Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378237.1

Orthogroup ID

OG0008977

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1155

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378237.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

tattgtaggtttgatgaaagaattagtaattttgctgagaccaaatttcaaagagatggtattgatgttcaaacaggatgccgggttgtcagtgtttcagacaaggaaatcaaagtgaaagtgaaatcaaagggagaggtctgctctgttccacatggattggtggtgtggtctaccggcgttgggactcgtccagttgtgagagactttatggaacaaattggacaggctaatagacgtgttctagtaactgatgaatggttgcgtgtaaagggttgtgatgatgtgtatgccattggtgattgcgctacaattgatcaacgtaaaatcatggaagatatcgtggccatatttgcagctgcggacacagacaactctggtaccttaacggttgctgaattccaagatgtagttgacgacataatcattaggtatccccaagtggaacagtatttaaaaagcaagcatctgcaagatgtgacagatctattgaaagattctgaggggaatgataggaaggaagtgaatattgaagaatttaaattagccctctctctagtggattcacagaggaagagtctgcctgcaactgcacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

199

Amino Acids

22.36

Weight (kDa)

4.98

Isoelectric Point (pI)

23.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28220 AT4G28220
fragaria_vesca	FvH4_6g44592 FvH4_6g44593 FvH4_6g44690
malus_domestica	MD09G1096300.v1.1
prunus_persica	Prupe.3G231400_v2.0.a1
pyrus_communis	pycom09g02080
rosa_chinensis	RchiOBHm_Chr2g0161881
rosa_laevigata	RLG00000021305
rosa_multiflora	Rmu_co8378237.1_g000001 Rmu_sc0008565.1_g000008 Rmu_sc0018381.1_g000008 Rmu_sc0028798.1_g000001
rosa_rugosa	Rorug02G0492800 Rorug02G0492900 Rorug02G0493000
rosa_samantha	Rh2AG558800 Rh2BG572200 Rh2CG542600 Rh2DG582100
rosa_wichuraiana	Rw2G046260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	173
AciI	CCGC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	3 cut(s)	44, 398, 536
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	50, 71, 493, 533
AjiI	CACGTC	1 cut(s)	239
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	32, 198
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	356, 359
ApoI	RAATTY	3 cut(s)	44, 398, 536
Asp718I	GGTACC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	311
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BalI	TGGCCA	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	346, 368
BccI	CCATC	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	32, 198
BfaI	CTAG	2 cut(s)	245, 557
BfuI	GTATCC	1 cut(s)	444
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	2 cut(s)	357, 360
BlsI	GCNGC	2 cut(s)	358, 361
Bme1390I	CCNGG	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	68, 475
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpuMI	CCSGG	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	27, 492
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	346, 368
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	82, 177
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	2 cut(s)	32, 198
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	347
Bso31I	GGTCTC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	316, 484
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	28, 493
BspLI	GGNNCC	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	176
BssMI	GATC	2 cut(s)	316, 484
Bst4CI	ACNGT	2 cut(s)	391, 450
Bst6I	CTCTTC	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	464, 585
BstDEI	CTNAG	2 cut(s)	36, 501
BstF5I	GGATG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	2 cut(s)	319, 487
BstMAI	GTCTC	2 cut(s)	32, 198
BstMBI	GATC	2 cut(s)	316, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	346, 368
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	464, 585
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	381
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviAII	CATG	2 cut(s)	155, 331
CviJI	RGCY	4 cut(s)	230, 347, 359, 548
CviKI_1	RGCY	4 cut(s)	230, 347, 359, 548
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	2 cut(s)	36, 501
DpnI	GATC	2 cut(s)	318, 486
DpnII	GATC	2 cut(s)	316, 484
DraI	TTTAAA	2 cut(s)	456, 541
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco31I	GGTCTC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	340
FaeI	CATG	2 cut(s)	158, 334
FaiI	YATR	6 cut(s)	156, 212, 291, 332, 350, 422
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	2 cut(s)	154, 330
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	2 cut(s)	357, 360
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	357, 360
FspBI	CTAG	2 cut(s)	245, 557
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	2 cut(s)	357, 360
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	2 cut(s)	82, 177
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	158, 334
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	4 cut(s)	187, 497, 563, 577
HpaII	CCGG	2 cut(s)	82, 177
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	174, 415
Hpy188I	TCNGA	2 cut(s)	100, 502
Hpy8I	GTNNAC	2 cut(s)	174, 415
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	2 cut(s)	391, 450
HpyCH4IV	ACGT	2 cut(s)	238, 322
HpyCH4V	TGCA	4 cut(s)	356, 472, 587, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	36, 501
HpySE526I	ACGT	2 cut(s)	238, 322
Hsp92II	CATG	2 cut(s)	158, 334
HspAI	GCGC	1 cut(s)	306
KpnI	GGTACC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	316, 484
LpnPI	CCDG	6 cut(s)	60, 95, 190, 207, 212, 363
Lsp1109I	GCAGC	2 cut(s)	346, 368
LweI	GCATC	2 cut(s)	68, 475
MaeI	CTAG	2 cut(s)	245, 557
MaeII	ACGT	2 cut(s)	238, 322
MaeIII	GTNAC	2 cut(s)	247, 478
MalI	GATC	2 cut(s)	318, 486
MboI	GATC	2 cut(s)	316, 484
MboII	GAAGA	3 cut(s)	347, 545, 586
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	484
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	8 cut(s)	21, 28, 44, 219, 312, 398, 536, 542
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	2 cut(s)	181, 586
MnlI	CCTC	4 cut(s)	130, 496, 560, 564
Mox20I	TGGCCA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	3 cut(s)	386, 455, 540
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	2 cut(s)	82, 177
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	2 cut(s)	316, 484
NlaIII	CATG	2 cut(s)	158, 334
NlaIV	GGNNCC	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	497, 563
PkrI	GCNGC	2 cut(s)	358, 361
PleI	GAGTC	2 cut(s)	181, 585
PpsI	GAGTC	2 cut(s)	181, 585
PspN4I	GGNNCC	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	386, 455, 540
SatI	GCNGC	2 cut(s)	357, 360
Sau3AI	GATC	2 cut(s)	316, 484
SchI	GAGTC	2 cut(s)	181, 586
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	7 cut(s)	11, 141, 241, 325, 361, 386, 434
SfaNI	GCATC	2 cut(s)	68, 475
SmiI	ATTTAAAT	1 cut(s)	541
Sse9I	AATT	8 cut(s)	21, 28, 44, 219, 312, 398, 536, 542
SsiI	CCGC	1 cut(s)	362
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	2 cut(s)	245, 557
StyD4I	CCNGG	1 cut(s)	81
SwaI	ATTTAAAT	1 cut(s)	541
TaaI	ACNGT	2 cut(s)	391, 450
TaiI	ACGT	2 cut(s)	241, 325
TasI	AATT	8 cut(s)	21, 28, 44, 219, 312, 398, 536, 542
TfiI	GAWTC	2 cut(s)	497, 563
Tru1I	TTAA	3 cut(s)	386, 455, 540
Tru9I	TTAA	3 cut(s)	386, 455, 540
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	356, 359
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	30, 270
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	3 cut(s)	44, 398, 536
XmiI	GTMKAC	1 cut(s)	173
XspI	CTAG	2 cut(s)	245, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.