Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002975

Physical Location & Seq

Genomic Coordinates Reverse (-)

31627892 .. 31630836

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56695

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGGTTCATGGACAATGCGGTGCGTTTCGAACGCGAATCTAATAGAATTCGAGTCAAGTATGTACTGAGCATTGATGGGAACCATGGGATTGAGCTCAAGACAGTGTTACAAGCTTTGGATATGGTTGGCATTTTACACTATGGACTTGCTAAAGTAGCTGACTTGATGATCAAGCATGTCATCTCTCCAGCTCTGAATTCTGGATCGCCTGTGTCCTTTGTAACAGAAATAAATCCAGACTCACAAGCAATGACTGAGGCGACACTGAAGATTGTACCATCAAATGATCCTAAGATTGAAAGAATGGACGGGGAGACTATCTATCCAAGGATTATTGAGGTTATAAAGTTTATTGACAAGTACATTTGCTTTCAAGAGGGTTCTTGGACTCGATGCTTTGGAAGATTGACATGGCCAAGAATATCGAAGTTGATTATTTCTAAGTTTCTTTCCAAGGTTGTCCCCCAAGATGCTTCAAAACTTGCAGACTTTCTAAAGATCATTAATTGTACTTCTGAATTTGAGACTGCTTTAAGGGAGATGAAGTTTATTTCAGTATCCGAAAACAAAGATAACCAGTTGAGCAGTTTCTCTGAAAACGTTGAGGTTTCACTTTTCATCCAGGAAGAAGACAGAAATCTTGGGAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

218

Amino Acids

24.83

Weight (kDa)

6.34

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zw10_middle	PF20665	1 - 204	8e-41	Centromere/kinetochore protein zw10, middle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32900
fragaria_vesca	FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900
malus_domestica	MD09G1116200.v1.1 MD17G1107900.v1.1
prunus_persica	Prupe.3G208500_v2.0.a1
pyrus_communis	pycom09g04060 pycom17g10050
rosa_chinensis	RchiOBHm_Chr0c20g0500271 RchiOBHm_Chr1g0340131 RchiOBHm_Chr1g0340141 RchiOBHm_Chr2g0157781
rosa_laevigata	RLG00000021018 RLG00000028993
rosa_multiflora	Rmu_co8468091.1_g000001 Rmu_sc0001275.1_g000033 Rmu_sc0010800.1_g000004 Rmu_sc0018661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091960 Rroxscaffold_4G00311000
rosa_rugosa	Rorug02G0463300 Rorug02G0463300
rosa_samantha	Rh1AG180900 Rh1CG167700 Rh1DG181000 Rh1DG181100 Rh2AG528800 Rh2BG542700 Rh2CG513100 Rh2DG551700
rosa_wichuraiana	Rw1G015020 Rw2G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	20
AclI	AACGTT	1 cut(s)	603
AclWI	GGATC	2 cut(s)	214, 284
AcoI	YGGCCR	1 cut(s)	416
AcsI	RAATTY	3 cut(s)	48, 199, 521
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	4 cut(s)	66, 279, 365, 514
AgsI	TTSAA	3 cut(s)	302, 377, 480
AjnI	CCWGG	1 cut(s)	624
AluBI	AGCT	5 cut(s)	97, 116, 161, 194, 654
AluI	AGCT	5 cut(s)	97, 116, 161, 194, 654
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	2 cut(s)	311, 521
AlwI	GGATC	2 cut(s)	214, 284
AoxI	GGCC	1 cut(s)	416
ApoI	RAATTY	3 cut(s)	48, 199, 521
AseI	ATTAAT	1 cut(s)	507
AsuII	TTCGAA	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	2 cut(s)	71, 289
BciT130I	CCWGG	1 cut(s)	626
BciVI	GTATCC	1 cut(s)	571
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	311, 521
BfaI	CTAG	1 cut(s)	655
BfuI	GTATCC	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	626
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	2 cut(s)	386, 463
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	1 cut(s)	174
Bpu14I	TTCGAA	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	85, 329, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	3 cut(s)	85, 329, 456
BseGI	GGATG	1 cut(s)	621
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	59, 249
BseNI	ACTGG	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	449
BsmAI	GTCTC	2 cut(s)	311, 521
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	418
Bsp119I	TTCGAA	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	171, 206, 289, 501
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	2 cut(s)	60, 250
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	214, 284
BspQI	GCTCTTC	1 cut(s)	644
BspT104I	TTCGAA	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	3 cut(s)	85, 329, 456
BssMI	GATC	4 cut(s)	171, 206, 289, 501
BssT1I	CCWWGG	3 cut(s)	85, 329, 456
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	644
BstBI	TTCGAA	1 cut(s)	30
BstDEI	CTNAG	4 cut(s)	68, 258, 294, 444
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	621
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	174, 209, 292, 504
BstMAI	GTCTC	2 cut(s)	311, 521
BstMBI	GATC	4 cut(s)	171, 206, 289, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	626
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	624
BstUI	CGCG	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	621
BtsIMutI	CAGTG	2 cut(s)	111, 266
Csp6I	GTAC	4 cut(s)	65, 278, 364, 513
CviAII	CATG	4 cut(s)	10, 86, 179, 414
CviJI	RGCY	6 cut(s)	97, 116, 161, 194, 418, 654
CviKI_1	RGCY	6 cut(s)	97, 116, 161, 194, 418, 654
CviQI	GTAC	4 cut(s)	65, 278, 364, 513
DdeI	CTNAG	4 cut(s)	68, 258, 294, 444
DpnI	GATC	4 cut(s)	173, 208, 291, 503
DpnII	GATC	4 cut(s)	171, 206, 289, 501
EaeI	YGGCCR	1 cut(s)	416
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	3 cut(s)	85, 329, 456
Eco24I	GRGCYC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	97
EcoRI	GAATTC	2 cut(s)	48, 199
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	3 cut(s)	85, 329, 456
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	3 cut(s)	85, 329, 456
FaeI	CATG	4 cut(s)	13, 89, 182, 417
FaiI	YATR	8 cut(s)	11, 63, 87, 125, 144, 180, 347, 415
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	4 cut(s)	9, 85, 178, 413
FbaI	TGATCA	1 cut(s)	171
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	655
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	418
Hin1II	CATG	4 cut(s)	13, 89, 182, 417
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	4 cut(s)	38, 54, 242, 391
Hpy188I	TCNGA	4 cut(s)	198, 520, 565, 598
Hpy188III	TCNNGA	4 cut(s)	100, 204, 239, 377
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	4 cut(s)	68, 258, 294, 444
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	4 cut(s)	13, 89, 182, 417
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	171, 206, 289, 501
LguI	GCTCTTC	1 cut(s)	644
LpnPI	CCDG	7 cut(s)	189, 204, 225, 252, 593, 611, 638
LweI	GCATC	2 cut(s)	386, 463
MaeI	CTAG	1 cut(s)	655
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	2 cut(s)	108, 223
MalI	GATC	4 cut(s)	173, 208, 291, 503
MboI	GATC	4 cut(s)	171, 206, 289, 501
MboII	GAAGA	4 cut(s)	283, 417, 641, 644
MhlI	GDGCHC	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	418
MluCI	AATT	4 cut(s)	48, 199, 508, 521
MluNI	TGGCCA	1 cut(s)	418
MlyI	GAGTC	3 cut(s)	63, 236, 385
MnlI	CCTC	4 cut(s)	253, 334, 373, 601
Mox20I	TGGCCA	1 cut(s)	418
MscI	TGGCCA	1 cut(s)	418
MseI	TTAA	2 cut(s)	507, 536
Msp20I	TGGCCA	1 cut(s)	418
MspR9I	CCNGG	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	626
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	4 cut(s)	171, 206, 289, 501
NlaIII	CATG	4 cut(s)	13, 89, 182, 417
NlaIV	GGNNCC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	182
NspV	TTCGAA	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	644
PfeI	GAWTC	1 cut(s)	38
PfoI	TCCNGGA	1 cut(s)	624
PleI	GAGTC	3 cut(s)	62, 236, 385
PpsI	GAGTC	3 cut(s)	62, 236, 385
PshBI	ATTAAT	1 cut(s)	507
PsiI	TTATAA	1 cut(s)	347
Psp124BI	GAGCTC	1 cut(s)	99
Psp1406I	AACGTT	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	83
RsaI	GTAC	4 cut(s)	66, 279, 365, 514
RsaNI	GTAC	4 cut(s)	65, 278, 364, 513
SacI	GAGCTC	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	2 cut(s)	507, 536
Sau3AI	GATC	4 cut(s)	171, 206, 289, 501
SchI	GAGTC	3 cut(s)	63, 236, 385
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	2 cut(s)	386, 463
SfuI	TTCGAA	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	48, 199, 508, 521
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	655
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	3 cut(s)	85, 329, 456
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	4 cut(s)	30, 52, 394, 428
TasI	AATT	4 cut(s)	48, 199, 508, 521
TatI	WGTACW	3 cut(s)	64, 363, 512
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	507, 536
Tru9I	TTAA	2 cut(s)	507, 536
TscAI	CASTG	2 cut(s)	111, 273
TspDTI	ATGAA	2 cut(s)	560, 610
TspRI	CASTG	2 cut(s)	111, 273
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	3 cut(s)	48, 199, 521
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.