Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008977

Physical Location & Seq

Genomic Coordinates Reverse (-)

62177045 .. 62177763

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0492900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAATTCAAGTCCTAACTCCGCAGCTGCGTACACCGCTCCGGCTTCTCAACAGGGACCTTACGTCCAGGCGCCGCCTCCTGCAGGCTATCCCACCACGAGAGACGGCTCCGACTTGCCCGGGAGCGACGGTCGTGTCGAAACCAAGCCGAAGGGCGATGGCTTCTGGAAGGGTGTCTGTGGTGCCTTGTGTTGCTGTTGTATGTTGGATGCTTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

73

Amino Acids

7.47

Weight (kDa)

4.85

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYSTM	PF12734	21 - 73	2.1e-08	Cysteine-rich TM module stress tolerance

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28220 AT4G28220
fragaria_vesca	FvH4_6g44592 FvH4_6g44593 FvH4_6g44690
malus_domestica	MD09G1096300.v1.1
prunus_persica	Prupe.3G231400_v2.0.a1
pyrus_communis	pycom09g02080
rosa_chinensis	RchiOBHm_Chr2g0161881
rosa_laevigata	RLG00000021305
rosa_multiflora	Rmu_co8378237.1_g000001 Rmu_sc0008565.1_g000008 Rmu_sc0018381.1_g000008 Rmu_sc0028798.1_g000001
rosa_rugosa	Rorug02G0492800 Rorug02G0492900 Rorug02G0493000
rosa_samantha	Rh2AG558800 Rh2BG572200 Rh2CG542600 Rh2DG582100
rosa_wichuraiana	Rw2G046260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	70, 182
AccBSI	CCGCTC	1 cut(s)	38
AciI	CCGC	3 cut(s)	21, 36, 74
AcsI	RAATTY	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	9
AhdI	GACNNNNNGTC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	96
Ama87I	CYCGRG	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	23, 26
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	2 cut(s)	120, 121
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	70, 182
BauI	CACGAG	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	13, 35
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	68
BcnI	CCSGG	2 cut(s)	120, 121
BcoDI	GTCTC	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	3 cut(s)	24, 27, 74
BlsI	GCNGC	3 cut(s)	25, 28, 75
Bme1390I	CCNGG	3 cut(s)	68, 120, 121
Bme18I	GGWCC	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	4 cut(s)	57, 72, 109, 184
BmrFI	CCNGG	3 cut(s)	68, 120, 121
BmsI	GCATC	1 cut(s)	199
BpuMI	CCSGG	2 cut(s)	120, 121
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	13, 35
Bsh1285I	CGRYCG	1 cut(s)	133
BshNI	GGYRCC	2 cut(s)	70, 182
BsiEI	CGRYCG	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	41, 120
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	119
BspACI	CCGC	3 cut(s)	21, 36, 74
BspLI	GGNNCC	4 cut(s)	57, 72, 109, 184
BspMAI	CTGCAG	1 cut(s)	85
BspT107I	GGYRCC	2 cut(s)	70, 182
BsrBI	CCGCTC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	119
BssNI	GRCGYC	1 cut(s)	71
BssSI	CACGAG	1 cut(s)	97
Bst2BI	CACGAG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	85, 214
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	96
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	3 cut(s)	66, 118, 119
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	13, 35
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	85, 214
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	56
Cfr9I	CCCGGG	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	31
CviJI	RGCY	6 cut(s)	26, 44, 87, 108, 148, 162
CviKI_1	RGCY	6 cut(s)	26, 44, 87, 108, 148, 162
CviQI	GTAC	1 cut(s)	31
DinI	GGCGCC	1 cut(s)	72
DrdI	GACNNNNNNGTC	1 cut(s)	134
DriI	GACNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	66
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	96
FaiI	YATR	1 cut(s)	203
FaqI	GGGAC	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	24, 27, 74
Fsp4HI	GCNGC	3 cut(s)	24, 27, 74
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	3 cut(s)	24, 27, 74
HaeII	RGCGCY	1 cut(s)	74
HapII	CCGG	2 cut(s)	41, 120
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	41, 120
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	145, 163
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	71
HspAI	GCGC	1 cut(s)	71
KasI	GGCGCC	1 cut(s)	70
LmnI	GCTCC	3 cut(s)	43, 113, 123
LpnPI	CCDG	8 cut(s)	38, 53, 54, 69, 80, 93, 133, 151
Lsp1109I	GCAGC	2 cut(s)	13, 35
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	63
MbiI	CCGCTC	1 cut(s)	38
MluCI	AATT	1 cut(s)	4
Mly113I	GGCGCC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	135, 186
MnlI	CCTC	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	41, 120
MspR9I	CCNGG	3 cut(s)	68, 120, 121
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	35
NarI	GGCGCC	1 cut(s)	71
NciI	CCSGG	2 cut(s)	120, 121
NlaIV	GGNNCC	4 cut(s)	57, 72, 109, 184
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	25, 28, 75
PluTI	GGCGCC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	4 cut(s)	57, 72, 109, 184
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SatI	GCNGC	3 cut(s)	24, 27, 74
Sau96I	GGNCC	1 cut(s)	56
SbfI	CCTGCAGG	1 cut(s)	85
ScrFI	CCNGG	3 cut(s)	68, 120, 121
SdaI	CCTGCAGG	1 cut(s)	85
SetI	ASST	3 cut(s)	28, 61, 66
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	81
SfoI	GGCGCC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	56
SmaI	CCCGGG	1 cut(s)	121
Sse8387I	CCTGCAGG	1 cut(s)	85
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	3 cut(s)	21, 36, 74
SspDI	GGCGCC	1 cut(s)	70
StyD4I	CCNGG	3 cut(s)	66, 118, 119
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	4
TauI	GCSGC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	23, 26
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	4
XmaI	CCCGGG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.