Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008977

Physical Location & Seq

Genomic Coordinates Reverse (-)

78989722 .. 78991786

Gene Structure 2065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG558800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGACTTATAAAATATTATTTTCTTATTGTAGGTTTGATGAAAGAATTAGTAATTTTGCTGAGACCAAATTTCAAAGAGATGGTATTGATGTTCAAACAGGATGCCGGGTTGTCAGTGTTTCAGACAAGGAAATCAAAGTGAAAGTGAAATCAAAGGGAGAGGTCTGCTCTGTTCCACATGGATTGGTGGTGTGGTCTACCGGCGTTGGGACTCGTCCAGTTGTGAGAGACTTTATGGAACAAATTGGACAGGCTAATAGACGTGTTCTAGTAACTGATGAATGGTTGCGTGTAAAGGGTTGTGATGATGTGTATGCCATTGGTGATTGCGCTACAATTGATCAACGTAAAATCATGGAAGATATCGTGGCCATATTTGCAGCTGCAGACACAGACAACTCTGGTACCTTAACAGTTACTGAATTCCGAGATGTAGTTGACGACATAATCATTAGGTATCCCCAAGTGGAACAGTATTTAAAAAGCAAGCATCTGCAAGATGTGACAGATCTATTGAAAGATTCCGAGGGGAATGATAGGAAGGAAGTGAATATTGAAGAATTTAAATTAGCCCTCTCTCTAGTGGATTCACAGAGGAAGAGTCTGCCTGCAACTGCACAGGTTGCTGCTCAGCAGGGTACATATCTTTCTAATTGCTTTAACCGTAGAGAGCAGTGTGAAGCAATTCCTGAAGGTCCTCGACGTTTTAGAGGTTCTGGACAACATCACTTTCTTCCCTTCAGGTACAAGCATTTCGGGCAATTTGCTCCATTGGGGGGTGAGGAAGCAGCAGCAGAGCTGCCTGGGGACTGGGTTTCCACGGGTCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGTACTAGGGTCCTAGTGGTATCTGATTGGACCAGAAGATTTATTTTTGGGAGAGATTCAAGCCGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

316

Amino Acids

36.01

Weight (kDa)

7.0

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	11 - 124	1.1e-16	Pyridine nucleotide-disulphide oxidoreductase
NDH2_C	PF22366	251 - 312	8.9e-17	NDH2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28220 AT4G28220
fragaria_vesca	FvH4_6g44592 FvH4_6g44593 FvH4_6g44690
malus_domestica	MD09G1096300.v1.1
prunus_persica	Prupe.3G231400_v2.0.a1
pyrus_communis	pycom09g02080
rosa_chinensis	RchiOBHm_Chr2g0161881
rosa_laevigata	RLG00000021305
rosa_multiflora	Rmu_co8378237.1_g000001 Rmu_sc0008565.1_g000008 Rmu_sc0018381.1_g000008 Rmu_sc0028798.1_g000001
rosa_rugosa	Rorug02G0492800 Rorug02G0492900 Rorug02G0493000
rosa_samantha	Rh2AG558800 Rh2BG572200 Rh2CG542600 Rh2DG582100
rosa_wichuraiana	Rw2G046260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
Acc65I	GGTACC	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	68, 422, 560
AcuI	CTGAAG	2 cut(s)	711, 724
AfaI	GTAC	4 cut(s)	406, 640, 746, 883
AfiI	CCNNNNNNNGG	2 cut(s)	207, 776
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	5 cut(s)	74, 95, 517, 557, 939
AjiI	CACGTC	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	802
AluBI	AGCT	3 cut(s)	383, 799, 876
AluI	AGCT	3 cut(s)	383, 799, 876
Alw26I	GTCTC	2 cut(s)	56, 222
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	6 cut(s)	380, 383, 626, 788, 791, 799
ApoI	RAATTY	3 cut(s)	68, 422, 560
Asp700I	GAANNNNTTC	1 cut(s)	684
Asp718I	GGTACC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	695, 889, 909
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	335, 791
AvaII	GGWCC	3 cut(s)	695, 889, 909
BaeI	ACNNNNGTAYC	2 cut(s)	388, 421
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	404
BbvI	GCAGC	6 cut(s)	370, 392, 613, 786, 800, 803
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	927
BciT130I	CCWGG	1 cut(s)	804
BciVI	GTATCC	1 cut(s)	468
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	56, 222
BfaI	CTAG	4 cut(s)	269, 581, 885, 893
BfmI	CTRYAG	1 cut(s)	384
BfuI	GTATCC	1 cut(s)	468
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	6 cut(s)	381, 384, 627, 789, 792, 800
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	6 cut(s)	382, 385, 628, 790, 793, 801
Bme1390I	CCNGG	2 cut(s)	107, 804
Bme18I	GGWCC	3 cut(s)	695, 889, 909
BmgBI	CACGTC	1 cut(s)	263
BmgT120I	GGNCC	3 cut(s)	695, 889, 909
BmiI	GGNNCC	2 cut(s)	406, 890
BmrFI	CCNGG	2 cut(s)	107, 804
BmrI	ACTGGG	1 cut(s)	820
BmsI	GCATC	2 cut(s)	92, 499
BmuI	ACTGGG	1 cut(s)	820
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	525, 803, 819
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 776
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	218, 815
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	3 cut(s)	525, 803, 819
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	2 cut(s)	207, 776
BseMII	CTCAG	2 cut(s)	51, 644
BseNI	ACTGG	2 cut(s)	218, 815
BseXI	GCAGC	6 cut(s)	370, 392, 613, 786, 800, 803
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	404
BsiSI	CCGG	2 cut(s)	106, 201
BslFI	GGGAC	2 cut(s)	223, 821
BslI	CCNNNNNNNGG	2 cut(s)	207, 776
BsmAI	GTCTC	2 cut(s)	56, 222
BsmFI	GGGAC	2 cut(s)	223, 821
BsnI	GGCC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	340, 508
Bsp1720I	GCTNAGC	1 cut(s)	630
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	2 cut(s)	52, 643
BspLI	GGNNCC	2 cut(s)	406, 890
BspMAI	CTGCAG	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	218, 815
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	525, 803, 819
BssMI	GATC	2 cut(s)	340, 508
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	3 cut(s)	415, 474, 665
Bst6I	CTCTTC	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	5 cut(s)	488, 609, 862, 866, 878
BstDEI	CTNAG	2 cut(s)	60, 630
BstDSI	CCRYGG	1 cut(s)	819
BstF5I	GGATG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	2 cut(s)	343, 511
BstMAI	GTCTC	2 cut(s)	56, 222
BstMBI	GATC	2 cut(s)	340, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 623, 757
BstNI	CCWGG	1 cut(s)	804
BstSCI	CCNGG	2 cut(s)	105, 802
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	6 cut(s)	370, 392, 613, 786, 800, 803
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	819
BtrI	CACGTC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	680
BtsIMutI	CAGTG	2 cut(s)	121, 680
Cac8I	GCNNGC	5 cut(s)	488, 609, 862, 866, 878
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	695, 889, 909
Csp6I	GTAC	4 cut(s)	405, 639, 745, 882
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	2 cut(s)	179, 355
CviJI	RGCY	8 cut(s)	254, 371, 383, 572, 799, 841, 876, 942
CviKI_1	RGCY	8 cut(s)	254, 371, 383, 572, 799, 841, 876, 942
CviQI	GTAC	4 cut(s)	405, 639, 745, 882
DdeI	CTNAG	2 cut(s)	60, 630
DpnI	GATC	2 cut(s)	342, 510
DpnII	GATC	2 cut(s)	340, 508
DraI	TTTAAA	2 cut(s)	480, 565
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	3 cut(s)	695, 889, 909
Eco57I	CTGAAG	2 cut(s)	711, 724
EcoO109I	RGGNCCY	2 cut(s)	695, 889
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	802
EcoRV	GATATC	1 cut(s)	364
FaeI	CATG	2 cut(s)	182, 358
FaqI	GGGAC	2 cut(s)	223, 821
FatI	CATG	2 cut(s)	178, 354
FbaI	TGATCA	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	197
Fnu4HI	GCNGC	6 cut(s)	381, 384, 627, 789, 792, 800
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	6 cut(s)	381, 384, 627, 789, 792, 800
FspBI	CTAG	4 cut(s)	269, 581, 885, 893
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	6 cut(s)	381, 384, 627, 789, 792, 800
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	2 cut(s)	106, 201
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	182, 358
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	5 cut(s)	211, 521, 587, 601, 935
HpaII	CCGG	2 cut(s)	106, 201
HphI	GGTGA	2 cut(s)	335, 791
Hpy166II	GTNNAC	2 cut(s)	198, 439
Hpy188I	TCNGA	4 cut(s)	124, 428, 526, 904
Hpy188III	TCNNGA	2 cut(s)	689, 717
Hpy8I	GTNNAC	2 cut(s)	198, 439
Hpy99I	CGWCG	1 cut(s)	705
HpyAV	CCTTC	3 cut(s)	535, 686, 748
HpyCH4III	ACNGT	3 cut(s)	415, 474, 665
HpyCH4IV	ACGT	3 cut(s)	262, 346, 703
HpyCH4V	TGCA	6 cut(s)	380, 386, 496, 611, 617, 860
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 623, 757
HpyF3I	CTNAG	2 cut(s)	60, 630
HpySE526I	ACGT	3 cut(s)	262, 346, 703
Hsp92II	CATG	2 cut(s)	182, 358
HspAI	GCGC	1 cut(s)	330
KpnI	GGTACC	1 cut(s)	408
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	340, 508
LmnI	GCTCC	1 cut(s)	772
Lsp1109I	GCAGC	6 cut(s)	370, 392, 613, 786, 800, 803
LweI	GCATC	2 cut(s)	92, 499
MaeI	CTAG	4 cut(s)	269, 581, 885, 893
MaeII	ACGT	3 cut(s)	262, 346, 703
MaeIII	GTNAC	4 cut(s)	271, 415, 502, 824
MalI	GATC	2 cut(s)	342, 510
MboI	GATC	2 cut(s)	340, 508
MboII	GAAGA	5 cut(s)	371, 569, 610, 725, 927
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	371
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	205, 610
MnlI	CCTC	7 cut(s)	154, 520, 584, 588, 704, 708, 775
Mox20I	TGGCCA	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	5 cut(s)	410, 479, 564, 660, 949
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	2 cut(s)	106, 201
MspR9I	CCNGG	2 cut(s)	107, 804
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	804
MwoI	GCNNNNNNNGC	3 cut(s)	377, 623, 757
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	2 cut(s)	340, 508
NlaIII	CATG	2 cut(s)	182, 358
NlaIV	GGNNCC	2 cut(s)	406, 890
NmuCI	GTSAC	2 cut(s)	502, 824
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	3 cut(s)	521, 587, 935
PkrI	GCNGC	6 cut(s)	382, 385, 628, 790, 793, 801
PleI	GAGTC	2 cut(s)	205, 609
PpsI	GAGTC	2 cut(s)	205, 609
PpuMI	RGGWCCY	2 cut(s)	695, 889
PsiI	TTATAA	1 cut(s)	9
Psp5II	RGGWCCY	2 cut(s)	695, 889
Psp6I	CCWGG	1 cut(s)	802
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	2 cut(s)	406, 890
PspPI	GGNCC	3 cut(s)	695, 889, 909
PspPPI	RGGWCCY	2 cut(s)	695, 889
PstI	CTGCAG	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	508
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	4 cut(s)	406, 640, 746, 883
RsaNI	GTAC	4 cut(s)	405, 639, 745, 882
SaqAI	TTAA	5 cut(s)	410, 479, 564, 660, 949
SatI	GCNGC	6 cut(s)	381, 384, 627, 789, 792, 800
Sau3AI	GATC	2 cut(s)	340, 508
Sau96I	GGNCC	3 cut(s)	695, 889, 909
SchI	GAGTC	2 cut(s)	205, 610
ScrFI	CCNGG	2 cut(s)	107, 804
SfaNI	GCATC	2 cut(s)	92, 499
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	3 cut(s)	695, 889, 909
SmiI	ATTTAAAT	1 cut(s)	565
SspI	AATATT	2 cut(s)	15, 553
SspMI	CTAG	4 cut(s)	269, 581, 885, 893
StyD4I	CCNGG	2 cut(s)	105, 802
SwaI	ATTTAAAT	1 cut(s)	565
TaaI	ACNGT	3 cut(s)	415, 474, 665
TaiI	ACGT	3 cut(s)	265, 349, 706
TaqI	TCGA	1 cut(s)	700
TfiI	GAWTC	3 cut(s)	521, 587, 935
Tru1I	TTAA	5 cut(s)	410, 479, 564, 660, 949
Tru9I	TTAA	5 cut(s)	410, 479, 564, 660, 949
TscAI	CASTG	2 cut(s)	121, 680
TseFI	GTSAC	2 cut(s)	502, 824
TseI	GCWGC	6 cut(s)	380, 383, 626, 788, 791, 799
Tsp45I	GTSAC	2 cut(s)	502, 824
TspDTI	ATGAA	2 cut(s)	54, 294
TspRI	CASTG	2 cut(s)	121, 680
VpaK11BI	GGWCC	3 cut(s)	695, 889, 909
XapI	RAATTY	3 cut(s)	68, 422, 560
XmiI	GTMKAC	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	4 cut(s)	269, 581, 885, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.