Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002975

Physical Location & Seq

Genomic Coordinates Reverse (-)

31625833 .. 31627890

Gene Structure 2058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGTTAGTGCACAAGACACTTGAGGATGTCTGCTTGTCATCCCCTAGAGTTGCATTGGAATTTTATCATGCTGCTAGGGATGTACTACTTCTATATGAAGTTGTTATACCTGTCAAGCGAGAACGGCAGCTTGATGGCATCAACCAGGTTGCTGTTCTGATGCATAACGATTGCCTTTATCCATCTCAGGAGATTCTTGGGTTTGCATTTGAGTATCGCTCAGACTTTCCAACTTCAATGAAAGATCATGCTTTGTTAAGTTTGTTTGTTGATATGGCTCCAAGATTTCATCTCATGGCAGAGGAAATACTGCAGAGACAAATCCAAGTTGTGATTCATAGCTTGAGAGAGGCTCTAGATGTCGCTGATGGATTCCAGAATACCCATCAAATGCAACAATTCCAATCTGCAAAATTTAGTATAGATCAGGTTGTTTTCATACTGGAGAAAGTACACATTATATGGGAGCCACTCTTATTGCCTTTAACTTACAAGAGAAGCCTGTGTATGGTTCTAGAGTCGGTTTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

178

Amino Acids

20.73

Weight (kDa)

5.71

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZW10_C	PF20666	1 - 118	7.9e-32	Centromere/kinetochore protein zw10, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32900
fragaria_vesca	FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900
malus_domestica	MD09G1116200.v1.1 MD17G1107900.v1.1
prunus_persica	Prupe.3G208500_v2.0.a1
pyrus_communis	pycom09g04060 pycom17g10050
rosa_chinensis	RchiOBHm_Chr0c20g0500271 RchiOBHm_Chr1g0340131 RchiOBHm_Chr1g0340141 RchiOBHm_Chr2g0157781
rosa_laevigata	RLG00000021018 RLG00000028993
rosa_multiflora	Rmu_co8468091.1_g000001 Rmu_sc0001275.1_g000033 Rmu_sc0010800.1_g000004 Rmu_sc0018661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091960 Rroxscaffold_4G00311000
rosa_rugosa	Rorug02G0463300 Rorug02G0463300
rosa_samantha	Rh1AG180900 Rh1CG167700 Rh1DG181000 Rh1DG181100 Rh2AG528800 Rh2BG542700 Rh2CG513100 Rh2DG551700
rosa_wichuraiana	Rw1G015020 Rw2G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	62, 416
AfaI	GTAC	2 cut(s)	87, 456
AfiI	CCNNNNNNNGG	1 cut(s)	511
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	147
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	2 cut(s)	133, 345
AluI	AGCT	2 cut(s)	133, 345
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	313
Alw44I	GTGCAC	1 cut(s)	11
ApaLI	GTGCAC	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	74, 130
ApoI	RAATTY	2 cut(s)	62, 416
BaeGI	GKGCMC	1 cut(s)	15
BarI	GAAGNNNNNNTAC	2 cut(s)	93, 125
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	61, 142
BccI	CCATC	4 cut(s)	131, 193, 365, 396
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	5 cut(s)	48, 78, 359, 518, 535
BfmI	CTRYAG	1 cut(s)	314
BisI	GCNGC	2 cut(s)	75, 131
BlsI	GCNGC	2 cut(s)	76, 132
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	282, 471
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	150, 153
BplI	GAGNNNNNCTC	4 cut(s)	206, 238, 340, 372
BpmI	CTGGAG	1 cut(s)	467
BpuEI	CTTGAG	2 cut(s)	44, 367
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse1I	ACTGG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	3 cut(s)	34, 41, 88
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMII	CTCAG	2 cut(s)	203, 237
BseNI	ACTGG	1 cut(s)	450
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	61, 142
BsiHKAI	GWGCWC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	247, 427
BspCNI	CTCAG	2 cut(s)	202, 236
BspLI	GGNNCC	2 cut(s)	282, 471
BspMAI	CTGCAG	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	450
BssMI	GATC	2 cut(s)	247, 427
Bst2UI	CCWGG	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	189, 223
BstF5I	GGATG	3 cut(s)	34, 41, 88
BstKTI	GATC	2 cut(s)	250, 430
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	2 cut(s)	247, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	61, 142
BtsCI	GGATG	3 cut(s)	34, 41, 88
CsiI	ACCWGGT	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	86, 455
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	3 cut(s)	71, 251, 298
CviJI	RGCY	6 cut(s)	133, 281, 345, 356, 472, 504
CviKI_1	RGCY	6 cut(s)	133, 281, 345, 356, 472, 504
CviQI	GTAC	2 cut(s)	86, 455
DdeI	CTNAG	2 cut(s)	189, 223
DpnI	GATC	2 cut(s)	249, 429
DpnII	GATC	2 cut(s)	247, 427
EcoRII	CCWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	168
FaeI	CATG	3 cut(s)	74, 254, 301
FatI	CATG	3 cut(s)	70, 250, 297
Fnu4HI	GCNGC	2 cut(s)	75, 131
FokI	GGATG	3 cut(s)	28, 41, 95
Fsp4HI	GCNGC	2 cut(s)	75, 131
FspBI	CTAG	5 cut(s)	48, 78, 359, 518, 535
GluI	GCNGC	2 cut(s)	75, 131
GsuI	CTGGAG	1 cut(s)	467
Hin1II	CATG	3 cut(s)	74, 254, 301
HinfI	GANTC	4 cut(s)	196, 337, 375, 521
Hpy166II	GTNNAC	2 cut(s)	13, 457
Hpy188I	TCNGA	2 cut(s)	162, 226
Hpy188III	TCNNGA	4 cut(s)	191, 359, 379, 518
Hpy8I	GTNNAC	2 cut(s)	13, 457
HpyCH4V	TGCA	7 cut(s)	13, 56, 166, 209, 316, 397, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	189, 223
Hsp92II	CATG	3 cut(s)	74, 254, 301
Kzo9I	GATC	2 cut(s)	247, 427
LmnI	GCTCC	2 cut(s)	286, 469
LpnPI	CCDG	8 cut(s)	126, 134, 161, 176, 392, 416, 431, 518
Lsp1109I	GCAGC	2 cut(s)	61, 142
LweI	GCATC	2 cut(s)	150, 153
MabI	ACCWGGT	1 cut(s)	147
MaeI	CTAG	5 cut(s)	48, 78, 359, 518, 535
MalI	GATC	2 cut(s)	249, 429
MboI	GATC	2 cut(s)	247, 427
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	62, 401, 416
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	19, 298, 346
Mph1103I	ATGCAT	1 cut(s)	168
MseI	TTAA	2 cut(s)	260, 488
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	2 cut(s)	247, 427
NlaIII	CATG	3 cut(s)	74, 254, 301
NlaIV	GGNNCC	2 cut(s)	282, 471
NsiI	ATGCAT	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	196, 337, 375
PkrI	GCNGC	2 cut(s)	76, 132
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	282, 471
PstI	CTGCAG	1 cut(s)	318
RsaI	GTAC	2 cut(s)	87, 456
RsaNI	GTAC	2 cut(s)	86, 455
SaqAI	TTAA	2 cut(s)	260, 488
SatI	GCNGC	2 cut(s)	75, 131
Sau3AI	GATC	2 cut(s)	247, 427
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	5 cut(s)	115, 135, 153, 347, 435
SexAI	ACCWGGT	1 cut(s)	147
SfaNI	GCATC	2 cut(s)	150, 153
SfcI	CTRYAG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	23, 346
SmoI	CTYRAG	2 cut(s)	23, 346
Sse9I	AATT	3 cut(s)	62, 401, 416
SspMI	CTAG	5 cut(s)	48, 78, 359, 518, 535
StyD4I	CCNGG	1 cut(s)	147
TasI	AATT	3 cut(s)	62, 401, 416
TatI	WGTACW	2 cut(s)	85, 454
TfiI	GAWTC	3 cut(s)	196, 337, 375
Tru1I	TTAA	2 cut(s)	260, 488
Tru9I	TTAA	2 cut(s)	260, 488
TseI	GCWGC	2 cut(s)	74, 130
TspDTI	ATGAA	6 cut(s)	17, 114, 257, 281, 329, 430
VneI	GTGCAC	1 cut(s)	11
XapI	RAATTY	2 cut(s)	62, 416
XbaI	TCTAGA	2 cut(s)	358, 517
XspI	CTAG	5 cut(s)	48, 78, 359, 518, 535
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.