Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009004

Physical Location & Seq

Genomic Coordinates Forward (+)

69981097 .. 69988771

Gene Structure 7675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG524800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGTATATAGCCACAGCCTCTTCCTCTGCCTCGGCTCTTCTCAGAGCTTCTAGGGCACGGTTCTTCTCCTCCTCCACTTCCACCTTGTCCAGAACCTTCTTGGCCGCGCCGCCCAAGCCTTCGTCGCATAGCTTCACCGCTCAGAGGCTTCTCAGCTCCTCGGCCGCCACTCGGTGGAGCCACGGCGTTCATTGGCGCGCTCCCTACACGCTTCGCTCTCAGATCAGAGCCATCGCTCCCGTCCTCGAACGCGTCCAGCGCGGGATCGCTACCATGGCTCCTGAGAGTCATCCATTCAAGGAGCATTTGACAGCTCTTCCCAAGCCAGGAGGCGGCGAGTATGGGAAGTTCTATAGCCTTACTTCACTGAAAGATCCGAGGATCGATAAGTTACCGTACTCTATCAGAATCCTGCTTGAATCTGCTATTCGTAATTGTGACAACTTCCAAGTAAAGAAGGAAGATGTTGAGAAAATTCTTGACTGGGAAAATACTGCTCCAAAGCAAGTTGAAATTCCTTTCAAGCCTGCTCGTGTACTCTTGCAGGACTTTACAGGAGTGCCAGCTGTGGTTGACCTTGCTGTAATGCGTGATGCTATGAACAATCTTGGCAGTGATTCTAACAAGATCAATCCCTTGGTTCCTGTTGATCTTGTTGTTGATCACTCCGTTCAAGTCGATGTTGCAAGATCAGAAAATGCAGTGCAGGCAAATATGGAGCTAGAATTCCAGAGAAACCGGGAGAGATTTGCTTTTCTTAAATGGGGTTCTACTGCTTTCCAAAATATGCTTGTTGTTCCACCTGGTTCTGGCATTGTTCATCAGGTCAATCTTGAATATCTTGGACGGGTTGTTTTCAACACTAATGGCTTGCTGTACCCCGACAGTGTGGTTGGAACTGATTCCCATACAACCATGATTGATGGTTTGGGAGTAGCTGGCTGGGGAGTTGGGGGTATTGAAGCAGAAGCTACTATGCTTGGTCAGCCCATGAGCATGGTGTTGCCTGGAGTTGTTGGGTTCAAGTTATCTGGAAAGTTGAACAATGGTGTTACTGCTACCGACTTGGTCTTGACTGTCACACAAATGCTGAGGAAGCATGGAGTTGTGGGAAAATTTGTTGAGTTTTATGGGGGTGGTATGGGTGAACTGTCGTTAGCCGACAGGGCTACTATTGCCAATATGTCTCCTGAATATGGTGCAACCATGGGGTTCTTCCCAGTAGATCATGTTACTTTACAATATCTCAAATTGACTGGTAGAAGCGATGAAACTGTGGCAATGATTGAAGGTTATCTTCGGGCAAATAAATTGTTTGTTGACTATAATGAGCCTGAATCAGAAAGAGTTTACTCATCTTACCTGGAATTGGACCTTTCACAAGTTGAGCCCTGTATTTCAGGACCAAAGAGACCTCATGATCGCGTGACCTTGAAAGATATGAAAGCTGACTGGCATGCCTGTCTTGATAACAAGGTTGGGTTCAAGGGATTTGCTATACCAAAAGAGGTACAAGACAAAGAGGTGAAGTTTTCATTCCATGGGCAGCCAGCAGAGCTTAAGCATGGTAGTGTTGTCATTGCTGCAATTACAAGCTGCACCAATACATCAAACCCAAGTGTCATGCTTGGGGCTGCTCTTGTTGCAAAAAAGGCCTGCGAACTTGGTCTACGGGTCAAGCCATGGGTAAAAACAAGTCTTGCCCCGGGTTCTGGAGTTGTTACAAAATATCTGCTCCAGAGTGGGTTGCAAAAGTATCTAAATGAACAGGGTTTCAATATTGTTGGATATGGATGCACGACATGCATTGGAAATTCAGGGGATTTAGATGAAAGTGTTGCTTCTGTCATAGCCGACAATGACATAGTAGCAGCTGCTGTGCTTTCTGGAAACAGGAACTTTGAGGGCCGTGTACATGCATTGACAAGGGCTAATTACCTTGCCTCACCTCCTTTAGTGGTTGCTTATGCCCTGGCTGGCACGGTACTCCCTTTTTACCTGCTTCGAGTGCAATTTACTTATTTTGTTCTTCATATTGGTGACTTCCCATATACAATAGTCAACTACCTTAGTTATACCCATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0003994 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0006082 GO:0006101 GO:0006102 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031090 GO:0031667 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048856 GO:0050896 GO:0071704 GO:0071944 GO:0072350 GO:0090351 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

695

Amino Acids

75.9

Weight (kDa)

8.44

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	157 - 660	1.7e-168	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05710
fragaria_vesca	FvH4_6g43190
malus_domestica	MD09G1108800.v1.1 MD17G1096700.v1.1
prunus_persica	Prupe.3G217300_v2.0.a1 Prupe.3G217300_v2.0.a1
pyrus_communis	pycom09g03120 pycom17g09260
rosa_chinensis	RchiOBHm_Chr2g0159291
rosa_laevigata	RLG00000021152
rosa_multiflora	Rmu_sc0004800.1_g000001 Rmu_sc0007806.1_g000010 Rmu_sc0010590.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090620
rosa_rugosa	Rorug02G0475700
rosa_samantha	Rh2AG542100 Rh2BG554700 Rh2CG524800 Rh2DG564400 Rh5AG522200
rosa_wichuraiana	Rw2G044840 Rw5G048460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2007
AccB7I	CCANNNNNTGG	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	1669
AccII	CGCG	5 cut(s)	107, 198, 252, 261, 1425
AciI	CCGC	6 cut(s)	105, 110, 138, 165, 261, 333
AclWI	GGATC	3 cut(s)	272, 368, 389
AcoI	YGGCCR	2 cut(s)	102, 162
AcsI	RAATTY	5 cut(s)	474, 513, 725, 1115, 1813
AdeI	CACNNNGTG	1 cut(s)	174
AfaI	GTAC	6 cut(s)	398, 537, 878, 1512, 1914, 1986
AfiI	CCNNNNNNNGG	9 cut(s)	144, 171, 174, 326, 332, 809, 1196, 1369, 1712
AflII	CTTAAG	1 cut(s)	1559
AflIII	ACRYGT	1 cut(s)	250
AjnI	CCWGG	5 cut(s)	325, 802, 1006, 1362, 1971
Alw26I	GTCTC	2 cut(s)	1191, 1405
AlwI	GGATC	3 cut(s)	272, 368, 389
AlwNI	CAGNNNCTG	1 cut(s)	1877
Ama87I	CYCGRG	1 cut(s)	1705
AoxI	GGCC	4 cut(s)	102, 162, 1653, 1906
ApeKI	GCWGC	6 cut(s)	1546, 1583, 1596, 1634, 1871, 1874
ApoI	RAATTY	5 cut(s)	474, 513, 725, 1115, 1813
Asp700I	GAANNNNTTC	1 cut(s)	901
AspLEI	GCGC	4 cut(s)	109, 198, 200, 261
AspS9I	GGNCC	3 cut(s)	1372, 1403, 1906
AsuC2I	CCSGG	3 cut(s)	740, 1706, 1707
AsuHPI	GGTGA	5 cut(s)	127, 1157, 1537, 1938, 2051
AvaI	CYCGRG	1 cut(s)	1705
AvaII	GGWCC	2 cut(s)	1372, 1403
BaeGI	GKGCMC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	1392
BauI	CACGAG	1 cut(s)	531
BbvCI	CCTCAGC	1 cut(s)	1091
BbvI	GCAGC	6 cut(s)	1558, 1570, 1583, 1621, 1861, 1883
BccI	CCATC	2 cut(s)	239, 917
BceAI	ACGGC	2 cut(s)	199, 1893
BciT130I	CCWGG	5 cut(s)	327, 804, 1008, 1364, 1973
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	3 cut(s)	740, 1706, 1707
BcoDI	GTCTC	2 cut(s)	1191, 1405
BfaI	CTAG	2 cut(s)	51, 722
BfmI	CTRYAG	1 cut(s)	352
BfrI	CTTAAG	1 cut(s)	1559
BfuAI	ACCTGC	1 cut(s)	2007
BglI	GCCNNNNNGGC	1 cut(s)	1166
Bme1390I	CCNGG	8 cut(s)	327, 740, 804, 1008, 1364, 1706, 1707, 1973
Bme18I	GGWCC	2 cut(s)	1372, 1403
BmeT110I	CYCGRG	1 cut(s)	1705
BmgT120I	GGNCC	3 cut(s)	1372, 1403, 1906
BmiI	GGNNCC	3 cut(s)	179, 279, 642
BmrFI	CCNGG	8 cut(s)	327, 740, 804, 1008, 1364, 1706, 1707, 1973
BmrI	ACTGGG	2 cut(s)	493, 1214
BmsI	GCATC	2 cut(s)	583, 1784
BmuI	ACTGGG	2 cut(s)	493, 1214
BpmI	CTGGAG	3 cut(s)	1029, 1721, 1734
Bpu10I	CCTNAGC	1 cut(s)	1091
BpuMI	CCSGG	3 cut(s)	740, 1706, 1707
Bsa29I	ATCGAT	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	1405
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	9 cut(s)	144, 171, 174, 326, 332, 809, 1196, 1369, 1712
Bse1I	ACTGG	4 cut(s)	488, 1220, 1261, 1457
Bse3DI	GCAATG	2 cut(s)	1287, 1578
BseBI	CCWGG	5 cut(s)	327, 804, 1008, 1364, 1973
BseCI	ATCGAT	1 cut(s)	384
BseGI	GGATG	2 cut(s)	289, 1799
BseLI	CCNNNNNNNGG	9 cut(s)	144, 171, 174, 326, 332, 809, 1196, 1369, 1712
BseMI	GCAATG	2 cut(s)	1287, 1578
BseMII	CTCAG	6 cut(s)	55, 155, 166, 233, 273, 1082
BseNI	ACTGG	4 cut(s)	488, 1220, 1261, 1457
BsePI	GCGCGC	1 cut(s)	196
BseRI	GAGGAG	3 cut(s)	58, 61, 148
BseSI	GKGCMC	1 cut(s)	58
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	6 cut(s)	1558, 1570, 1583, 1621, 1861, 1883
BseYI	CCCAGC	1 cut(s)	942
BsgI	GTGCAG	2 cut(s)	725, 1582
Bsh1236I	CGCG	5 cut(s)	107, 198, 252, 261, 1425
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	4 cut(s)	104, 164, 1655, 1908
BshVI	ATCGAT	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	1705
BsiSI	CCGG	2 cut(s)	739, 1706
BslI	CCNNNNNNNGG	9 cut(s)	144, 171, 174, 326, 332, 809, 1196, 1369, 1712
BsmAI	GTCTC	2 cut(s)	1191, 1405
BsnI	GGCC	4 cut(s)	104, 164, 1655, 1908
Bso31I	GGTCTC	1 cut(s)	1405
BsoBI	CYCGRG	1 cut(s)	1705
Bsp1286I	GDGCHC	2 cut(s)	58, 1392
Bsp1407I	TGTACA	1 cut(s)	1912
Bsp19I	CCATGG	4 cut(s)	273, 1206, 1540, 1682
BspACI	CCGC	6 cut(s)	105, 110, 138, 165, 261, 333
BspANI	GGCC	4 cut(s)	104, 164, 1655, 1908
BspCNI	CTCAG	6 cut(s)	54, 154, 165, 232, 274, 1083
BspDI	ATCGAT	1 cut(s)	384
BspFNI	CGCG	5 cut(s)	107, 198, 252, 261, 1425
BspHI	TCATGA	1 cut(s)	1417
BspLI	GGNNCC	3 cut(s)	179, 279, 642
BspMI	ACCTGC	1 cut(s)	2007
BspPI	GGATC	3 cut(s)	272, 368, 389
BspQI	GCTCTTC	2 cut(s)	42, 321
BspTI	CTTAAG	1 cut(s)	1559
BspTNI	GGTCTC	1 cut(s)	1405
BsrBI	CCGCTC	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	1287, 1578
BsrGI	TGTACA	1 cut(s)	1912
BsrI	ACTGG	4 cut(s)	488, 1220, 1261, 1457
BssHII	GCGCGC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	5 cut(s)	273, 636, 1206, 1540, 1682
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	5 cut(s)	327, 804, 1008, 1364, 1973
Bst4CI	ACNGT	7 cut(s)	60, 396, 887, 1078, 1152, 1276, 1984
Bst6I	CTCTTC	3 cut(s)	25, 42, 321
BstAFI	CTTAAG	1 cut(s)	1559
BstAPI	GCANNNNNTGC	1 cut(s)	1803
BstAUI	TGTACA	1 cut(s)	1912
BstDEI	CTNAG	7 cut(s)	41, 141, 152, 219, 282, 1091, 2069
BstDSI	CCRYGG	5 cut(s)	181, 273, 1206, 1540, 1682
BstF5I	GGATG	2 cut(s)	289, 1799
BstFNI	CGCG	5 cut(s)	107, 198, 252, 261, 1425
BstHHI	GCGC	4 cut(s)	109, 198, 200, 261
BstMAI	GTCTC	2 cut(s)	1191, 1405
BstMCI	CGRYCG	1 cut(s)	165
BstNI	CCWGG	5 cut(s)	327, 804, 1008, 1364, 1973
BstNSI	RCATGY	3 cut(s)	1460, 1806, 1919
BstSCI	CCNGG	8 cut(s)	325, 738, 802, 1006, 1362, 1704, 1705, 1971
BstSFI	CTRYAG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	5 cut(s)	107, 198, 252, 261, 1425
BstV1I	GCAGC	6 cut(s)	1558, 1570, 1583, 1621, 1861, 1883
BstX2I	RGATCY	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	997
BstYI	RGATCY	1 cut(s)	373
BstZI	CGGCCG	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	384
BsuRI	GGCC	4 cut(s)	104, 164, 1655, 1908
BsuTUI	ATCGAT	1 cut(s)	384
BtgI	CCRYGG	5 cut(s)	181, 273, 1206, 1540, 1682
BtgZI	GCGATG	2 cut(s)	217, 1281
BtsCI	GGATG	2 cut(s)	289, 1799
BtsI	GCAGTG	2 cut(s)	619, 708
BtsIMutI	CAGTG	4 cut(s)	365, 619, 708, 892
BveI	ACCTGC	1 cut(s)	2007
CaiI	CAGNNNCTG	1 cut(s)	1877
CciI	TCATGA	1 cut(s)	1417
CfoI	GCGC	4 cut(s)	109, 198, 200, 261
Cfr13I	GGNCC	3 cut(s)	1372, 1403, 1906
Cfr9I	CCCGGG	1 cut(s)	1705
ClaI	ATCGAT	1 cut(s)	384
CseI	GACGC	1 cut(s)	241
CsiI	ACCWGGT	1 cut(s)	802
Csp6I	GTAC	6 cut(s)	397, 536, 877, 1511, 1913, 1985
CviQI	GTAC	6 cut(s)	397, 536, 877, 1511, 1913, 1985
DdeI	CTNAG	7 cut(s)	41, 141, 152, 219, 282, 1091, 2069
DraIII	CACNNNGTG	1 cut(s)	174
EaeI	YGGCCR	2 cut(s)	102, 162
EagI	CGGCCG	1 cut(s)	162
Eam1104I	CTCTTC	3 cut(s)	25, 42, 321
EarI	CTCTTC	3 cut(s)	25, 42, 321
EclXI	CGGCCG	1 cut(s)	162
Eco130I	CCWWGG	5 cut(s)	273, 636, 1206, 1540, 1682
Eco147I	AGGCCT	1 cut(s)	1655
Eco24I	GRGCYC	1 cut(s)	1392
Eco31I	GGTCTC	1 cut(s)	1405
Eco47I	GGWCC	2 cut(s)	1372, 1403
Eco52I	CGGCCG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	1705
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	5 cut(s)	325, 802, 1006, 1362, 1971
EcoT14I	CCWWGG	5 cut(s)	273, 636, 1206, 1540, 1682
EcoT22I	ATGCAT	2 cut(s)	1808, 1921
EcoT38I	GRGCYC	1 cut(s)	1392
ErhI	CCWWGG	5 cut(s)	273, 636, 1206, 1540, 1682
FalI	AAGNNNNNCTT	4 cut(s)	1281, 1313, 1825, 1857
FauI	CCCGC	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	1669
FokI	GGATG	2 cut(s)	276, 1806
FriOI	GRGCYC	1 cut(s)	1392
FspBI	CTAG	2 cut(s)	51, 722
GlaI	GCGC	4 cut(s)	108, 197, 199, 260
GsaI	CCCAGC	1 cut(s)	946
GsuI	CTGGAG	3 cut(s)	1029, 1721, 1734
HaeIII	GGCC	4 cut(s)	104, 164, 1655, 1908
HapII	CCGG	2 cut(s)	739, 1706
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	4 cut(s)	109, 198, 200, 261
Hin6I	GCGC	4 cut(s)	107, 196, 198, 259
HinP1I	GCGC	4 cut(s)	107, 196, 198, 259
HincII	GTYRAC	3 cut(s)	574, 1321, 2062
HindII	GTYRAC	3 cut(s)	574, 1321, 2062
HinfI	GANTC	6 cut(s)	286, 408, 419, 617, 902, 1337
HpaII	CCGG	2 cut(s)	739, 1706
HphI	GGTGA	5 cut(s)	127, 1157, 1537, 1938, 2051
Hpy166II	GTNNAC	8 cut(s)	536, 574, 1148, 1321, 1351, 1670, 1913, 2062
Hpy188I	TCNGA	8 cut(s)	44, 144, 222, 227, 378, 407, 694, 1342
Hpy8I	GTNNAC	8 cut(s)	536, 574, 1148, 1321, 1351, 1670, 1913, 2062
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	106, 129, 451, 1283
HpyCH4III	ACNGT	7 cut(s)	60, 396, 887, 1078, 1152, 1276, 1984
HpyF3I	CTNAG	7 cut(s)	41, 141, 152, 219, 282, 1091, 2069
HspAI	GCGC	4 cut(s)	107, 196, 198, 259
Ksp22I	TGATCA	1 cut(s)	661
LguI	GCTCTTC	2 cut(s)	42, 321
LmnI	GCTCC	9 cut(s)	161, 177, 205, 241, 283, 301, 502, 718, 1740
Lsp1109I	GCAGC	6 cut(s)	1558, 1570, 1583, 1621, 1861, 1883
LweI	GCATC	2 cut(s)	583, 1784
MabI	ACCWGGT	1 cut(s)	802
MaeI	CTAG	2 cut(s)	51, 722
MaeIII	GTNAC	8 cut(s)	390, 437, 1051, 1078, 1231, 1426, 1720, 2039
MbiI	CCGCTC	1 cut(s)	140
MboII	GAAGA	8 cut(s)	12, 29, 55, 308, 473, 1207, 1289, 2021
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	58, 1392
MluI	ACGCGT	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	2 cut(s)	874, 1765
Mph1103I	ATGCAT	2 cut(s)	1808, 1921
MroXI	GAANNNNTTC	1 cut(s)	901
MseI	TTAA	2 cut(s)	759, 1560
MslI	CAYNNNNRTG	4 cut(s)	995, 1085, 1569, 2037
MspA1I	CMGCKG	2 cut(s)	566, 1874
MspCI	CTTAAG	1 cut(s)	1559
MspI	CCGG	2 cut(s)	739, 1706
MspR9I	CCNGG	8 cut(s)	327, 740, 804, 1008, 1364, 1706, 1707, 1973
MvaI	CCWGG	5 cut(s)	327, 804, 1008, 1364, 1973
MvnI	CGCG	5 cut(s)	107, 198, 252, 261, 1425
NciI	CCSGG	3 cut(s)	740, 1706, 1707
NcoI	CCATGG	4 cut(s)	273, 1206, 1540, 1682
NlaIV	GGNNCC	3 cut(s)	179, 279, 642
NmeAIII	GCCGAG	2 cut(s)	11, 140
NmuCI	GTSAC	4 cut(s)	437, 1078, 1426, 2039
NsiI	ATGCAT	2 cut(s)	1808, 1921
NspI	RCATGY	3 cut(s)	1460, 1806, 1919
PaeI	GCATGC	1 cut(s)	1460
PagI	TCATGA	1 cut(s)	1417
PauI	GCGCGC	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	1655
PciSI	GCTCTTC	2 cut(s)	42, 321
PdmI	GAANNNNTTC	1 cut(s)	901
PfeI	GAWTC	5 cut(s)	408, 419, 617, 902, 1337
PflFI	GACNNNGTC	1 cut(s)	1067
PflMI	CCANNNNNTGG	1 cut(s)	174
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	5 cut(s)	325, 802, 1006, 1362, 1971
PspFI	CCCAGC	1 cut(s)	942
PspGI	CCWGG	5 cut(s)	325, 802, 1006, 1362, 1971
PspN4I	GGNNCC	3 cut(s)	179, 279, 642
PspPI	GGNCC	3 cut(s)	1372, 1403, 1906
PsrI	GAACNNNNNNTAC	4 cut(s)	332, 364, 1653, 1685
PstNI	CAGNNNCTG	1 cut(s)	1877
PsuI	RGATCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	1067
PteI	GCGCGC	1 cut(s)	196
PvuII	CAGCTG	2 cut(s)	566, 1874
RsaI	GTAC	6 cut(s)	398, 537, 878, 1512, 1914, 1986
RsaNI	GTAC	6 cut(s)	397, 536, 877, 1511, 1913, 1985
RseI	CAYNNNNRTG	4 cut(s)	995, 1085, 1569, 2037
SapI	GCTCTTC	2 cut(s)	42, 321
SaqAI	TTAA	2 cut(s)	759, 1560
Sau96I	GGNCC	3 cut(s)	1372, 1403, 1906
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	8 cut(s)	327, 740, 804, 1008, 1364, 1706, 1707, 1973
SduI	GDGCHC	2 cut(s)	58, 1392
SexAI	ACCWGGT	1 cut(s)	802
SfaNI	GCATC	2 cut(s)	583, 1784
SfcI	CTRYAG	1 cut(s)	352
SinI	GGWCC	2 cut(s)	1372, 1403
SmaI	CCCGGG	1 cut(s)	1707
SmiMI	CAYNNNNRTG	4 cut(s)	995, 1085, 1569, 2037
SmlI	CTYRAG	1 cut(s)	1559
SmoI	CTYRAG	1 cut(s)	1559
SphI	GCATGC	1 cut(s)	1460
SseBI	AGGCCT	1 cut(s)	1655
SsiI	CCGC	6 cut(s)	105, 110, 138, 165, 261, 333
SspI	AATATT	1 cut(s)	1780
SspMI	CTAG	2 cut(s)	51, 722
StuI	AGGCCT	1 cut(s)	1655
StyD4I	CCNGG	8 cut(s)	325, 738, 802, 1006, 1362, 1704, 1705, 1971
StyI	CCWWGG	5 cut(s)	273, 636, 1206, 1540, 1682
TaaI	ACNGT	7 cut(s)	60, 396, 887, 1078, 1152, 1276, 1984
TaqI	TCGA	4 cut(s)	246, 384, 678, 2005
TatI	WGTACW	2 cut(s)	535, 1912
TauI	GCSGC	4 cut(s)	107, 112, 167, 336
TfiI	GAWTC	5 cut(s)	408, 419, 617, 902, 1337
Tru1I	TTAA	2 cut(s)	759, 1560
Tru9I	TTAA	2 cut(s)	759, 1560
TscAI	CASTG	4 cut(s)	372, 619, 708, 892
TseFI	GTSAC	4 cut(s)	437, 1078, 1426, 2039
TseI	GCWGC	6 cut(s)	1546, 1583, 1596, 1634, 1871, 1874
Tsp45I	GTSAC	4 cut(s)	437, 1078, 1426, 2039
TspDTI	ATGAA	9 cut(s)	179, 614, 809, 1284, 1457, 1524, 1779, 1845, 2021
TspGWI	ACGGA	1 cut(s)	658
TspMI	CCCGGG	1 cut(s)	1705
TspRI	CASTG	4 cut(s)	372, 619, 708, 892
Tth111I	GACNNNGTC	1 cut(s)	1067
Van91I	CCANNNNNTGG	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	1559
VpaK11BI	GGWCC	2 cut(s)	1372, 1403
XapI	RAATTY	5 cut(s)	474, 513, 725, 1115, 1813
XceI	RCATGY	3 cut(s)	1460, 1806, 1919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmaI	CCCGGG	1 cut(s)	1705
XmiI	GTMKAC	1 cut(s)	1669
XmnI	GAANNNNTTC	1 cut(s)	901
XspI	CTAG	2 cut(s)	51, 722
Zsp2I	ATGCAT	2 cut(s)	1808, 1921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.