Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009004

Physical Location & Seq

Genomic Coordinates Forward (+)

33474800 .. 33482452

Gene Structure 7653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2973 bp

ATGTATATAGCCACAGCCTCCTCCTCTGCCTCCGCTCTTCTCAGAGCTTCCAGGGCACGATTCTTCTCCTCTTCCACTTCCACTCTTTCCAGAACCTTCTTGCCTTCACCGCCTCGGGCCTCGCCGCGTAGCTTCACCGCTCAAAGGCTTCTCAGCTCCTCCGCCGCCACTCGGTGGAGCCACGGCGTCCATTGGCGCGCTCCTTACACGCTTCGCTCTCAGATCAGGGCCATCGCTCCCGTCGTTGAACGCGTCCAGCGTAGGATCGCTACCATGGCTCCGGAAAGTCATCCGTTCAAGGAGCATTTGACAAGTCTGCCGAAGCCTGGAGGCGGCGAGTATGGGAAGTTCTATAGCCTTACTTCACTGAAAGACCCGAGGATCGATAGGTTGCCGTACTCTATCAGAATCCTGCTTGAATCTGCTATTCGTAATTGTGACAACTTCCAAGTCAAGAAGGAAGATGTTGAGAAGATTCTTGATTGGGAGATTACTGCTCCAAAGCAAGTTGAAATTCCTTTCAAGCCTGCTCGTGTACTCTTGCAGGACTTTACTGGAGTGCCAGCTGTGGTTGACCTTGCTGTAATGCGTGATGCTATGAACAATCTTGGCAGTGATTCGAACAAGATCAATCCCTTGGTTCCTGTTGATCTTGTTGTTGATCACTCCGTTCAAGTTGACGTTGCAAGATCAGAAAATGCAGTGCAGGCAAATATGGAGCTAGAATTCTCGAGAAACCAGGAGAGATTTGCTTTCCTTAAATGGGGGTCTACTGCTTTCCAAAATATGCTTGTTGTTCCACCTGGTTCTGGCATTGTTCATCAGGTTAATCTCGAGTATCTTGGACGGGTTGTGTTCAACACTAACGGCTTACTCTACCCCGATAGTGTGGTTGGAACTGATTCCCATACAACCATGATTGATGGTTTGGGAGTAGCTGGCTGGGGAGTTGGGGGTATTGAAGCAGAAGCTACTATGCTTGGTCAGCCCATGAGCATGGTGTTGCCTGGAGTTGTTGGATTCAAGTTATCTGGAAAGTTGAACAATGGTGTTACTGCTACCGACTTGGTCTTGACTGTCACACAAATGCTGAGGAAGCATGGAGTTGTGGGAAAATTCGTTGAGTTTTATGGGGGCGGTATGGGTGAACTATCTTTAGCTGACAGGGCAACTATTGCCAATATGTCTCCTGAATATGGTGCAACCATGGGTTTCTTCCCAGTAGATCATGTCACTTTACAATATCTCAAATTGACTGGTAGAACTGATGAAACTGTGGCAATGATTGAAGGTTATCTCCGGGCAAATAAATTGTTTGTTGACTATAACGAGCCTGAATCAGAAAGAGTTTACTCATCTTACCTGGAATTGGACCTTTCACAAGTGGAGCCCTGTATCTCCGGACCAAAGAGACCTCATGATCGTGTGACCTTGAAGGATATGAAAGCTGACTGGCATGCCTGTCTTGATAACAAAGTTGGGTTCAAGGGATTTGCTATACCAAAAGAGGTACAAGACAAAGAGGTGAAGTTTTCATTCCATGGGCAGCCAGCAGAGCTTAAGCATGGTAGTGTTGTCATTGCTGCCATAACCAGTTGCACCAATACATCAAACCCAAGTGTTATGCTTGGGGCTGCTCTTGTTGCAAAAAAGGCCTGTGATCTTGGTCTACGGGTCAAGCCATGGGTAAAAACAAGTCTTGCACCGGGTTCCGGAGTTGTTACAAAATATTTGCTCCAGAGTGGATTGCAAAAGTATCTAAATGAACAGGGTTTCAATATTGTTGGATATGGATGCACAACATGCATTGGAAATTCTGGGGACTTAGATGAATCTGTTGCATCTGCCATAACCGAAAATGACATAGTAGCAGCTGCTGTGCTTTCTGGAAACAGGAACTTTGAAGGCCGGGTACATCCATTGACAAGAGCTAATTACCTTGCCTCACCACCTTTAGTGGTTGCTTATGCCCTTGCTGGCACGGTTGACATCGATTTCGATAAGGAGCCAATTGGAACAGGCAAGGACGGGAAGAGCGTCTATTTTAGGGACATCTGGCCATCTTCAGAAGAGATTGCCCAGGTTGTGCAATCCAGTGTGTTGCCAGAAATGTTCAGAAGCACTTATGAGTCTATTACTAAAGGCAACCCCATGTGGAATCAGCTATCAGTTCCAGAAACTAAACTTTATTCATGGGACCCTAACTCAACCTATATTCATGAGCCCCCATACTTCAAGGGCATGACCATGGATCCTCCTGGTGCTCATGGAGTGAAGGATGCCTACTGTCTGTTAAACTTTGGTGACAGTATTACAACAGATCACATCTCCCCAGCAGGAAGCATCCACAAGGACAGTCCTGCTGCAAAGTACCTTCTTGAACGCGGAGTGGATCGCAAGGACTTCAATTCCTATGGAAGTCGTCGTGGCAATGATGAAGTGATGGCAAGAGGAACTTTTGCCAATATTCGCCTTGTCAATAAGCTATTGAATGGAGAAGTGGGTCCTAAAACAGTTCACGTTCCTTCCGGAGAGAAACTCTCCGTCTTCGATGCTGCAATGAAATACAAGTCTGCTGGGCAGGACACCATTGTTTTGGCTGGTGCTGAGTATGGAAGTGGAAGCTCCCGGGATTGGGCTGCCAAGGGCCCAATGTTGTTGGGTGTTAAAGCAGTGATTTCTAAAAGTTTTGAGAGAATCCATCGCAGTAATTTGGTTGGTATGGGTATTATTCCACTTTGTTTCAAAGCTGGCGAGGATGCAGATACACTAGGATTGACTGGTCATGAACGTTATACCATTGACCTTCCTAGCAACATCAGTGAGATAAAGCCCGGCCAAGATGTGACTGTCACTACAGACAGTGGAAAGTCTTTCGTATGCACAGTGCGCTTTGATACTGAGGTGGAATTGGCTTACTTCAACCACGGAGGTATCCTTCCCTATGTGATAAGGAACCTGAGCAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0003994 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0006082 GO:0006101 GO:0006102 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031090 GO:0031667 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048856 GO:0050896 GO:0071704 GO:0071944 GO:0072350 GO:0090351 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

991

Amino Acids

108.01

Weight (kDa)

7.08

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	157 - 660	4.1e-168	Aconitase family (aconitate hydratase)
Aconitase_C	PF00694	789 - 917	1.5e-41	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05710
fragaria_vesca	FvH4_6g43190
malus_domestica	MD09G1108800.v1.1 MD17G1096700.v1.1
prunus_persica	Prupe.3G217300_v2.0.a1 Prupe.3G217300_v2.0.a1
pyrus_communis	pycom09g03120 pycom17g09260
rosa_chinensis	RchiOBHm_Chr2g0159291
rosa_laevigata	RLG00000021152
rosa_multiflora	Rmu_sc0004800.1_g000001 Rmu_sc0007806.1_g000010 Rmu_sc0010590.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090620
rosa_rugosa	Rorug02G0475700
rosa_samantha	Rh2AG542100 Rh2BG554700 Rh2CG524800 Rh2DG564400 Rh5AG522200
rosa_wichuraiana	Rw2G044840 Rw5G048460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	174
AccBSI	CCGCTC	2 cut(s)	35, 140
AccI	GTMKAC	2 cut(s)	770, 1669
AccII	CGCG	4 cut(s)	127, 198, 252, 2385
AccIII	TCCGGA	4 cut(s)	280, 1400, 1712, 2528
AciI	CCGC	9 cut(s)	33, 110, 125, 138, 162, 165, 333, 1137, 2385
AclI	AACGTT	1 cut(s)	2791
AclWI	GGATC	5 cut(s)	272, 389, 2246, 2259, 2400
AcoI	YGGCCR	2 cut(s)	2057, 2836
AcsI	RAATTY	4 cut(s)	513, 725, 1115, 1813
AcuI	CTGAAG	1 cut(s)	2049
AcyI	GRCGYC	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	174
AfaI	GTAC	5 cut(s)	398, 537, 1512, 1914, 2372
AflII	CTTAAG	1 cut(s)	1559
AflIII	ACRYGT	1 cut(s)	250
AjnI	CCWGG	8 cut(s)	50, 325, 738, 802, 1006, 1362, 2079, 2257
Alw21I	GWGCWC	1 cut(s)	2266
Alw26I	GTCTC	2 cut(s)	1191, 1405
AlwI	GGATC	5 cut(s)	272, 389, 2246, 2259, 2400
AlwNI	CAGNNNCTG	1 cut(s)	1877
Ama87I	CYCGRG	5 cut(s)	114, 376, 730, 833, 2628
Aor13HI	TCCGGA	4 cut(s)	280, 1400, 1712, 2528
AoxI	GGCC	7 cut(s)	117, 228, 1653, 1906, 2057, 2647, 2836
ApaI	GGGCCC	1 cut(s)	2651
ApeKI	GCWGC	8 cut(s)	1546, 1583, 1634, 1871, 1874, 2363, 2555, 2639
ApoI	RAATTY	4 cut(s)	513, 725, 1115, 1813
ArsI	GACNNNNNNTTYG	2 cut(s)	1979, 2011
Asp700I	GAANNNNTTC	1 cut(s)	901
AspLEI	GCGC	3 cut(s)	198, 200, 2892
AspS9I	GGNCC	8 cut(s)	117, 228, 1372, 1403, 2197, 2504, 2647, 2648
AsuC2I	CCSGG	6 cut(s)	1301, 1707, 1910, 2629, 2630, 2835
AsuHPI	GGTGA	6 cut(s)	99, 127, 1157, 1537, 1938, 2315
AsuII	TTCGAA	1 cut(s)	620
AvaI	CYCGRG	5 cut(s)	114, 376, 730, 833, 2628
AvaII	GGWCC	4 cut(s)	1372, 1403, 2197, 2504
BaeGI	GKGCMC	2 cut(s)	58, 2651
BaeI	ACNNNNGTAYC	4 cut(s)	2889, 2917, 2922, 2950
BalI	TGGCCA	1 cut(s)	2059
BamHI	GGATCC	1 cut(s)	2251
BanII	GRGCYC	3 cut(s)	1392, 2226, 2651
BarI	GAAGNNNNNNTAC	4 cut(s)	1896, 1928, 2267, 2299
BauI	CACGAG	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	2539
Bbv12I	GWGCWC	1 cut(s)	2266
BbvCI	CCTCAGC	1 cut(s)	1091
BbvI	GCAGC	8 cut(s)	1558, 1570, 1621, 1861, 1883, 2350, 2542, 2626
BccI	CCATC	5 cut(s)	239, 917, 2068, 2437, 2709
BceAI	ACGGC	3 cut(s)	199, 379, 883
BciT130I	CCWGG	8 cut(s)	52, 327, 740, 804, 1008, 1364, 2081, 2259
BciVI	GTATCC	1 cut(s)	2945
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	6 cut(s)	1301, 1707, 1910, 2629, 2630, 2835
BcoDI	GTCTC	2 cut(s)	1191, 1405
BfaI	CTAG	3 cut(s)	722, 2771, 2811
BfmI	CTRYAG	2 cut(s)	352, 2856
BfrI	CTTAAG	1 cut(s)	1559
BfuI	GTATCC	1 cut(s)	2945
Bme18I	GGWCC	4 cut(s)	1372, 1403, 2197, 2504
BmeT110I	CYCGRG	5 cut(s)	114, 376, 730, 833, 2628
BmgT120I	GGNCC	8 cut(s)	117, 228, 1372, 1403, 2197, 2504, 2647, 2648
BmrI	ACTGGG	1 cut(s)	1214
BmsI	GCATC	7 cut(s)	583, 1784, 1850, 2269, 2352, 2542, 2749
BmuI	ACTGGG	1 cut(s)	1214
BpiI	GAAGAC	1 cut(s)	2539
BplI	GAGNNNNNCTC	4 cut(s)	2523, 2555, 2525, 2557
BpmI	CTGGAG	4 cut(s)	348, 576, 1029, 1721
Bpu10I	CCTNAGC	2 cut(s)	1091, 2960
Bpu14I	TTCGAA	1 cut(s)	620
BpuMI	CCSGG	6 cut(s)	1301, 1707, 1910, 2629, 2630, 2835
Bsa29I	ATCGAT	2 cut(s)	384, 1992
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	1405
BsaWI	WCCGGW	4 cut(s)	280, 1400, 1712, 2528
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse1I	ACTGG	7 cut(s)	559, 1220, 1261, 1457, 1593, 2094, 2785
Bse3DI	GCAATG	4 cut(s)	1287, 1578, 2437, 2565
BseAI	TCCGGA	4 cut(s)	280, 1400, 1712, 2528
BseBI	CCWGG	8 cut(s)	52, 327, 740, 804, 1008, 1364, 2081, 2259
BseCI	ATCGAT	2 cut(s)	384, 1992
BseGI	GGATG	6 cut(s)	289, 1799, 1915, 2284, 2343, 2764
BseMI	GCAATG	4 cut(s)	1287, 1578, 2437, 2565
BseMII	CTCAG	7 cut(s)	55, 166, 233, 1082, 2598, 2892, 2951
BseNI	ACTGG	7 cut(s)	559, 1220, 1261, 1457, 1593, 2094, 2785
BsePI	GCGCGC	1 cut(s)	196
BseRI	GAGGAG	4 cut(s)	10, 13, 58, 148
BseSI	GKGCMC	2 cut(s)	58, 2651
BseXI	GCAGC	8 cut(s)	1558, 1570, 1621, 1861, 1883, 2350, 2542, 2626
BseYI	CCCAGC	3 cut(s)	942, 2332, 2576
BsgI	GTGCAG	1 cut(s)	725
Bsh1236I	CGCG	4 cut(s)	127, 198, 252, 2385
BshFI	GGCC	7 cut(s)	119, 230, 1655, 1908, 2059, 2649, 2838
BshVI	ATCGAT	2 cut(s)	384, 1992
BsiHKAI	GWGCWC	1 cut(s)	2266
BsiHKCI	CYCGRG	5 cut(s)	114, 376, 730, 833, 2628
BsiSI	CCGG	9 cut(s)	281, 1300, 1401, 1706, 1713, 1909, 2529, 2629, 2835
BslFI	GGGAC	3 cut(s)	1835, 2063, 2210
BsmAI	GTCTC	2 cut(s)	1191, 1405
BsmFI	GGGAC	3 cut(s)	1835, 2063, 2210
BsnI	GGCC	7 cut(s)	119, 230, 1655, 1908, 2059, 2649, 2838
Bso31I	GGTCTC	1 cut(s)	1405
BsoBI	CYCGRG	5 cut(s)	114, 376, 730, 833, 2628
Bsp119I	TTCGAA	1 cut(s)	620
Bsp120I	GGGCCC	1 cut(s)	2647
Bsp1286I	GDGCHC	5 cut(s)	58, 1392, 2226, 2266, 2651
Bsp13I	TCCGGA	4 cut(s)	280, 1400, 1712, 2528
Bsp19I	CCATGG	5 cut(s)	273, 1206, 1540, 1682, 2247
BspACI	CCGC	9 cut(s)	33, 110, 125, 138, 162, 165, 333, 1137, 2385
BspANI	GGCC	7 cut(s)	119, 230, 1655, 1908, 2059, 2649, 2838
BspCNI	CTCAG	7 cut(s)	54, 165, 232, 1083, 2599, 2893, 2952
BspDI	ATCGAT	2 cut(s)	384, 1992
BspEI	TCCGGA	4 cut(s)	280, 1400, 1712, 2528
BspFNI	CGCG	4 cut(s)	127, 198, 252, 2385
BspHI	TCATGA	3 cut(s)	1417, 2218, 2785
BspPI	GGATC	5 cut(s)	272, 389, 2246, 2259, 2400
BspQI	GCTCTTC	2 cut(s)	42, 2027
BspT104I	TTCGAA	1 cut(s)	620
BspTI	CTTAAG	1 cut(s)	1559
BspTNI	GGTCTC	1 cut(s)	1405
BsrBI	CCGCTC	2 cut(s)	35, 140
BsrDI	GCAATG	4 cut(s)	1287, 1578, 2437, 2565
BsrI	ACTGG	7 cut(s)	559, 1220, 1261, 1457, 1593, 2094, 2785
BssHII	GCGCGC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	7 cut(s)	273, 636, 1206, 1540, 1682, 2247, 2643
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	8 cut(s)	52, 327, 740, 804, 1008, 1364, 2081, 2259
Bst6I	CTCTTC	4 cut(s)	42, 76, 2027, 2064
BstACI	GRCGYC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	1559
BstAPI	GCANNNNNTGC	2 cut(s)	1175, 1803
BstBI	TTCGAA	1 cut(s)	620
BstDEI	CTNAG	8 cut(s)	41, 152, 219, 1091, 1825, 2607, 2901, 2960
BstDSI	CCRYGG	7 cut(s)	181, 273, 1206, 1540, 1682, 2247, 2926
BstF5I	GGATG	6 cut(s)	289, 1799, 1915, 2284, 2343, 2764
BstFNI	CGCG	4 cut(s)	127, 198, 252, 2385
BstHHI	GCGC	3 cut(s)	198, 200, 2892
BstMAI	GTCTC	2 cut(s)	1191, 1405
BstNI	CCWGG	8 cut(s)	52, 327, 740, 804, 1008, 1364, 2081, 2259
BstNSI	RCATGY	2 cut(s)	1460, 1806
BstSFI	CTRYAG	2 cut(s)	352, 2856
BstSLI	GKGCMC	2 cut(s)	58, 2651
BstUI	CGCG	4 cut(s)	127, 198, 252, 2385
BstV1I	GCAGC	8 cut(s)	1558, 1570, 1621, 1861, 1883, 2350, 2542, 2626
BstV2I	GAAGAC	1 cut(s)	2539
BstX2I	RGATCY	1 cut(s)	2251
BstXI	CCANNNNNNTGG	2 cut(s)	997, 2596
BstYI	RGATCY	1 cut(s)	2251
Bsu15I	ATCGAT	2 cut(s)	384, 1992
BsuI	GTATCC	1 cut(s)	2945
BsuRI	GGCC	7 cut(s)	119, 230, 1655, 1908, 2059, 2649, 2838
BsuTUI	ATCGAT	2 cut(s)	384, 1992
BtgI	CCRYGG	7 cut(s)	181, 273, 1206, 1540, 1682, 2247, 2926
BtgZI	GCGATG	2 cut(s)	217, 2687
BtsCI	GGATG	6 cut(s)	289, 1799, 1915, 2284, 2343, 2764
BtsI	GCAGTG	3 cut(s)	619, 708, 2679
BtsIMutI	CAGTG	8 cut(s)	365, 619, 708, 2101, 2679, 2827, 2869, 2892
CaiI	CAGNNNCTG	1 cut(s)	1877
CciI	TCATGA	3 cut(s)	1417, 2218, 2785
CfoI	GCGC	3 cut(s)	198, 200, 2892
Cfr13I	GGNCC	8 cut(s)	117, 228, 1372, 1403, 2197, 2504, 2647, 2648
Cfr9I	CCCGGG	1 cut(s)	2628
ClaI	ATCGAT	2 cut(s)	384, 1992
CseI	GACGC	3 cut(s)	175, 241, 2026
CsiI	ACCWGGT	1 cut(s)	802
Csp6I	GTAC	5 cut(s)	397, 536, 1511, 1913, 2371
CviQI	GTAC	5 cut(s)	397, 536, 1511, 1913, 2371
DdeI	CTNAG	8 cut(s)	41, 152, 219, 1091, 1825, 2607, 2901, 2960
DraIII	CACNNNGTG	1 cut(s)	174
EaeI	YGGCCR	2 cut(s)	2057, 2836
Eam1104I	CTCTTC	4 cut(s)	42, 76, 2027, 2064
EarI	CTCTTC	4 cut(s)	42, 76, 2027, 2064
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	7 cut(s)	273, 636, 1206, 1540, 1682, 2247, 2643
Eco147I	AGGCCT	1 cut(s)	1655
Eco24I	GRGCYC	3 cut(s)	1392, 2226, 2651
Eco31I	GGTCTC	1 cut(s)	1405
Eco47I	GGWCC	4 cut(s)	1372, 1403, 2197, 2504
Eco57I	CTGAAG	1 cut(s)	2049
Eco88I	CYCGRG	5 cut(s)	114, 376, 730, 833, 2628
EcoO109I	RGGNCCY	3 cut(s)	2197, 2504, 2647
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	8 cut(s)	50, 325, 738, 802, 1006, 1362, 2079, 2257
EcoT14I	CCWWGG	7 cut(s)	273, 636, 1206, 1540, 1682, 2247, 2643
EcoT22I	ATGCAT	1 cut(s)	1808
EcoT38I	GRGCYC	3 cut(s)	1392, 2226, 2651
ErhI	CCWWGG	7 cut(s)	273, 636, 1206, 1540, 1682, 2247, 2643
FalI	AAGNNNNNCTT	2 cut(s)	2440, 2472
FaqI	GGGAC	3 cut(s)	1835, 2063, 2210
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	2 cut(s)	770, 1669
FokI	GGATG	6 cut(s)	276, 1806, 1902, 2291, 2330, 2771
FriOI	GRGCYC	3 cut(s)	1392, 2226, 2651
FspBI	CTAG	3 cut(s)	722, 2771, 2811
GlaI	GCGC	3 cut(s)	197, 199, 2891
GsaI	CCCAGC	3 cut(s)	946, 2336, 2580
GsuI	CTGGAG	4 cut(s)	348, 576, 1029, 1721
HaeIII	GGCC	7 cut(s)	119, 230, 1655, 1908, 2059, 2649, 2838
HapII	CCGG	9 cut(s)	281, 1300, 1401, 1706, 1713, 1909, 2529, 2629, 2835
HgaI	GACGC	3 cut(s)	175, 241, 2026
HhaI	GCGC	3 cut(s)	198, 200, 2892
Hin1I	GRCGYC	1 cut(s)	186
Hin6I	GCGC	3 cut(s)	196, 198, 2890
HinP1I	GCGC	3 cut(s)	196, 198, 2890
HincII	GTYRAC	4 cut(s)	574, 679, 1321, 1987
HindII	GTYRAC	4 cut(s)	574, 679, 1321, 1987
HpaII	CCGG	9 cut(s)	281, 1300, 1401, 1706, 1713, 1909, 2529, 2629, 2835
HphI	GGTGA	6 cut(s)	99, 127, 1157, 1537, 1938, 2315
Hpy188I	TCNGA	7 cut(s)	44, 222, 407, 694, 1342, 2068, 2117
Hpy99I	CGWCG	2 cut(s)	245, 2427
HpyCH4IV	ACGT	3 cut(s)	681, 2520, 2791
HpyF3I	CTNAG	8 cut(s)	41, 152, 219, 1091, 1825, 2607, 2901, 2960
HpySE526I	ACGT	3 cut(s)	681, 2520, 2791
Hsp92I	GRCGYC	1 cut(s)	186
HspAI	GCGC	3 cut(s)	196, 198, 2890
KflI	GGGWCCC	1 cut(s)	2197
Kpn2I	TCCGGA	4 cut(s)	280, 1400, 1712, 2528
Ksp22I	TGATCA	1 cut(s)	661
LguI	GCTCTTC	2 cut(s)	42, 2027
Lsp1109I	GCAGC	8 cut(s)	1558, 1570, 1621, 1861, 1883, 2350, 2542, 2626
LweI	GCATC	7 cut(s)	583, 1784, 1850, 2269, 2352, 2542, 2749
MabI	ACCWGGT	1 cut(s)	802
MaeI	CTAG	3 cut(s)	722, 2771, 2811
MaeII	ACGT	3 cut(s)	681, 2520, 2791
MaeIII	GTNAC	9 cut(s)	437, 1051, 1078, 1231, 1426, 1720, 2303, 2845, 2851
MbiI	CCGCTC	2 cut(s)	35, 140
MfeI	CAATTG	1 cut(s)	2010
MflI	RGATCY	1 cut(s)	2251
MhlI	GDGCHC	5 cut(s)	58, 1392, 2226, 2266, 2651
MlsI	TGGCCA	1 cut(s)	2059
MluI	ACGCGT	1 cut(s)	250
MluNI	TGGCCA	1 cut(s)	2059
MlyI	GAGTC	1 cut(s)	2138
MmeI	TCCRAC	3 cut(s)	874, 997, 1765
Mox20I	TGGCCA	1 cut(s)	2059
Mph1103I	ATGCAT	1 cut(s)	1808
MroI	TCCGGA	4 cut(s)	280, 1400, 1712, 2528
MroXI	GAANNNNTTC	1 cut(s)	901
MscI	TGGCCA	1 cut(s)	2059
MseI	TTAA	5 cut(s)	759, 828, 1560, 2294, 2667
MslI	CAYNNNNRTG	5 cut(s)	995, 1085, 1422, 1569, 2246
Msp20I	TGGCCA	1 cut(s)	2059
MspA1I	CMGCKG	2 cut(s)	566, 1874
MspCI	CTTAAG	1 cut(s)	1559
MspI	CCGG	9 cut(s)	281, 1300, 1401, 1706, 1713, 1909, 2529, 2629, 2835
MunI	CAATTG	1 cut(s)	2010
MvaI	CCWGG	8 cut(s)	52, 327, 740, 804, 1008, 1364, 2081, 2259
MvnI	CGCG	4 cut(s)	127, 198, 252, 2385
NciI	CCSGG	6 cut(s)	1301, 1707, 1910, 2629, 2630, 2835
NcoI	CCATGG	5 cut(s)	273, 1206, 1540, 1682, 2247
NmuCI	GTSAC	7 cut(s)	437, 1078, 1231, 1426, 2303, 2845, 2851
NsiI	ATGCAT	1 cut(s)	1808
NspI	RCATGY	2 cut(s)	1460, 1806
NspV	TTCGAA	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	1460
PaeR7I	CTCGAG	2 cut(s)	730, 833
PagI	TCATGA	3 cut(s)	1417, 2218, 2785
PauI	GCGCGC	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	1655
PciSI	GCTCTTC	2 cut(s)	42, 2027
PcsI	WCGNNNNNNNCGW	4 cut(s)	240, 249, 256, 2034
PdmI	GAANNNNTTC	1 cut(s)	901
PflFI	GACNNNGTC	1 cut(s)	1067
PflMI	CCANNNNNTGG	1 cut(s)	174
PleI	GAGTC	1 cut(s)	2137
PpsI	GAGTC	1 cut(s)	2137
PpuMI	RGGWCCY	2 cut(s)	2197, 2504
Psp1406I	AACGTT	1 cut(s)	2791
Psp5II	RGGWCCY	2 cut(s)	2197, 2504
Psp6I	CCWGG	8 cut(s)	50, 325, 738, 802, 1006, 1362, 2079, 2257
PspFI	CCCAGC	3 cut(s)	942, 2332, 2576
PspGI	CCWGG	8 cut(s)	50, 325, 738, 802, 1006, 1362, 2079, 2257
PspOMI	GGGCCC	1 cut(s)	2647
PspPI	GGNCC	8 cut(s)	117, 228, 1372, 1403, 2197, 2504, 2647, 2648
PspPPI	RGGWCCY	2 cut(s)	2197, 2504
PsrI	GAACNNNNNNTAC	2 cut(s)	332, 364
PstNI	CAGNNNCTG	1 cut(s)	1877
PsuI	RGATCY	1 cut(s)	2251
PsyI	GACNNNGTC	1 cut(s)	1067
PteI	GCGCGC	1 cut(s)	196
PvuII	CAGCTG	2 cut(s)	566, 1874
RsaI	GTAC	5 cut(s)	398, 537, 1512, 1914, 2372
RsaNI	GTAC	5 cut(s)	397, 536, 1511, 1913, 2371
RseI	CAYNNNNRTG	5 cut(s)	995, 1085, 1422, 1569, 2246
SapI	GCTCTTC	2 cut(s)	42, 2027
SaqAI	TTAA	5 cut(s)	759, 828, 1560, 2294, 2667
Sau96I	GGNCC	8 cut(s)	117, 228, 1372, 1403, 2197, 2504, 2647, 2648
SchI	GAGTC	1 cut(s)	2138
SduI	GDGCHC	5 cut(s)	58, 1392, 2226, 2266, 2651
SexAI	ACCWGGT	1 cut(s)	802
SfaNI	GCATC	7 cut(s)	583, 1784, 1850, 2269, 2352, 2542, 2749
SfcI	CTRYAG	2 cut(s)	352, 2856
Sfr274I	CTCGAG	2 cut(s)	730, 833
SfuI	TTCGAA	1 cut(s)	620
SinI	GGWCC	4 cut(s)	1372, 1403, 2197, 2504
SlaI	CTCGAG	2 cut(s)	730, 833
SmaI	CCCGGG	1 cut(s)	2630
SmiMI	CAYNNNNRTG	5 cut(s)	995, 1085, 1422, 1569, 2246
SmlI	CTYRAG	3 cut(s)	730, 833, 1559
SmoI	CTYRAG	3 cut(s)	730, 833, 1559
SphI	GCATGC	1 cut(s)	1460
SseBI	AGGCCT	1 cut(s)	1655
SsiI	CCGC	9 cut(s)	33, 110, 125, 138, 162, 165, 333, 1137, 2385
SspI	AATATT	3 cut(s)	1730, 1780, 2467
SspMI	CTAG	3 cut(s)	722, 2771, 2811
StuI	AGGCCT	1 cut(s)	1655
StyI	CCWWGG	7 cut(s)	273, 636, 1206, 1540, 1682, 2247, 2643
TaiI	ACGT	3 cut(s)	684, 2523, 2794
TaqI	TCGA	7 cut(s)	384, 620, 731, 834, 1992, 1998, 2550
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	3 cut(s)	127, 167, 336
Tru1I	TTAA	5 cut(s)	759, 828, 1560, 2294, 2667
Tru9I	TTAA	5 cut(s)	759, 828, 1560, 2294, 2667
TscAI	CASTG	8 cut(s)	372, 619, 708, 2101, 2679, 2827, 2869, 2892
TseFI	GTSAC	7 cut(s)	437, 1078, 1231, 1426, 2303, 2845, 2851
TseI	GCWGC	8 cut(s)	1546, 1583, 1634, 1871, 1874, 2363, 2555, 2639
Tsp45I	GTSAC	7 cut(s)	437, 1078, 1231, 1426, 2303, 2845, 2851
TspGWI	ACGGA	4 cut(s)	282, 658, 2533, 2943
TspMI	CCCGGG	1 cut(s)	2628
TspRI	CASTG	8 cut(s)	372, 619, 708, 2101, 2679, 2827, 2869, 2892
Tth111I	GACNNNGTC	1 cut(s)	1067
Van91I	CCANNNNNTGG	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	1559
VpaK11BI	GGWCC	4 cut(s)	1372, 1403, 2197, 2504
XapI	RAATTY	4 cut(s)	513, 725, 1115, 1813
XceI	RCATGY	2 cut(s)	1460, 1806
XhoI	CTCGAG	2 cut(s)	730, 833
XmaI	CCCGGG	1 cut(s)	2628
XmiI	GTMKAC	2 cut(s)	770, 1669
XmnI	GAANNNNTTC	1 cut(s)	901
XspI	CTAG	3 cut(s)	722, 2771, 2811
Zsp2I	ATGCAT	1 cut(s)	1808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.