Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009004

Physical Location & Seq

Genomic Coordinates Reverse (-)

84269170 .. 84269887

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G048460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTTCCTGCATCACCCACCCCACGAAACCCTCCCTTCGCTGACAGACCCAAGGATCGATAAGTTACCGTACTCTGTCAGAATCCTGCTTGAATGTGCTATTCGCAATTGTGATAACTTCCAAGAAAAGAAGGAAGATGTTGAGAAAATTCTTGCCTGGGAAAATACTGTTCCAAAGCAAGTTGAAATTCCTTTCAAGCCTGCTCGTGTACTCTTGCAGGACTTTACAGGAGTGGCAGACCTTGCTGTAATGCGTGATGCTATGAACAATCTTGGCAGTGATTCTAACAAGATCAATCCCTTGGTTCCTGTTGATCTTCTTGTTGATCACTCCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0003994 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0006082 GO:0006101 GO:0006102 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031090 GO:0031667 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048856 GO:0050896 GO:0071704 GO:0071944 GO:0072350 GO:0090351 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

112

Amino Acids

12.73

Weight (kDa)

5.23

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	48 - 112	1.5e-08	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05710
fragaria_vesca	FvH4_6g43190
malus_domestica	MD09G1108800.v1.1 MD17G1096700.v1.1
prunus_persica	Prupe.3G217300_v2.0.a1 Prupe.3G217300_v2.0.a1
pyrus_communis	pycom09g03120 pycom17g09260
rosa_chinensis	RchiOBHm_Chr2g0159291
rosa_laevigata	RLG00000021152
rosa_multiflora	Rmu_sc0004800.1_g000001 Rmu_sc0007806.1_g000010 Rmu_sc0010590.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090620
rosa_rugosa	Rorug02G0475700
rosa_samantha	Rh2AG542100 Rh2BG554700 Rh2CG524800 Rh2DG564400 Rh5AG522200
rosa_wichuraiana	Rw2G044840 Rw5G048460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	147, 186
AfaI	GTAC	2 cut(s)	71, 210
AgsI	TTSAA	3 cut(s)	92, 185, 196
AjnI	CCWGG	1 cut(s)	155
AlwI	GGATC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	147, 186
AsuHPI	GGTGA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	157
BclI	TGATCA	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	19, 247
Bsa29I	ATCGAT	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	50, 156, 300
BseBI	CCWGG	1 cut(s)	157
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	50, 156, 300
BshVI	ATCGAT	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	54, 291, 313, 325
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	50, 156, 300
BssMI	GATC	4 cut(s)	54, 291, 313, 325
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	2 cut(s)	50, 300
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	2 cut(s)	69, 169
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	201
BstKTI	GATC	4 cut(s)	57, 294, 316, 328
BstMBI	GATC	4 cut(s)	54, 291, 313, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	57
BsuTUI	ATCGAT	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	70, 209
CviJI	RGCY	1 cut(s)	199
CviKI_1	RGCY	1 cut(s)	199
CviQI	GTAC	2 cut(s)	70, 209
DpnI	GATC	4 cut(s)	56, 293, 315, 327
DpnII	GATC	4 cut(s)	54, 291, 313, 325
Eco130I	CCWWGG	2 cut(s)	50, 300
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	50, 300
ErhI	CCWWGG	2 cut(s)	50, 300
FaiI	YATR	1 cut(s)	263
FbaI	TGATCA	1 cut(s)	325
HinfI	GANTC	2 cut(s)	81, 281
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	45, 124
HpyCH4III	ACNGT	2 cut(s)	69, 169
HpyCH4V	TGCA	2 cut(s)	10, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	54, 291, 313, 325
LpnPI	CCDG	8 cut(s)	20, 98, 142, 169, 203, 213, 213, 321
LweI	GCATC	2 cut(s)	19, 247
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	4 cut(s)	56, 293, 315, 327
MboI	GATC	4 cut(s)	54, 291, 313, 325
MboII	GAAGA	2 cut(s)	146, 308
MfeI	CAATTG	1 cut(s)	106
MluCI	AATT	3 cut(s)	106, 147, 186
MnlI	CCTC	1 cut(s)	41
MseI	TTAA	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	4 cut(s)	54, 291, 313, 325
NlaIV	GGNNCC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	81, 281
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	306
RsaI	GTAC	2 cut(s)	71, 210
RsaNI	GTAC	2 cut(s)	70, 209
SaqAI	TTAA	1 cut(s)	337
Sau3AI	GATC	4 cut(s)	54, 291, 313, 325
ScrFI	CCNGG	1 cut(s)	157
SetI	ASST	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	19, 247
Sse9I	AATT	3 cut(s)	106, 147, 186
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	50, 300
TaaI	ACNGT	2 cut(s)	69, 169
TaqI	TCGA	1 cut(s)	57
TasI	AATT	3 cut(s)	106, 147, 186
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	81, 281
Tru1I	TTAA	1 cut(s)	337
Tru9I	TTAA	1 cut(s)	337
TscAI	CASTG	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	283
XapI	RAATTY	2 cut(s)	147, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.