Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009004

Physical Location & Seq

Genomic Coordinates Reverse (-)

60683333 .. 60684250

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0475700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGATCGAGAATAAATCTCAGACCCAGATACCCAAACCCACATTGAAGAGAAAGCAAAGAAAAACCCACATGGGCAGTAATGCACTGCATGAATCCCACGCAGCAAGATCAAGCAGCAGCAGAAGAATCAAGGCAAGAAGAGACAGTCAGTGCATGAAGACTAGTACTACTACTTCTCAGAAAAACCCAAAAGATGTAAAGGCTCATGGTGGTGAGGAGGAAGCTGCTGATGATAGGGAGGAGGTAGAGAGGAAGATAGAGGCATTGCAGAGGATTGTGCCCGGAGGTGAGTCACTTGGTGTGGACAAGCTATTTGAAGAGACTGCTGGGTACATTATGACCTTGCAGGTTCAGCTCAAAGCCATGAAAGCCCTTGCAAGCTTTTTTGAGGGTTTGGAGAAGGAGAAGAAAAAGTTTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0003994 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0006082 GO:0006101 GO:0006102 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031090 GO:0031667 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048856 GO:0050896 GO:0071704 GO:0071944 GO:0072350 GO:0090351 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

142

Amino Acids

15.93

Weight (kDa)

9.57

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05710
fragaria_vesca	FvH4_6g43190
malus_domestica	MD09G1108800.v1.1 MD17G1096700.v1.1
prunus_persica	Prupe.3G217300_v2.0.a1 Prupe.3G217300_v2.0.a1
pyrus_communis	pycom09g03120 pycom17g09260
rosa_chinensis	RchiOBHm_Chr2g0159291
rosa_laevigata	RLG00000021152
rosa_multiflora	Rmu_sc0004800.1_g000001 Rmu_sc0007806.1_g000010 Rmu_sc0010590.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090620
rosa_rugosa	Rorug02G0475700
rosa_samantha	Rh2AG542100 Rh2BG554700 Rh2CG524800 Rh2DG564400 Rh5AG522200
rosa_wichuraiana	Rw2G044840 Rw5G048460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AdeI	CACNNNGTG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	169, 335
AgsI	TTSAA	2 cut(s)	49, 320
AhlI	ACTAGT	1 cut(s)	164
AluBI	AGCT	5 cut(s)	227, 313, 358, 384, 425
AluI	AGCT	5 cut(s)	227, 313, 358, 384, 425
Alw26I	GTCTC	2 cut(s)	138, 317
ApeKI	GCWGC	4 cut(s)	104, 117, 120, 227
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	227, 302
BaeGI	GKGCMC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	160, 192
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	116, 129, 132, 214
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	138, 317
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	4 cut(s)	105, 118, 121, 228
BlsI	GCNGC	4 cut(s)	106, 119, 122, 229
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	35, 194
BseRI	GAGGAG	2 cut(s)	233, 257
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	4 cut(s)	116, 129, 132, 214
BseYI	CCCAGC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	285
BsmAI	GTCTC	2 cut(s)	138, 317
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	6, 110
BspCNI	CTCAG	2 cut(s)	34, 193
BspMI	ACCTGC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	266
BssMI	GATC	2 cut(s)	6, 110
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	3 cut(s)	44, 136, 315
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	21, 180
BstKTI	GATC	2 cut(s)	9, 113
BstMAI	GTCTC	2 cut(s)	138, 317
BstMBI	GATC	2 cut(s)	6, 110
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 371
BstSCI	CCNGG	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	4 cut(s)	116, 129, 132, 214
BstV2I	GAAGAC	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	86, 158
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	168, 334
CviAII	CATG	5 cut(s)	73, 92, 157, 209, 367
CviJI	RGCY	8 cut(s)	206, 227, 313, 358, 365, 374, 384, 425
CviKI_1	RGCY	8 cut(s)	206, 227, 313, 358, 365, 374, 384, 425
CviQI	GTAC	2 cut(s)	168, 334
DdeI	CTNAG	2 cut(s)	21, 180
DpnI	GATC	2 cut(s)	8, 112
DpnII	GATC	2 cut(s)	6, 110
DraIII	CACNNNGTG	1 cut(s)	302
Eam1104I	CTCTTC	3 cut(s)	44, 136, 315
EarI	CTCTTC	3 cut(s)	44, 136, 315
FaeI	CATG	5 cut(s)	76, 95, 160, 212, 370
FaiI	YATR	6 cut(s)	74, 93, 158, 210, 341, 368
FatI	CATG	5 cut(s)	72, 91, 156, 208, 366
Fnu4HI	GCNGC	4 cut(s)	105, 118, 121, 228
Fsp4HI	GCNGC	4 cut(s)	105, 118, 121, 228
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	4 cut(s)	105, 118, 121, 228
GsaI	CCCAGC	1 cut(s)	333
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	5 cut(s)	76, 95, 160, 212, 370
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	3 cut(s)	95, 129, 293
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	227, 302
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	24, 183
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	6 cut(s)	86, 91, 156, 271, 349, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 371
HpyF3I	CTNAG	2 cut(s)	21, 180
Hsp92II	CATG	5 cut(s)	76, 95, 160, 212, 370
Kzo9I	GATC	2 cut(s)	6, 110
LmnI	GCTCC	1 cut(s)	422
LpnPI	CCDG	4 cut(s)	41, 298, 315, 335
Lsp1109I	GCAGC	4 cut(s)	116, 129, 132, 214
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	2 cut(s)	8, 112
MboI	GATC	2 cut(s)	6, 110
MboII	GAAGA	7 cut(s)	61, 138, 153, 172, 268, 332, 421
MhlI	GDGCHC	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	9 cut(s)	211, 214, 235, 238, 246, 256, 267, 281, 385
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	355, 371
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	2 cut(s)	6, 110
NlaIII	CATG	5 cut(s)	76, 95, 160, 212, 370
NmuCI	GTSAC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	95, 129
PkrI	GCNGC	4 cut(s)	106, 119, 122, 229
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	329
RsaI	GTAC	2 cut(s)	169, 335
RsaNI	GTAC	2 cut(s)	168, 334
RseI	CAYNNNNRTG	1 cut(s)	213
SatI	GCNGC	4 cut(s)	105, 118, 121, 228
Sau3AI	GATC	2 cut(s)	6, 110
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	9 cut(s)	229, 249, 292, 315, 347, 354, 360, 386, 427
SmiMI	CAYNNNNRTG	1 cut(s)	213
SpeI	ACTAGT	1 cut(s)	164
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	9
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	95, 129
TscAI	CASTG	2 cut(s)	93, 158
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	4 cut(s)	104, 117, 120, 227
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	3 cut(s)	108, 173, 383
TspRI	CASTG	2 cut(s)	93, 158
XspI	CTAG	1 cut(s)	165
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.