	3 cut(s)	363, 536, 685
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	2 cut(s)	686, 763
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	348, 499, 808, 821
SsiI	CCGC	5 cut(s)	34, 82, 139, 177, 202
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	629, 756
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	4 cut(s)	341, 352, 600, 694
TasI	AATT	4 cut(s)	348, 499, 808, 821
TatI	WGTACW	3 cut(s)	364, 663, 812
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	286, 338
Tru1I	TTAA	2 cut(s)	807, 837
Tru9I	TTAA	2 cut(s)	807, 837
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	3 cut(s)	176, 298, 861
TspRI	CASTG	1 cut(s)	411
Tth111I	GACNNNGTC	1 cut(s)	104
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	3 cut(s)	348, 499, 821
XceI	RCATGY	1 cut(s)	482
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.