Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008977

Physical Location & Seq

Genomic Coordinates Reverse (-)

34351321 .. 34352667

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44593.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGACACTATTTCTGCTTGTTGATTATATGCACCTTCGTCATGGTGGCGGTGTTGTGGCGTATGCAGAATCACAGTCAGATGTGAGCTCTCCTCCTATTGATTCTAATCAGAATGAGGTTAAGAAAAAGAGAGTGGTGCATCACTTGGTTGAGGGACGAAGCATTGTAGAACCAGTGCGTAATATTATAAAGAAGAGAAATGGAGAGATCAAATATTATGAAGCAGAATGTGTCAAGACTGATGCTGCAAATAAGAATGTTCACCTCCGGGCTAATACTGATAACCCATTGATCGGAACTCCTGAATTTTCCCTGGAGTATGACTACTTGGTTGTAGCTATGGGAGCACAACTAAACACATTTAACACCCCTGGGGTAAAGGAGAACTGTCACTTTCTGAAGGAAGTAGAAGATGCTCAGAAGATTCGTAGAAGTGTTATAGATTGCTTTGAAACTGCTGTACTTCCAGGTCTAAGTGAAGAGGAGCAGAGGAGGAATCTTCATTTTGTAATTGTTGGAGGCGGTCCTACTGGTGTTGAATTTGCTGCAGAGTTGCATGATTATTTCCAAGAAGATTTAGTCAAGTTATATCCTATGGTCAAGGATCTTGTGAAAATAACATTAATCCAATCAGGAGATCATATCTTGAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

219

Amino Acids

24.58

Weight (kDa)

5.72

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	47 - 216	1.3e-22	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28220 AT4G28220
fragaria_vesca	FvH4_6g44592 FvH4_6g44593 FvH4_6g44690
malus_domestica	MD09G1096300.v1.1
prunus_persica	Prupe.3G231400_v2.0.a1
pyrus_communis	pycom09g02080
rosa_chinensis	RchiOBHm_Chr2g0161881
rosa_laevigata	RLG00000021305
rosa_multiflora	Rmu_co8378237.1_g000001 Rmu_sc0008565.1_g000008 Rmu_sc0018381.1_g000008 Rmu_sc0028798.1_g000001
rosa_rugosa	Rorug02G0492800 Rorug02G0492900 Rorug02G0493000
rosa_samantha	Rh2AG558800 Rh2BG572200 Rh2CG542600 Rh2DG582100
rosa_wichuraiana	Rw2G046260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AciI	CCGC	2 cut(s)	48, 522
AclWI	GGATC	1 cut(s)	612
AcsI	RAATTY	2 cut(s)	305, 539
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	3 cut(s)	452, 539, 649
AjnI	CCWGG	3 cut(s)	312, 370, 466
AluBI	AGCT	2 cut(s)	87, 338
AluI	AGCT	2 cut(s)	87, 338
Alw21I	GWGCWC	2 cut(s)	89, 349
AlwI	GGATC	1 cut(s)	612
ApeKI	GCWGC	2 cut(s)	245, 545
ApoI	RAATTY	2 cut(s)	305, 539
AseI	ATTAAT	1 cut(s)	623
AspS9I	GGNCC	1 cut(s)	524
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	89, 349
BbvI	GCAGC	2 cut(s)	232, 532
BciT130I	CCWGG	3 cut(s)	314, 372, 468
BcnI	CCSGG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	2 cut(s)	246, 546
BlsI	GCNGC	2 cut(s)	247, 547
Bme1390I	CCNGG	4 cut(s)	269, 314, 372, 468
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmrFI	CCNGG	4 cut(s)	269, 314, 372, 468
BmsI	GCATC	3 cut(s)	148, 232, 403
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
BpmI	CTGGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	312, 370, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	173, 535
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	3 cut(s)	314, 372, 468
BseDI	CCNNGG	3 cut(s)	312, 370, 371
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	173, 535
BseRI	GAGGAG	3 cut(s)	81, 497, 505
BseXI	GCAGC	2 cut(s)	232, 532
BsiHKAI	GWGCWC	2 cut(s)	89, 349
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	89, 349
Bsp143I	GATC	4 cut(s)	207, 291, 604, 637
BspACI	CCGC	2 cut(s)	48, 522
BspCNI	CTCAG	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	173, 535
BssECI	CCNNGG	3 cut(s)	312, 370, 371
BssMI	GATC	4 cut(s)	207, 291, 604, 637
Bst2UI	CCWGG	3 cut(s)	314, 372, 468
Bst4CI	ACNGT	2 cut(s)	75, 389
Bst6I	CTCTTC	2 cut(s)	188, 474
BstDEI	CTNAG	2 cut(s)	417, 473
BstKTI	GATC	4 cut(s)	210, 294, 607, 640
BstMBI	GATC	4 cut(s)	207, 291, 604, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	3 cut(s)	314, 372, 468
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	4 cut(s)	267, 312, 370, 466
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	232, 532
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	3 cut(s)	41, 557, 652
CviJI	RGCY	3 cut(s)	87, 272, 338
CviKI_1	RGCY	3 cut(s)	87, 272, 338
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	2 cut(s)	417, 473
DpnI	GATC	4 cut(s)	209, 293, 606, 639
DpnII	GATC	4 cut(s)	207, 291, 604, 637
Eam1104I	CTCTTC	2 cut(s)	188, 474
EarI	CTCTTC	2 cut(s)	188, 474
Ecl136II	GAGCTC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	524
Eco53kI	GAGCTC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	87
EcoRII	CCWGG	3 cut(s)	312, 370, 466
EcoT38I	GRGCYC	1 cut(s)	89
FaeI	CATG	3 cut(s)	44, 560, 655
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	3 cut(s)	40, 556, 651
Fnu4HI	GCNGC	2 cut(s)	246, 546
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	246, 546
GluI	GCNGC	2 cut(s)	246, 546
GsuI	CTGGAG	1 cut(s)	335
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	3 cut(s)	44, 560, 655
HinfI	GANTC	4 cut(s)	68, 101, 424, 496
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	5 cut(s)	79, 111, 296, 399, 420
Hpy188III	TCNNGA	4 cut(s)	235, 302, 633, 646
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	44, 394
HpyCH4III	ACNGT	2 cut(s)	75, 389
HpyCH4V	TGCA	6 cut(s)	31, 65, 139, 248, 548, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	417, 473
Hsp92II	CATG	3 cut(s)	44, 560, 655
Kzo9I	GATC	4 cut(s)	207, 291, 604, 637
LmnI	GCTCC	2 cut(s)	344, 484
Lsp1109I	GCAGC	2 cut(s)	232, 532
LweI	GCATC	3 cut(s)	148, 232, 403
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	4 cut(s)	209, 293, 606, 639
MboI	GATC	4 cut(s)	207, 291, 604, 637
MboII	GAAGA	6 cut(s)	205, 422, 433, 491, 491, 584
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	2 cut(s)	89, 349
MluCI	AATT	3 cut(s)	305, 510, 539
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	8 cut(s)	102, 109, 145, 275, 475, 483, 486, 512
MseI	TTAA	3 cut(s)	120, 363, 623
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	4 cut(s)	269, 314, 372, 468
MvaI	CCWGG	3 cut(s)	314, 372, 468
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	4 cut(s)	207, 291, 604, 637
NlaIII	CATG	3 cut(s)	44, 560, 655
NmuCI	GTSAC	1 cut(s)	389
NspI	RCATGY	1 cut(s)	655
PasI	CCCWGGG	1 cut(s)	371
PciI	ACATGT	1 cut(s)	651
PfeI	GAWTC	4 cut(s)	68, 101, 424, 496
PkrI	GCNGC	2 cut(s)	247, 547
PscI	ACATGT	1 cut(s)	651
PshBI	ATTAAT	1 cut(s)	623
PsiI	TTATAA	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	89
Psp6I	CCWGG	3 cut(s)	312, 370, 466
PspGI	CCWGG	3 cut(s)	312, 370, 466
PspPI	GGNCC	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	120, 363, 623
SatI	GCNGC	2 cut(s)	246, 546
Sau3AI	GATC	4 cut(s)	207, 291, 604, 637
Sau96I	GGNCC	1 cut(s)	524
ScrFI	CCNGG	4 cut(s)	269, 314, 372, 468
SduI	GDGCHC	2 cut(s)	89, 349
SetI	ASST	6 cut(s)	36, 89, 120, 267, 340, 472
SfaNI	GCATC	3 cut(s)	148, 232, 403
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	1 cut(s)	524
Sse9I	AATT	3 cut(s)	305, 510, 539
SsiI	CCGC	2 cut(s)	48, 522
SspI	AATATT	2 cut(s)	184, 215
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	4 cut(s)	267, 312, 370, 466
TaaI	ACNGT	2 cut(s)	75, 389
TasI	AATT	3 cut(s)	305, 510, 539
TatI	WGTACW	1 cut(s)	460
TfiI	GAWTC	4 cut(s)	68, 101, 424, 496
Tru1I	TTAA	3 cut(s)	120, 363, 623
Tru9I	TTAA	3 cut(s)	120, 363, 623
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	2 cut(s)	245, 545
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	2 cut(s)	234, 491
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	524
VspI	ATTAAT	1 cut(s)	623
XapI	RAATTY	2 cut(s)	305, 539
XceI	RCATGY	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.