Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007806.1

Orthogroup ID

OG0009004

Physical Location & Seq

Genomic Coordinates Reverse (-)

35360 .. 36745

Gene Structure 1386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007806.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggacttcaacgcgagaggcggaggaagcagcagtggtggtggccgcagtgatgataagctaccgtactctatcagaatcctgcttgaatgtgctattcgcaattgtgataacttccaagtaaagaaggaagatgttgagaaaattctcgcctgggaaaatactgttccaaagcaagctgaaattcctttcaagcctgctcgtgtactcttgcaggacttcacaggagtggcagaccttgctgtaatgcgtgatgctatgaacaatcttggcagtgattctaacaagatcaatcccttggtaagtggagttcttattatttacgttcacaattcatggtactggagttacttgtctgtggtttgttatcactttgatgttgcaagatcagaaaatgcagtgcaggcaaatatggagctagaattccagagaaaccgggagagattagcttttcttaaatgggggtctactgctttccaaaatatgcttgttgttccacctggttctgcattgttcatcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0003994 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0006082 GO:0006101 GO:0006102 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031090 GO:0031667 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048856 GO:0050896 GO:0071704 GO:0071944 GO:0072350 GO:0090351 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

174

Amino Acids

19.59

Weight (kDa)

6.73

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05710
fragaria_vesca	FvH4_6g43190
malus_domestica	MD09G1108800.v1.1 MD17G1096700.v1.1
prunus_persica	Prupe.3G217300_v2.0.a1 Prupe.3G217300_v2.0.a1
pyrus_communis	pycom09g03120 pycom17g09260
rosa_chinensis	RchiOBHm_Chr2g0159291
rosa_laevigata	RLG00000021152
rosa_multiflora	Rmu_sc0004800.1_g000001 Rmu_sc0007806.1_g000010 Rmu_sc0010590.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090620
rosa_rugosa	Rorug02G0475700
rosa_samantha	Rh2AG542100 Rh2BG554700 Rh2CG524800 Rh2DG564400 Rh5AG522200
rosa_wichuraiana	Rw2G044840 Rw5G048460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	467
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	21, 46
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	3 cut(s)	144, 183, 422
AfaI	GTAC	3 cut(s)	68, 207, 341
AgsI	TTSAA	3 cut(s)	10, 89, 193
AjnI	CCWGG	2 cut(s)	152, 499
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	4 cut(s)	61, 179, 418, 449
AluI	AGCT	4 cut(s)	61, 179, 418, 449
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	3 cut(s)	144, 183, 422
AsuC2I	CCSGG	1 cut(s)	437
BaeI	ACNNNNGTAYC	2 cut(s)	331, 364
BauI	CACGAG	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	42
BciT130I	CCWGG	2 cut(s)	154, 501
BcnI	CCSGG	1 cut(s)	437
BfaI	CTAG	1 cut(s)	419
BisI	GCNGC	2 cut(s)	31, 46
BlsI	GCNGC	2 cut(s)	32, 47
Bme1390I	CCNGG	3 cut(s)	154, 437, 501
BmrFI	CCNGG	3 cut(s)	154, 437, 501
BmsI	GCATC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	153, 297
Bse1I	ACTGG	1 cut(s)	347
BseBI	CCWGG	2 cut(s)	154, 501
BseDI	CCNNGG	2 cut(s)	153, 297
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	436
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	288, 386
BspACI	CCGC	2 cut(s)	21, 46
BspANI	GGCC	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	153, 297
BssMI	GATC	2 cut(s)	288, 386
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	154, 501
Bst4CI	ACNGT	2 cut(s)	66, 166
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	177, 198, 405
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	291, 389
BstMBI	GATC	2 cut(s)	288, 386
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 239, 404
BstNI	CCWGG	2 cut(s)	154, 501
BstSCI	CCNGG	3 cut(s)	152, 435, 499
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	45
BtsI	GCAGTG	4 cut(s)	40, 55, 280, 405
BtsIMutI	CAGTG	4 cut(s)	40, 55, 280, 405
Cac8I	GCNNGC	3 cut(s)	177, 198, 405
CsiI	ACCWGGT	1 cut(s)	499
Csp6I	GTAC	3 cut(s)	67, 206, 340
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	6 cut(s)	45, 61, 179, 196, 418, 449
CviKI_1	RGCY	6 cut(s)	45, 61, 179, 196, 418, 449
CviQI	GTAC	3 cut(s)	67, 206, 340
DpnI	GATC	2 cut(s)	290, 388
DpnII	GATC	2 cut(s)	288, 386
EaeI	YGGCCR	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	152, 499
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	1 cut(s)	339
FaiI	YATR	4 cut(s)	260, 337, 413, 485
FatI	CATG	1 cut(s)	335
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	2 cut(s)	31, 46
Fsp4HI	GCNGC	2 cut(s)	31, 46
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	2 cut(s)	31, 46
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	436
Hin1II	CATG	1 cut(s)	339
HinfI	GANTC	2 cut(s)	78, 278
HpaII	CCGG	1 cut(s)	436
Hpy166II	GTNNAC	3 cut(s)	206, 328, 468
Hpy188I	TCNGA	2 cut(s)	77, 391
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	3 cut(s)	206, 328, 468
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	66, 166
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	5 cut(s)	214, 383, 398, 403, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 239, 404
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	288, 386
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	244
MabI	ACCWGGT	1 cut(s)	499
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	2 cut(s)	290, 388
MboI	GATC	2 cut(s)	288, 386
MboII	GAAGA	1 cut(s)	143
MfeI	CAATTG	1 cut(s)	103
MluCI	AATT	5 cut(s)	103, 144, 183, 331, 422
MnlI	CCTC	2 cut(s)	11, 17
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	2 cut(s)	227, 375
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	3 cut(s)	154, 437, 501
MunI	CAATTG	1 cut(s)	103
MvaI	CCWGG	2 cut(s)	154, 501
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	27, 239, 404
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	2 cut(s)	288, 386
NlaIII	CATG	1 cut(s)	339
OliI	CACNNNNGTG	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	78, 278
PkrI	GCNGC	2 cut(s)	32, 47
Psp6I	CCWGG	2 cut(s)	152, 499
PspGI	CCWGG	2 cut(s)	152, 499
PsrI	GAACNNNNNNTAC	2 cut(s)	294, 326
RsaI	GTAC	3 cut(s)	68, 207, 341
RsaNI	GTAC	3 cut(s)	67, 206, 340
RseI	CAYNNNNRTG	2 cut(s)	227, 375
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	2 cut(s)	31, 46
Sau3AI	GATC	2 cut(s)	288, 386
ScrFI	CCNGG	3 cut(s)	154, 437, 501
SetI	ASST	8 cut(s)	63, 181, 240, 327, 420, 451, 502, 524
SexAI	ACCWGGT	1 cut(s)	499
SfaNI	GCATC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	227, 375
Sse9I	AATT	5 cut(s)	103, 144, 183, 331, 422
SsiI	CCGC	2 cut(s)	21, 46
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	3 cut(s)	152, 435, 499
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	66, 166
TaiI	ACGT	1 cut(s)	327
TasI	AATT	5 cut(s)	103, 144, 183, 331, 422
TatI	WGTACW	1 cut(s)	205
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	78, 278
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	4 cut(s)	40, 55, 280, 405
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	3 cut(s)	275, 324, 505
TspRI	CASTG	4 cut(s)	40, 55, 280, 405
XapI	RAATTY	3 cut(s)	144, 183, 422
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.