Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009004

Physical Location & Seq

Genomic Coordinates Forward (+)

77012273 .. 77019947

Gene Structure 7675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG542100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGTATATAGCCACAGCCTCTTCCTCTGCCTCGGCTCTTCTCAGAGCTTCTAGGGCACGGTTCTTCTCCTCCTCCACTTCCACCTTGTCCAGAACCTTCTTGGCCGCGCCGCCCAAGCCTTCGTCGCATAGCTTCACCGCTCAGAGGCTTCTCAGCTCCTCGGCCGCCACTCGGTGGAGCCACGGCGTTCATTGGCGCGCTCCCTACACGCTTCGCTCTCAGATCAGAGCCATCGCTCCCGTCCTCGAACGCGTCCAGCGCGGGATCGCTACCATGGCTCCTGAGAGTCATCCATTCAAGGAGCATTTGACAGCTCTTCCCAAGCCAGGAGGCGGCGAGTATGGGAAGTTCTATAGCCTTACTTCACTGAAAGATCCGAGGATCGATAAGTTACCGTACTCTATCAGAATCCTGCTTGAATCTGCTATTCGTAATTGTGACAACTTCCAAGTAAAGAAGGAAGATGTTGAGAAAATTCTTGACTGGGAAAATACTGCTCCAAAGCAAGTTGAAATTCCTTTCAAGCCTGCTCGTGTACTCTTGCAGGACTTTACAGGAGTGCCAGCTGTGGTTGACCTTGCTGTAATGCGTGATGCTATGAACAATCTTGGCAGTGATTCTAACAAGATCAATCCCTTGGTTCCTGTTGATCTTGTTGTTGATCACTCCGTTCAAGTCGATGTTGCAAGATCAGAAAATGCAGTGCAGGCAAATATGGAGCTAGAATTCCAGAGAAACCGGGAGAGATTTGCTTTTCTTAAATGGGGTTCTACTGCTTTCCAAAATATGCTTGTTGTTCCACCTGGTTCTGGCATTGTTCATCAGGTCAATCTTGAATATCTTGGACGGGTTGTTTTCAACACTAATGGCTTGCTGTACCCCGACAGTGTGGTTGGAACTGATTCCCATACAACCATGATTGATGGTTTGGGAGTAGCTGGCTGGGGAGTTGGGGGTATTGAAGCAGAAGCTACTATGCTTGGTCAGCCCATGAGCATGGTGTTGCCTGGAGTTGTTGGGTTCAAGTTATCTGGAAAGTTGAACAATGGTGTTACTGCTACCGACTTGGTCTTGACTGTCACACAAATGCTGAGGAAGCATGGAGTTGTGGGAAAATTTGTTGAGTTTTATGGGGGTGGTATGGGTGAACTGTCGTTAGCCGACAGGGCTACTATTGCCAATATGTCTCCTGAATATGGTGCAACCATGGGGTTCTTCCCAGTAGATCATGTTACTTTACAATATCTCAAATTGACTGGTAGAAGCGATGAAACTGTGGCAATGATTGAAGGTTATCTTCGGGCAAATAAATTGTTTGTTGACTATAATGAGCCTGAATCAGAAAGAGTTTACTCATCTTACCTGGAATTGGACCTTTCACAAGTTGAGCCCTGTATTTCAGGACCAAAGAGACCTCATGATCGCGTGACCTTGAAAGATATGAAAGCTGACTGGCATGCCTGTCTTGATAACAAGGTTGGGTTCAAGGGATTTGCTATACCAAAAGAGGTACAAGACAAAGAGGTGAAGTTTTCATTCCATGGGCAGCCAGCAGAGCTTAAGCATGGTAGTGTTGTCATTGCTGCAATTACAAGCTGCACCAATACATCAAACCCAAGTGTCATGCTTGGGGCTGCTCTTGTTGCAAAAAAGGCCTGCGAACTTGGTCTACGGGTCAAGCCATGGGTAAAAACAAGTCTTGCCCCGGGTTCTGGAGTTGTTACAAAATATCTGCTCCAGAGTGGGTTGCAAAAGTATCTAAATGAACAGGGTTTCAATATTGTTGGATATGGATGCACGACATGCATTGGAAATTCAGGGGATTTAGATGAAAGTGTTGCTTCTGTCATAGCCGACAATGACATAGTAGCAGCTGCTGTGCTTTCTGGAAACAGGAACTTTGAGGGCCGTGTACATGCATTGACAAGGGCTAATTACCTTGCCTCACCTCCTTTAGTGGTTGCTTATGCCCTGGCTGGCACGGTACTCCCTTTTTACCTGCTTCGAGTGCAATTTACTTATTTTGTTCTTCATATTGGTGACTTCCCATATACAATAGTCAACTACCTTAGTTATACCCATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0003994 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0006082 GO:0006101 GO:0006102 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031090 GO:0031667 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048856 GO:0050896 GO:0071704 GO:0071944 GO:0072350 GO:0090351 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

695

Amino Acids

75.9

Weight (kDa)

8.44

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	157 - 660	1.7e-168	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05710
fragaria_vesca	FvH4_6g43190
malus_domestica	MD09G1108800.v1.1 MD17G1096700.v1.1
prunus_persica	Prupe.3G217300_v2.0.a1 Prupe.3G217300_v2.0.a1
pyrus_communis	pycom09g03120 pycom17g09260
rosa_chinensis	RchiOBHm_Chr2g0159291
rosa_laevigata	RLG00000021152
rosa_multiflora	Rmu_sc0004800.1_g000001 Rmu_sc0007806.1_g000010 Rmu_sc0010590.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090620
rosa_rugosa	Rorug02G0475700
rosa_samantha	Rh2AG542100 Rh2BG554700 Rh2CG524800 Rh2DG564400 Rh5AG522200
rosa_wichuraiana	Rw2G044840 Rw5G048460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2007
AccB7I	CCANNNNNTGG	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	1669
AccII	CGCG	5 cut(s)	107, 198, 252, 261, 1425
AciI	CCGC	6 cut(s)	105, 110, 138, 165, 261, 333
AclWI	GGATC	3 cut(s)	272, 368, 389
AcoI	YGGCCR	2 cut(s)	102, 162
AcsI	RAATTY	5 cut(s)	474, 513, 725, 1115, 1813
AdeI	CACNNNGTG	1 cut(s)	174
AfaI	GTAC	6 cut(s)	398, 537, 878, 1512, 1914, 1986
AfiI	CCNNNNNNNGG	9 cut(s)	144, 171, 174, 326, 332, 809, 1196, 1369, 1712
AflII	CTTAAG	1 cut(s)	1559
AflIII	ACRYGT	1 cut(s)	250
AjnI	CCWGG	5 cut(s)	325, 802, 1006, 1362, 1971
Alw26I	GTCTC	2 cut(s)	1191, 1405
AlwI	GGATC	3 cut(s)	272, 368, 389
AlwNI	CAGNNNCTG	1 cut(s)	1877
Ama87I	CYCGRG	1 cut(s)	1705
AoxI	GGCC	4 cut(s)	102, 162, 1653, 1906
ApeKI	GCWGC	6 cut(s)	1546, 1583, 1596, 1634, 1871, 1874
ApoI	RAATTY	5 cut(s)	474, 513, 725, 1115, 1813
Asp700I	GAANNNNTTC	1 cut(s)	901
AspLEI	GCGC	4 cut(s)	109, 198, 200, 261
AspS9I	GGNCC	3 cut(s)	1372, 1403, 1906
AsuC2I	CCSGG	3 cut(s)	740, 1706, 1707
AsuHPI	GGTGA	5 cut(s)	127, 1157, 1537, 1938, 2051
AvaI	CYCGRG	1 cut(s)	1705
AvaII	GGWCC	2 cut(s)	1372, 1403
BaeGI	GKGCMC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	1392
BauI	CACGAG	1 cut(s)	531
BbvCI	CCTCAGC	1 cut(s)	1091
BbvI	GCAGC	6 cut(s)	1558, 1570, 1583, 1621, 1861, 1883
BccI	CCATC	2 cut(s)	239, 917
BceAI	ACGGC	2 cut(s)	199, 1893
BciT130I	CCWGG	5 cut(s)	327, 804, 1008, 1364, 1973
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	3 cut(s)	740, 1706, 1707
BcoDI	GTCTC	2 cut(s)	1191, 1405
BfaI	CTAG	2 cut(s)	51, 722
BfmI	CTRYAG	1 cut(s)	352
BfrI	CTTAAG	1 cut(s)	1559
BfuAI	ACCTGC	1 cut(s)	2007
BglI	GCCNNNNNGGC	1 cut(s)	1166
Bme1390I	CCNGG	8 cut(s)	327, 740, 804, 1008, 1364, 1706, 1707, 1973
Bme18I	GGWCC	2 cut(s)	1372, 1403
BmeT110I	CYCGRG	1 cut(s)	1705
BmgT120I	GGNCC	3 cut(s)	1372, 1403, 1906
BmiI	GGNNCC	3 cut(s)	179, 279, 642
BmrFI	CCNGG	8 cut(s)	327, 740, 804, 1008, 1364, 1706, 1707, 1973
BmrI	ACTGGG	2 cut(s)	493, 1214
BmsI	GCATC	2 cut(s)	583, 1784
BmuI	ACTGGG	2 cut(s)	493, 1214
BpmI	CTGGAG	3 cut(s)	1029, 1721, 1734
Bpu10I	CCTNAGC	1 cut(s)	1091
BpuMI	CCSGG	3 cut(s)	740, 1706, 1707
Bsa29I	ATCGAT	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	1405
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	9 cut(s)	144, 171, 174, 326, 332, 809, 1196, 1369, 1712
Bse1I	ACTGG	4 cut(s)	488, 1220, 1261, 1457
Bse3DI	GCAATG	2 cut(s)	1287, 1578
BseBI	CCWGG	5 cut(s)	327, 804, 1008, 1364, 1973
BseCI	ATCGAT	1 cut(s)	384
BseGI	GGATG	2 cut(s)	289, 1799
BseLI	CCNNNNNNNGG	9 cut(s)	144, 171, 174, 326, 332, 809, 1196, 1369, 1712
BseMI	GCAATG	2 cut(s)	1287, 1578
BseMII	CTCAG	6 cut(s)	55, 155, 166, 233, 273, 1082
BseNI	ACTGG	4 cut(s)	488, 1220, 1261, 1457
BsePI	GCGCGC	1 cut(s)	196
BseRI	GAGGAG	3 cut(s)	58, 61, 148
BseSI	GKGCMC	1 cut(s)	58
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	6 cut(s)	1558, 1570, 1583, 1621, 1861, 1883
BseYI	CCCAGC	1 cut(s)	942
BsgI	GTGCAG	2 cut(s)	725, 1582
Bsh1236I	CGCG	5 cut(s)	107, 198, 252, 261, 1425
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	4 cut(s)	104, 164, 1655, 1908
BshVI	ATCGAT	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	1705
BsiSI	CCGG	2 cut(s)	739, 1706
BslI	CCNNNNNNNGG	9 cut(s)	144, 171, 174, 326, 332, 809, 1196, 1369, 1712
BsmAI	GTCTC	2 cut(s)	1191, 1405
BsnI	GGCC	4 cut(s)	104, 164, 1655, 1908
Bso31I	GGTCTC	1 cut(s)	1405
BsoBI	CYCGRG	1 cut(s)	1705
Bsp1286I	GDGCHC	2 cut(s)	58, 1392
Bsp1407I	TGTACA	1 cut(s)	1912
Bsp19I	CCATGG	4 cut(s)	273, 1206, 1540, 1682
BspACI	CCGC	6 cut(s)	105, 110, 138, 165, 261, 333
BspANI	GGCC	4 cut(s)	104, 164, 1655, 1908
BspCNI	CTCAG	6 cut(s)	54, 154, 165, 232, 274, 1083
BspDI	ATCGAT	1 cut(s)	384
BspFNI	CGCG	5 cut(s)	107, 198, 252, 261, 1425
BspHI	TCATGA	1 cut(s)	1417
BspLI	GGNNCC	3 cut(s)	179, 279, 642
BspMI	ACCTGC	1 cut(s)	2007
BspPI	GGATC	3 cut(s)	272, 368, 389
BspQI	GCTCTTC	2 cut(s)	42, 321
BspTI	CTTAAG	1 cut(s)	1559
BspTNI	GGTCTC	1 cut(s)	1405
BsrBI	CCGCTC	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	1287, 1578
BsrGI	TGTACA	1 cut(s)	1912
BsrI	ACTGG	4 cut(s)	488, 1220, 1261, 1457
BssHII	GCGCGC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	5 cut(s)	273, 636, 1206, 1540, 1682
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	5 cut(s)	327, 804, 1008, 1364, 1973
Bst4CI	ACNGT	7 cut(s)	60, 396, 887, 1078, 1152, 1276, 1984
Bst6I	CTCTTC	3 cut(s)	25, 42, 321
BstAFI	CTTAAG	1 cut(s)	1559
BstAPI	GCANNNNNTGC	1 cut(s)	1803
BstAUI	TGTACA	1 cut(s)	1912
BstDEI	CTNAG	7 cut(s)	41, 141, 152, 219, 282, 1091, 2069
BstDSI	CCRYGG	5 cut(s)	181, 273, 1206, 1540, 1682
BstF5I	GGATG	2 cut(s)	289, 1799
BstFNI	CGCG	5 cut(s)	107, 198, 252, 261, 1425
BstHHI	GCGC	4 cut(s)	109, 198, 200, 261
BstMAI	GTCTC	2 cut(s)	1191, 1405
BstMCI	CGRYCG	1 cut(s)	165
BstNI	CCWGG	5 cut(s)	327, 804, 1008, 1364, 1973
BstNSI	RCATGY	3 cut(s)	1460, 1806, 1919
BstSCI	CCNGG	8 cut(s)	325, 738, 802, 1006, 1362, 1704, 1705, 1971
BstSFI	CTRYAG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	5 cut(s)	107, 198, 252, 261, 1425
BstV1I	GCAGC	6 cut(s)	1558, 1570, 1583, 1621, 1861, 1883
BstX2I	RGATCY	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	997
BstYI	RGATCY	1 cut(s)	373
BstZI	CGGCCG	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	384
BsuRI	GGCC	4 cut(s)	104, 164, 1655, 1908
BsuTUI	ATCGAT	1 cut(s)	384
BtgI	CCRYGG	5 cut(s)	181, 273, 1206, 1540, 1682
BtgZI	GCGATG	2 cut(s)	217, 1281
BtsCI	GGATG	2 cut(s)	289, 1799
BtsI	GCAGTG	2 cut(s)	619, 708
BtsIMutI	CAGTG	4 cut(s)	365, 619, 708, 892
BveI	ACCTGC	1 cut(s)	2007
CaiI	CAGNNNCTG	1 cut(s)	1877
CciI	TCATGA	1 cut(s)	1417
CfoI	GCGC	4 cut(s)	109, 198, 200, 261
Cfr13I	GGNCC	3 cut(s)	1372, 1403, 1906
Cfr9I	CCCGGG	1 cut(s)	1705
ClaI	ATCGAT	1 cut(s)	384
CseI	GACGC	1 cut(s)	241
CsiI	ACCWGGT	1 cut(s)	802
Csp6I	GTAC	6 cut(s)	397, 536, 877, 1511, 1913, 1985
CviQI	GTAC	6 cut(s)	397, 536, 877, 1511, 1913, 1985
DdeI	CTNAG	7 cut(s)	41, 141, 152, 219, 282, 1091, 2069
DraIII	CACNNNGTG	1 cut(s)	174
EaeI	YGGCCR	2 cut(s)	102, 162
EagI	CGGCCG	1 cut(s)	162
Eam1104I	CTCTTC	3 cut(s)	25, 42, 321
EarI	CTCTTC	3 cut(s)	25, 42, 321
EclXI	CGGCCG	1 cut(s)	162
Eco130I	CCWWGG	5 cut(s)	273, 636, 1206, 1540, 1682
Eco147I	AGGCCT	1 cut(s)	1655
Eco24I	GRGCYC	1 cut(s)	1392
Eco31I	GGTCTC	1 cut(s)	1405
Eco47I	GGWCC	2 cut(s)	1372, 1403
Eco52I	CGGCCG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	1705
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	5 cut(s)	325, 802, 1006, 1362, 1971
EcoT14I	CCWWGG	5 cut(s)	273, 636, 1206, 1540, 1682
EcoT22I	ATGCAT	2 cut(s)	1808, 1921
EcoT38I	GRGCYC	1 cut(s)	1392
ErhI	CCWWGG	5 cut(s)	273, 636, 1206, 1540, 1682
FalI	AAGNNNNNCTT	4 cut(s)	1281, 1313, 1825, 1857
FauI	CCCGC	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	1669
FokI	GGATG	2 cut(s)	276, 1806
FriOI	GRGCYC	1 cut(s)	1392
FspBI	CTAG	2 cut(s)	51, 722
GlaI	GCGC	4 cut(s)	108, 197, 199, 260
GsaI	CCCAGC	1 cut(s)	946
GsuI	CTGGAG	3 cut(s)	1029, 1721, 1734
HaeIII	GGCC	4 cut(s)	104, 164, 1655, 1908
HapII	CCGG	2 cut(s)	739, 1706
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	4 cut(s)	109, 198, 200, 261
Hin6I	GCGC	4 cut(s)	107, 196, 198, 259
HinP1I	GCGC	4 cut(s)	107, 196, 198, 259
HincII	GTYRAC	3 cut(s)	574, 1321, 2062
HindII	GTYRAC	3 cut(s)	574, 1321, 2062
HinfI	GANTC	6 cut(s)	286, 408, 419, 617, 902, 1337
HpaII	CCGG	2 cut(s)	739, 1706
HphI	GGTGA	5 cut(s)	127, 1157, 1537, 1938, 2051
Hpy166II	GTNNAC	8 cut(s)	536, 574, 1148, 1321, 1351, 1670, 1913, 2062
Hpy188I	TCNGA	8 cut(s)	44, 144, 222, 227, 378, 407, 694, 1342
Hpy8I	GTNNAC	8 cut(s)	536, 574, 1148, 1321, 1351, 1670, 1913, 2062
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	106, 129, 451, 1283
HpyCH4III	ACNGT	7 cut(s)	60, 396, 887, 1078, 1152, 1276, 1984
HpyF3I	CTNAG	7 cut(s)	41, 141, 152, 219, 282, 1091, 2069
HspAI	GCGC	4 cut(s)	107, 196, 198, 259
Ksp22I	TGATCA	1 cut(s)	661
LguI	GCTCTTC	2 cut(s)	42, 321
LmnI	GCTCC	9 cut(s)	161, 177, 205, 241, 283, 301, 502, 718, 1740
Lsp1109I	GCAGC	6 cut(s)	1558, 1570, 1583, 1621, 1861, 1883
LweI	GCATC	2 cut(s)	583, 1784
MabI	ACCWGGT	1 cut(s)	802
MaeI	CTAG	2 cut(s)	51, 722
MaeIII	GTNAC	8 cut(s)	390, 437, 1051, 1078, 1231, 1426, 1720, 2039
MbiI	CCGCTC	1 cut(s)	140
MboII	GAAGA	8 cut(s)	12, 29, 55, 308, 473, 1207, 1289, 2021
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	58, 1392
MluI	ACGCGT	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	2 cut(s)	874, 1765
Mph1103I	ATGCAT	2 cut(s)	1808, 1921
MroXI	GAANNNNTTC	1 cut(s)	901
MseI	TTAA	2 cut(s)	759, 1560
MslI	CAYNNNNRTG	4 cut(s)	995, 1085, 1569, 2037
MspA1I	CMGCKG	2 cut(s)	566, 1874
MspCI	CTTAAG	1 cut(s)	1559
MspI	CCGG	2 cut(s)	739, 1706
MspR9I	CCNGG	8 cut(s)	327, 740, 804, 1008, 1364, 1706, 1707, 1973
MvaI	CCWGG	5 cut(s)	327, 804, 1008, 1364, 1973
MvnI	CGCG	5 cut(s)	107, 198, 252, 261, 1425
NciI	CCSGG	3 cut(s)	740, 1706, 1707
NcoI	CCATGG	4 cut(s)	273, 1206, 1540, 1682
NlaIV	GGNNCC	3 cut(s)	179, 279, 642
NmeAIII	GCCGAG	2 cut(s)	11, 140
NmuCI	GTSAC	4 cut(s)	437, 1078, 1426, 2039
NsiI	ATGCAT	2 cut(s)	1808, 1921
NspI	RCATGY	3 cut(s)	1460, 1806, 1919
PaeI	GCATGC	1 cut(s)	1460
PagI	TCATGA	1 cut(s)	1417
PauI	GCGCGC	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	1655
PciSI	GCTCTTC	2 cut(s)	42, 321
PdmI	GAANNNNTTC	1 cut(s)	901
PfeI	GAWTC	5 cut(s)	408, 419, 617, 902, 1337
PflFI	GACNNNGTC	1 cut(s)	1067
PflMI	CCANNNNNTGG	1 cut(s)	174
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	5 cut(s)	325, 802, 1006, 1362, 1971
PspFI	CCCAGC	1 cut(s)	942
PspGI	CCWGG	5 cut(s)	325, 802, 1006, 1362, 1971
PspN4I	GGNNCC	3 cut(s)	179, 279, 642
PspPI	GGNCC	3 cut(s)	1372, 1403, 1906
PsrI	GAACNNNNNNTAC	4 cut(s)	332, 364, 1653, 1685
PstNI	CAGNNNCTG	1 cut(s)	1877
PsuI	RGATCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	1067
PteI	GCGCGC	1 cut(s)	196
PvuII	CAGCTG	2 cut(s)	566, 1874
RsaI	GTAC	6 cut(s)	398, 537, 878, 1512, 1914, 1986
RsaNI	GTAC	6 cut(s)	397, 536, 877, 1511, 1913, 1985
RseI	CAYNNNNRTG	4 cut(s)	995, 1085, 1569, 2037
SapI	GCTCTTC	2 cut(s)	42, 321
SaqAI	TTAA	2 cut(s)	759, 1560
Sau96I	GGNCC	3 cut(s)	1372, 1403, 1906
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	8 cut(s)	327, 740, 804, 1008, 1364, 1706, 1707, 1973
SduI	GDGCHC	2 cut(s)	58, 1392
SexAI	ACCWGGT	1 cut(s)	802
SfaNI	GCATC	2 cut(s)	583, 1784
SfcI	CTRYAG	1 cut(s)	352
SinI	GGWCC	2 cut(s)	1372, 1403
SmaI	CCCGGG	1 cut(s)	1707
SmiMI	CAYNNNNRTG	4 cut(s)	995, 1085, 1569, 2037
SmlI	CTYRAG	1 cut(s)	1559
SmoI	CTYRAG	1 cut(s)	1559
SphI	GCATGC	1 cut(s)	1460
SseBI	AGGCCT	1 cut(s)	1655
SsiI	CCGC	6 cut(s)	105, 110, 138, 165, 261, 333
SspI	AATATT	1 cut(s)	1780
SspMI	CTAG	2 cut(s)	51, 722
StuI	AGGCCT	1 cut(s)	1655
StyD4I	CCNGG	8 cut(s)	325, 738, 802, 1006, 1362, 1704, 1705, 1971
StyI	CCWWGG	5 cut(s)	273, 636, 1206, 1540, 1682
TaaI	ACNGT	7 cut(s)	60, 396, 887, 1078, 1152, 1276, 1984
TaqI	TCGA	4 cut(s)	246, 384, 678, 2005
TatI	WGTACW	2 cut(s)	535, 1912
TauI	GCSGC	4 cut(s)	107, 112, 167, 336
TfiI	GAWTC	5 cut(s)	408, 419, 617, 902, 1337
Tru1I	TTAA	2 cut(s)	759, 1560
Tru9I	TTAA	2 cut(s)	759, 1560
TscAI	CASTG	4 cut(s)	372, 619, 708, 892
TseFI	GTSAC	4 cut(s)	437, 1078, 1426, 2039
TseI	GCWGC	6 cut(s)	1546, 1583, 1596, 1634, 1871, 1874
Tsp45I	GTSAC	4 cut(s)	437, 1078, 1426, 2039
TspDTI	ATGAA	9 cut(s)	179, 614, 809, 1284, 1457, 1524, 1779, 1845, 2021
TspGWI	ACGGA	1 cut(s)	658
TspMI	CCCGGG	1 cut(s)	1705
TspRI	CASTG	4 cut(s)	372, 619, 708, 892
Tth111I	GACNNNGTC	1 cut(s)	1067
Van91I	CCANNNNNTGG	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	1559
VpaK11BI	GGWCC	2 cut(s)	1372, 1403
XapI	RAATTY	5 cut(s)	474, 513, 725, 1115, 1813
XceI	RCATGY	3 cut(s)	1460, 1806, 1919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmaI	CCCGGG	1 cut(s)	1705
XmiI	GTMKAC	1 cut(s)	1669
XmnI	GAANNNNTTC	1 cut(s)	901
XspI	CTAG	2 cut(s)	51, 722
Zsp2I	ATGCAT	2 cut(s)	1808, 1921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.