Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008977

Physical Location & Seq

Genomic Coordinates Reverse (-)

34349673 .. 34351273

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44592.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCAGGATGTGACTGATCTATTGAAAGATTCCAAGGGTAATGATAGGAAGGAAGTGAATATTGAAGAATTTAAATTAGCCCTCTCTCTAGTGGATTCACAGAGAAAGAGTCTGCCCGCAACCGCACAGGTTGCTGCTCAGCAGGGTACATATCTTTCTAATTGCTTTAACCGGAGAAAGCAGTGCGAAGCAAATCCTGAAGGTCCACGACGTTTTAAAGGTTCTGGACAACATAACTTTCTGCCATTCAGGTACAAGCATTTCGGTCAATTTGCTCCATTGGGAGGTGAGGAAGCAGCAGCAGAGCTGCCCGGGGACCGGGTTTCCATGGGCCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGCAAGCAAGTTAGCTGGCGTACTAGGGTCCTAGTGGTATCTGATTGGACCAGAGGATTTATTTTCGGGAGAGATTCAAGCCGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

153

Amino Acids

17.29

Weight (kDa)

9.55

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDH2_C	PF22366	87 - 148	1.4e-17	NDH2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28220 AT4G28220
fragaria_vesca	FvH4_6g44592 FvH4_6g44593 FvH4_6g44690
malus_domestica	MD09G1096300.v1.1
prunus_persica	Prupe.3G231400_v2.0.a1
pyrus_communis	pycom09g02080
rosa_chinensis	RchiOBHm_Chr2g0161881
rosa_laevigata	RLG00000021305
rosa_multiflora	Rmu_co8378237.1_g000001 Rmu_sc0008565.1_g000008 Rmu_sc0018381.1_g000008 Rmu_sc0028798.1_g000001
rosa_rugosa	Rorug02G0492800 Rorug02G0492900 Rorug02G0493000
rosa_samantha	Rh2AG558800 Rh2BG572200 Rh2CG542600 Rh2DG582100
rosa_wichuraiana	Rw2G046260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	117, 123
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	3 cut(s)	148, 254, 391
AfiI	CCNNNNNNNGG	2 cut(s)	284, 318
AgsI	TTSAA	3 cut(s)	25, 65, 447
AluBI	AGCT	2 cut(s)	307, 384
AluI	AGCT	2 cut(s)	307, 384
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	4 cut(s)	134, 296, 299, 307
ApoI	RAATTY	1 cut(s)	68
AspS9I	GGNCC	5 cut(s)	203, 316, 331, 397, 417
AsuC2I	CCSGG	3 cut(s)	312, 313, 320
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	4 cut(s)	203, 316, 397, 417
BbvI	GCAGC	4 cut(s)	121, 294, 308, 311
BceAI	ACGGC	1 cut(s)	435
BcnI	CCSGG	3 cut(s)	312, 313, 320
BfaI	CTAG	3 cut(s)	89, 393, 401
BisI	GCNGC	4 cut(s)	135, 297, 300, 308
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	4 cut(s)	136, 298, 301, 309
Bme1390I	CCNGG	3 cut(s)	312, 313, 320
Bme18I	GGWCC	4 cut(s)	203, 316, 397, 417
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	5 cut(s)	203, 316, 331, 397, 417
BmiI	GGNNCC	2 cut(s)	317, 398
BmrFI	CCNGG	3 cut(s)	312, 313, 320
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuMI	CCSGG	3 cut(s)	312, 313, 320
BsaJI	CCNNGG	4 cut(s)	33, 311, 312, 327
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 318
BseDI	CCNNGG	4 cut(s)	33, 311, 312, 327
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	284, 318
BseMII	CTCAG	1 cut(s)	152
BseXI	GCAGC	4 cut(s)	121, 294, 308, 311
BshFI	GGCC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	3 cut(s)	172, 312, 319
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	284, 318
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	16
Bsp1720I	GCTNAGC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	2 cut(s)	117, 123
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	317, 398
BssECI	CCNNGG	4 cut(s)	33, 311, 312, 327
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	2 cut(s)	33, 327
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	4 cut(s)	117, 370, 374, 386
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSCI	CCNGG	3 cut(s)	310, 311, 318
BstV1I	GCAGC	4 cut(s)	121, 294, 308, 311
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	4 cut(s)	117, 370, 374, 386
Cfr13I	GGNCC	5 cut(s)	203, 316, 331, 397, 417
Cfr9I	CCCGGG	1 cut(s)	311
Csp6I	GTAC	3 cut(s)	147, 253, 390
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	6 cut(s)	80, 307, 333, 349, 384, 450
CviKI_1	RGCY	6 cut(s)	80, 307, 333, 349, 384, 450
CviQI	GTAC	3 cut(s)	147, 253, 390
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DraI	TTTAAA	2 cut(s)	73, 217
Eco130I	CCWWGG	2 cut(s)	33, 327
Eco47I	GGWCC	4 cut(s)	203, 316, 397, 417
Eco57I	CTGAAG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	33, 327
ErhI	CCWWGG	2 cut(s)	33, 327
FaeI	CATG	1 cut(s)	331
FaiI	YATR	5 cut(s)	151, 234, 329, 364, 366
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	1 cut(s)	327
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	135, 297, 300, 308
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	135, 297, 300, 308
FspBI	CTAG	3 cut(s)	89, 393, 401
GluI	GCNGC	4 cut(s)	135, 297, 300, 308
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	3 cut(s)	172, 312, 319
Hin1II	CATG	1 cut(s)	331
HinfI	GANTC	4 cut(s)	29, 95, 109, 443
HpaII	CCGG	3 cut(s)	172, 312, 319
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	3 cut(s)	197, 225, 436
Hpy8I	GTNNAC	1 cut(s)	206
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	2 cut(s)	43, 194
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	4, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	4 cut(s)	121, 294, 308, 311
MaeI	CTAG	3 cut(s)	89, 393, 401
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	77
MluCI	AATT	4 cut(s)	68, 74, 160, 269
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	92, 278, 283, 416
MseI	TTAA	3 cut(s)	72, 168, 216
MspI	CCGG	3 cut(s)	172, 312, 319
MspR9I	CCNGG	3 cut(s)	312, 313, 320
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	3 cut(s)	312, 313, 320
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	2 cut(s)	317, 398
NmuCI	GTSAC	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	29, 95, 443
PkrI	GCNGC	4 cut(s)	136, 298, 301, 309
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	317, 398
PspPI	GGNCC	5 cut(s)	203, 316, 331, 397, 417
PspPPI	RGGWCCY	1 cut(s)	397
RsaI	GTAC	3 cut(s)	148, 254, 391
RsaNI	GTAC	3 cut(s)	147, 253, 390
SaqAI	TTAA	3 cut(s)	72, 168, 216
SatI	GCNGC	4 cut(s)	135, 297, 300, 308
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	5 cut(s)	203, 316, 331, 397, 417
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	312, 313, 320
SetI	ASST	8 cut(s)	132, 205, 214, 223, 254, 289, 309, 386
SinI	GGWCC	4 cut(s)	203, 316, 397, 417
SmaI	CCCGGG	1 cut(s)	313
SmiI	ATTTAAAT	1 cut(s)	73
Sse9I	AATT	4 cut(s)	68, 74, 160, 269
SsiI	CCGC	2 cut(s)	117, 123
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	3 cut(s)	89, 393, 401
StyD4I	CCNGG	3 cut(s)	310, 311, 318
StyI	CCWWGG	2 cut(s)	33, 327
SwaI	ATTTAAAT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	214
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	4 cut(s)	68, 74, 160, 269
TfiI	GAWTC	3 cut(s)	29, 95, 443
Tru1I	TTAA	3 cut(s)	72, 168, 216
Tru9I	TTAA	3 cut(s)	72, 168, 216
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	4 cut(s)	134, 296, 299, 307
Tsp45I	GTSAC	1 cut(s)	10
TspMI	CCCGGG	1 cut(s)	311
TspRI	CASTG	1 cut(s)	188
VpaK11BI	GGWCC	4 cut(s)	203, 316, 397, 417
XapI	RAATTY	1 cut(s)	68
XmaI	CCCGGG	1 cut(s)	311
XspI	CTAG	3 cut(s)	89, 393, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.