FvH4_6g44690

External alternative NAD(P)H-ubiquinone oxidoreductase B1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
34403720 .. 34408997
5278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44690.t1

Sequence Viewer

Length: 1443 bp
ATGACCATCTCGTCCTTCTTCATCCGAGCTTCAAGAGCTATCCATGACCACCCTGTTGCTCCCAAGCTTCTACTGCTCGCCACTGTCAGTGGTGGAGGTGTTGTGGCGTATGCAGAATCACAGTCAGATGTGAGCTCTCCTCCTATTGATTCTAATCAGAATGAGGTTAAGAAAAAGAGAGTGGTGGTTCTTGGGACAGGATGGGCCGGTACTAGTTTCCTTAAGCATGTGGATGCTTCACATTATGATGTTCAGCTTGTTTCACCCAGAAACTATTTTGCATTTACCCCTTTGTTACCTAGCATCACTTGTGGAACGGTTGAGGCACGAAGCATTGTAGAACCAGTGCGTAATATGATAAAGAAGAGAAATGGAGAGATCAAATATTATGAAGCAGAATGTGTCAAGATTGATGCTGCAAATAAGAATGTTCACCTCCGGGCTAATACTGATAACCCTTTGATCGGAACTCCTGAATTTTCCCTGGAGTATGACTACTTGGTTGTAGCTATGGGAGCACAAGTAAACACATTTGACACCCCTGGGGTAAAGGAGAACTGTCACTTTCTGAAGGAAGTAGAAGATGCTCAGAAGATTCGTAGAAGTGTTATAGATTGCTTTGAAACTGCTGTACTTCCAGGTCTAAGTGAAGAGGAGCAGAGGAGGAATCTTCATTTTGTAATTGTTGGAGGCGGTCCTACTGGTGTTGAATTTGCTGCAGAGTTGCATGATTATTTCCAAGAAGATTTAGTCAAGTTATATCCTATGGTCAAGGATCTTGTGAAAATAACATTAATCCAATCAGGAGATCATATCTTGAACATGTTTGATGAAAGAATTAGTAATTTTGCTGAGACCAAGTTCCAAAGAGATGGCATTGATGTTCAAACAGGATGCCGGGTTGTCAGTGTTTCAGATAAGGAAATCAAAGTGAAGGTGAAATCAAAGGGAGAGGTCTGCTCTGTTCCACATGGAATGGTGGTCTGGTCTACTGGTGTTGGGACTCGTCCAGTTGTGAGAGACTTTATGGAACAAGTTGGACAGGCTAATAGACGTGTGCTAGTAACTGATGAATGGTTACGTGTAAAGGGATGTGATGATGTTTATGCGATTGGTGATTGCGCTACAATCAATCAACGTAAAATCATGGAGGACATCGTGGCCATATTTGCAGCTGCAGACAAAGACAAATCTGGTACCTTGACAGTTGCTGAATTTCGAGATGTAGTTGACGACATAATCATTAGGTATCCCCAAGTGGAACATTATTTACAGAGCAAGCATATGCAGGATGTGACTGATCTATTGAAAGATTCCAAGGGTAATGATAGGAAAGAAGTGAATATTGAAGAATTTAAATTAGCCCTCTCTCTAGTGGATTCACAGAGAAAGAGTCTGCCCGCAACCGCACAGGTACGTCTTCAATCTGGTTGGAGGAAATAG

Protein Analysis

481

Amino Acids

53.6

Weight (kDa)

6.1

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 60 - 388 1.9e-57 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 225 - 313 5.2e-11 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
Acc65I GGTACC 1 cut(s) 1196
AccB1I GGYRCC 1 cut(s) 1196
AccI GTMKAC 1 cut(s) 989
AciI CCGC 3 cut(s) 693, 1401, 1407
AclWI GGATC 1 cut(s) 783
AcoI YGGCCR 1 cut(s) 1161
AcsI RAATTY 4 cut(s) 476, 710, 1214, 1352
AcuI CTGAAG 1 cut(s) 590
AfaI GTAC 4 cut(s) 211, 633, 1198, 1416
AfiI CCNNNNNNNGG 1 cut(s) 464
AflII CTTAAG 1 cut(s) 221
AflIII ACRYGT 3 cut(s) 822, 1054, 1081
AgsI TTSAA 8 cut(s) 33, 623, 710, 820, 887, 1309, 1349, 1424
AhlI ACTAGT 1 cut(s) 212
AjiI CACGTC 1 cut(s) 1055
AjnI CCWGG 3 cut(s) 483, 541, 637
AluBI AGCT 7 cut(s) 29, 38, 67, 135, 256, 509, 1175
AluI AGCT 7 cut(s) 29, 38, 67, 135, 256, 509, 1175
Alw21I GWGCWC 2 cut(s) 137, 520
Alw26I GTCTC 2 cut(s) 848, 1014
AlwI GGATC 1 cut(s) 783
AlwNI CAGNNNCTG 1 cut(s) 1211
AoxI GGCC 2 cut(s) 204, 1161
ApeKI GCWGC 4 cut(s) 416, 716, 1172, 1175
ApoI RAATTY 4 cut(s) 476, 710, 1214, 1352
AseI ATTAAT 1 cut(s) 794
Asp718I GGTACC 1 cut(s) 1196
AspLEI GCGC 1 cut(s) 1124
AspS9I GGNCC 2 cut(s) 204, 695
AsuC2I CCSGG 2 cut(s) 440, 899
AsuHPI GGTGA 4 cut(s) 255, 425, 949, 1127
AvaII GGWCC 1 cut(s) 695
BalI TGGCCA 1 cut(s) 1163
BanI GGYRCC 1 cut(s) 1196
BanII GRGCYC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 1412
Bbv12I GWGCWC 2 cut(s) 137, 520
BbvI GCAGC 4 cut(s) 403, 703, 1162, 1184
BccI CCATC 3 cut(s) 14, 195, 866
BciT130I CCWGG 3 cut(s) 485, 543, 639
BciVI GTATCC 1 cut(s) 1260
BcnI CCSGG 2 cut(s) 440, 899
BcoDI GTCTC 2 cut(s) 848, 1014
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 4 cut(s) 213, 300, 1061, 1373
BfmI CTRYAG 2 cut(s) 717, 1176
BfrI CTTAAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 1260
BisI GCNGC 4 cut(s) 417, 717, 1173, 1176
BlsI GCNGC 4 cut(s) 418, 718, 1174, 1177
Bme1390I CCNGG 5 cut(s) 440, 485, 543, 639, 899
Bme18I GGWCC 1 cut(s) 695
BmgBI CACGTC 1 cut(s) 1055
BmgT120I GGNCC 2 cut(s) 204, 695
BmiI GGNNCC 1 cut(s) 1198
BmrFI CCNGG 5 cut(s) 440, 485, 543, 639, 899
BmsI GCATC 5 cut(s) 223, 312, 403, 574, 884
BpiI GAAGAC 1 cut(s) 1412
BplI GAGNNNNNCTC 4 cut(s) 124, 156, 944, 976
BpmI CTGGAG 1 cut(s) 506
BpuMI CCSGG 2 cut(s) 440, 899
BsaAI YACGTR 1 cut(s) 1082
BsaBI GATNNNNATC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 848
BsaJI CCNNGG 4 cut(s) 483, 541, 542, 1317
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 507, 537
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 4 cut(s) 344, 706, 997, 1010
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 3 cut(s) 485, 543, 639
BseDI CCNNGG 4 cut(s) 483, 541, 542, 1317
BseGI GGATG 6 cut(s) 21, 206, 238, 899, 1097, 1297
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMII CTCAG 2 cut(s) 602, 843
BseNI ACTGG 4 cut(s) 344, 706, 997, 1010
BseRI GAGGAG 3 cut(s) 129, 668, 676
BseXI GCAGC 4 cut(s) 403, 703, 1162, 1184
BshFI GGCC 2 cut(s) 206, 1163
BshNI GGYRCC 1 cut(s) 1196
BsiHKAI GWGCWC 2 cut(s) 137, 520
BsiSI CCGG 3 cut(s) 207, 439, 898
BslFI GGGAC 2 cut(s) 208, 1015
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 2 cut(s) 848, 1014
BsmFI GGGAC 2 cut(s) 208, 1015
BsnI GGCC 2 cut(s) 206, 1163
Bso31I GGTCTC 1 cut(s) 848
Bsp1286I GDGCHC 2 cut(s) 137, 520
Bsp143I GATC 5 cut(s) 378, 462, 775, 808, 1300
BspACI CCGC 3 cut(s) 693, 1401, 1407
BspANI GGCC 2 cut(s) 206, 1163
BspCNI CTCAG 2 cut(s) 601, 844
BspLI GGNNCC 1 cut(s) 1198
BspMAI CTGCAG 2 cut(s) 721, 1180
BspPI GGATC 1 cut(s) 783
BspT107I GGYRCC 1 cut(s) 1196
BspTI CTTAAG 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 848
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 4 cut(s) 344, 706, 997, 1010
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 4 cut(s) 483, 541, 542, 1317
BssMI GATC 5 cut(s) 378, 462, 775, 808, 1300
BssT1I CCWWGG 1 cut(s) 1317
Bst2UI CCWGG 3 cut(s) 485, 543, 639
Bst4CI ACNGT 5 cut(s) 85, 123, 319, 560, 1207
Bst6I CTCTTC 2 cut(s) 359, 645
BstAFI CTTAAG 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 1082
BstC8I GCNNGC 3 cut(s) 78, 1280, 1401
BstDEI CTNAG 3 cut(s) 588, 644, 852
BstF5I GGATG 6 cut(s) 21, 206, 238, 899, 1097, 1297
BstHHI GCGC 1 cut(s) 1124
BstKTI GATC 5 cut(s) 381, 465, 778, 811, 1303
BstMAI GTCTC 2 cut(s) 848, 1014
BstMBI GATC 5 cut(s) 378, 462, 775, 808, 1300
BstMWI GCNNNNNNNGC 4 cut(s) 35, 73, 515, 1169
BstNI CCWGG 3 cut(s) 485, 543, 639
BstNSI RCATGY 2 cut(s) 230, 826
BstSCI CCNGG 5 cut(s) 438, 483, 541, 637, 897
BstSFI CTRYAG 2 cut(s) 717, 1176
BstV1I GCAGC 4 cut(s) 403, 703, 1162, 1184
BstV2I GAAGAC 1 cut(s) 1412
BstX2I RGATCY 1 cut(s) 775
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 1 cut(s) 775
BsuI GTATCC 1 cut(s) 1260
BsuRI GGCC 2 cut(s) 206, 1163
BtrI CACGTC 1 cut(s) 1055
BtsCI GGATG 6 cut(s) 21, 206, 238, 899, 1097, 1297
BtsIMutI CAGTG 4 cut(s) 81, 94, 351, 913
Cac8I GCNNGC 3 cut(s) 78, 1280, 1401
CaiI CAGNNNCTG 1 cut(s) 1211
CfoI GCGC 1 cut(s) 1124
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 204, 695
Csp6I GTAC 4 cut(s) 210, 632, 1197, 1415
CviAII CATG 6 cut(s) 44, 227, 728, 823, 971, 1147
CviQI GTAC 4 cut(s) 210, 632, 1197, 1415
DdeI CTNAG 3 cut(s) 588, 644, 852
DpnI GATC 5 cut(s) 380, 464, 777, 810, 1302
DpnII GATC 5 cut(s) 378, 462, 775, 808, 1300
DraI TTTAAA 1 cut(s) 1357
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 1161
Eam1104I CTCTTC 2 cut(s) 359, 645
EarI CTCTTC 2 cut(s) 359, 645
Ecl136II GAGCTC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 1317
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 848
Eco47I GGWCC 1 cut(s) 695
Eco53kI GAGCTC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 590
EcoICRI GAGCTC 1 cut(s) 135
EcoRII CCWGG 3 cut(s) 483, 541, 637
EcoT14I CCWWGG 1 cut(s) 1317
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 1317
FaeI CATG 6 cut(s) 47, 230, 731, 826, 974, 1150
FaqI GGGAC 2 cut(s) 208, 1015
FatI CATG 6 cut(s) 43, 226, 727, 822, 970, 1146
FauI CCCGC 1 cut(s) 1408
FauNDI CATATG 1 cut(s) 1284
FblI GTMKAC 1 cut(s) 989
Fnu4HI GCNGC 4 cut(s) 417, 717, 1173, 1176
FokI GGATG 6 cut(s) 8, 213, 245, 906, 1104, 1304
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 417, 717, 1173, 1176
FspBI CTAG 4 cut(s) 213, 300, 1061, 1373
GlaI GCGC 1 cut(s) 1123
GluI GCNGC 4 cut(s) 417, 717, 1173, 1176
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 2 cut(s) 206, 1163
HapII CCGG 3 cut(s) 207, 439, 898
HhaI GCGC 1 cut(s) 1124
Hin1II CATG 6 cut(s) 47, 230, 731, 826, 974, 1150
Hin6I GCGC 1 cut(s) 1122
HinP1I GCGC 1 cut(s) 1122
HincII GTYRAC 1 cut(s) 1231
HindII GTYRAC 1 cut(s) 1231
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 8 cut(s) 116, 149, 595, 667, 1003, 1313, 1379, 1393
HpaII CCGG 3 cut(s) 207, 439, 898
HphI GGTGA 4 cut(s) 255, 425, 949, 1127
Hpy166II GTNNAC 4 cut(s) 433, 526, 990, 1231
Hpy188I TCNGA 7 cut(s) 26, 127, 159, 467, 570, 591, 916
Hpy188III TCNNGA 6 cut(s) 33, 406, 473, 804, 817, 1220
Hpy8I GTNNAC 4 cut(s) 433, 526, 990, 1231
HpyAV CCTTC 3 cut(s) 25, 565, 928
HpyCH4III ACNGT 5 cut(s) 85, 123, 319, 560, 1207
HpyCH4IV ACGT 4 cut(s) 1054, 1081, 1138, 1417
HpyCH4V TGCA 8 cut(s) 113, 281, 419, 719, 727, 1172, 1178, 1288
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 73, 515, 1169
HpyF3I CTNAG 3 cut(s) 588, 644, 852
HpySE526I ACGT 4 cut(s) 1054, 1081, 1138, 1417
Hsp92II CATG 6 cut(s) 47, 230, 731, 826, 974, 1150
HspAI GCGC 1 cut(s) 1122
KpnI GGTACC 1 cut(s) 1200
Kzo9I GATC 5 cut(s) 378, 462, 775, 808, 1300
LmnI GCTCC 3 cut(s) 64, 515, 655
Lsp1109I GCAGC 4 cut(s) 403, 703, 1162, 1184
LweI GCATC 5 cut(s) 223, 312, 403, 574, 884
MaeI CTAG 4 cut(s) 213, 300, 1061, 1373
MaeII ACGT 4 cut(s) 1054, 1081, 1138, 1417
MaeIII GTNAC 5 cut(s) 294, 560, 1063, 1077, 1294
MalI GATC 5 cut(s) 380, 464, 777, 810, 1302
MboI GATC 5 cut(s) 378, 462, 775, 808, 1300
MboII GAAGA 9 cut(s) 10, 376, 593, 604, 662, 662, 755, 1361, 1412
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 137, 520
MlsI TGGCCA 1 cut(s) 1163
MluCI AATT 8 cut(s) 476, 681, 710, 837, 844, 1214, 1352, 1358
MluNI TGGCCA 1 cut(s) 1163
MlyI GAGTC 2 cut(s) 997, 1402
MmeI TCCRAC 3 cut(s) 667, 1018, 1412
Mox20I TGGCCA 1 cut(s) 1163
MscI TGGCCA 1 cut(s) 1163
MseI TTAA 4 cut(s) 168, 222, 794, 1356
MslI CAYNNNNRTG 2 cut(s) 231, 246
Msp20I TGGCCA 1 cut(s) 1163
MspA1I CMGCKG 1 cut(s) 1175
MspCI CTTAAG 1 cut(s) 221
MspI CCGG 3 cut(s) 207, 439, 898
MspR9I CCNGG 5 cut(s) 440, 485, 543, 639, 899
MvaI CCWGG 3 cut(s) 485, 543, 639
MwoI GCNNNNNNNGC 4 cut(s) 35, 73, 515, 1169
NciI CCSGG 2 cut(s) 440, 899
NdeI CATATG 1 cut(s) 1284
NdeII GATC 5 cut(s) 378, 462, 775, 808, 1300
NlaIII CATG 6 cut(s) 47, 230, 731, 826, 974, 1150
NlaIV GGNNCC 1 cut(s) 1198
NmuCI GTSAC 2 cut(s) 560, 1294
NspI RCATGY 2 cut(s) 230, 826
PasI CCCWGGG 1 cut(s) 542
PciI ACATGT 1 cut(s) 822
PfeI GAWTC 6 cut(s) 116, 149, 595, 667, 1313, 1379
PkrI GCNGC 4 cut(s) 418, 718, 1174, 1177
PleI GAGTC 2 cut(s) 997, 1401
PpsI GAGTC 2 cut(s) 997, 1401
Ppu21I YACGTR 1 cut(s) 1082
PscI ACATGT 1 cut(s) 822
PshBI ATTAAT 1 cut(s) 794
Psp124BI GAGCTC 1 cut(s) 137
Psp6I CCWGG 3 cut(s) 483, 541, 637
PspGI CCWGG 3 cut(s) 483, 541, 637
PspN4I GGNNCC 1 cut(s) 1198
PspPI GGNCC 2 cut(s) 204, 695
PsrI GAACNNNNNNTAC 2 cut(s) 1254, 1286
PstI CTGCAG 2 cut(s) 721, 1180
PstNI CAGNNNCTG 1 cut(s) 1211
PsuI RGATCY 1 cut(s) 775
PvuII CAGCTG 1 cut(s) 1175
RsaI GTAC 4 cut(s) 211, 633, 1198, 1416
RsaNI GTAC 4 cut(s) 210, 632, 1197, 1415
RseI CAYNNNNRTG 2 cut(s) 231, 246
SacI GAGCTC 1 cut(s) 137
SaqAI TTAA 4 cut(s) 168, 222, 794, 1356
SatI GCNGC 4 cut(s) 417, 717, 1173, 1176
Sau3AI GATC 5 cut(s) 378, 462, 775, 808, 1300
Sau96I GGNCC 2 cut(s) 204, 695
SchI GAGTC 2 cut(s) 997, 1402
ScrFI CCNGG 5 cut(s) 440, 485, 543, 639, 899
SduI GDGCHC 2 cut(s) 137, 520
SfaNI GCATC 5 cut(s) 223, 312, 403, 574, 884
SfcI CTRYAG 2 cut(s) 717, 1176
SinI GGWCC 1 cut(s) 695
SmiI ATTTAAAT 1 cut(s) 1357
SmiMI CAYNNNNRTG 2 cut(s) 231, 246
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 8 cut(s) 476, 681, 710, 837, 844, 1214, 1352, 1358
SsiI CCGC 3 cut(s) 693, 1401, 1407
SspI AATATT 2 cut(s) 386, 1345
SspMI CTAG 4 cut(s) 213, 300, 1061, 1373
SstI GAGCTC 1 cut(s) 137
StyD4I CCNGG 5 cut(s) 438, 483, 541, 637, 897
StyI CCWWGG 1 cut(s) 1317
SwaI ATTTAAAT 1 cut(s) 1357
TaaI ACNGT 5 cut(s) 85, 123, 319, 560, 1207
TaiI ACGT 4 cut(s) 1057, 1084, 1141, 1420
TaqI TCGA 1 cut(s) 1219
TasI AATT 8 cut(s) 476, 681, 710, 837, 844, 1214, 1352, 1358
TatI WGTACW 1 cut(s) 631
TfiI GAWTC 6 cut(s) 116, 149, 595, 667, 1313, 1379
Tru1I TTAA 4 cut(s) 168, 222, 794, 1356
Tru9I TTAA 4 cut(s) 168, 222, 794, 1356
TscAI CASTG 4 cut(s) 88, 94, 351, 913
TseFI GTSAC 2 cut(s) 560, 1294
TseI GCWGC 4 cut(s) 416, 716, 1172, 1175
Tsp45I GTSAC 2 cut(s) 560, 1294
TspDTI ATGAA 5 cut(s) 10, 405, 662, 846, 1086
TspRI CASTG 4 cut(s) 88, 94, 351, 913
Vha464I CTTAAG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 695
VspI ATTAAT 1 cut(s) 794
XapI RAATTY 4 cut(s) 476, 710, 1214, 1352
XceI RCATGY 2 cut(s) 230, 826
XmiI GTMKAC 1 cut(s) 989
XspI CTAG 4 cut(s) 213, 300, 1061, 1373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.