Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008977

Physical Location & Seq

Genomic Coordinates Forward (+)

1520471 .. 1522126

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAGGTGAAATCGAAGGGAGAGGTTTGCTCTATACCACATGGCTTGGTTGTGTGGTCTACTGGTATTGGGACTCGTCCAGTTGTGAGGGACTTTATGCAACAAATTGGGCAGGCTGATAAACGTGTTCTAGTAACTGACGAATGGCTGCGTGTAAAGGGATGTGAAGATGTGTATGCCATTGGTGATTGTGCTTCAATTAGTCAACGTAAAATCATGGAAGATATCTTCACCATATTTAAAGCTGCGGACAAAGATAACTCTGGTACCTTAACAGTTGATGAATTTCGAGATGTAGTTGACGACATAATCATAAGGTACCCCCAAGTGGAACTCTATTTACAGAGCAAGCATCTGCAGGATGTGACAGACCTATGGAAAGATCTTGATGGTAGTGATAAGAAGGAAGTGAACGTGGAAGAATTTAAATTAGCCCTTTCTCAAGTGGATTCACAGATGAAGAGTCTGCCTGCAACTGCTCAGGTTGCTGCGCAACAGGGAACATATCTTTCTAGTTGCTTTAACCGGAGAGAGCACTGCAAAGACCATCCTGAAGGTCCGAGGCGTTTTAAAAGTTCTGGGCAACATGAGTTTCTTCCCTTTCGGTACAAGCATTTCGGGCAATTTGCTCCGTTGGGGGGAGAGCAAGCAGCAGCAGAGCTACCCGGAGACTGGGTTTCCATGGGTCATAGCACACAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACTAGGGTTCTTGTGGTATCGGACTGGACCAGGAGATTCATTTTCGGGAGAGATTCAAGCCGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

271

Amino Acids

30.84

Weight (kDa)

7.05

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28220 AT4G28220
fragaria_vesca	FvH4_6g44592 FvH4_6g44593 FvH4_6g44690
malus_domestica	MD09G1096300.v1.1
prunus_persica	Prupe.3G231400_v2.0.a1
pyrus_communis	pycom09g02080
rosa_chinensis	RchiOBHm_Chr2g0161881
rosa_laevigata	RLG00000021305
rosa_multiflora	Rmu_co8378237.1_g000001 Rmu_sc0008565.1_g000008 Rmu_sc0018381.1_g000008 Rmu_sc0028798.1_g000001
rosa_rugosa	Rorug02G0492800 Rorug02G0492900 Rorug02G0493000
rosa_samantha	Rh2AG558800 Rh2BG572200 Rh2CG542600 Rh2DG582100
rosa_wichuraiana	Rw2G046260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	492
Acc65I	GGTACC	2 cut(s)	266, 318
AccB1I	GGYRCC	2 cut(s)	266, 318
AccI	GTMKAC	1 cut(s)	59
AciI	CCGC	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	284, 422
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	3 cut(s)	268, 320, 608
AfiI	CCNNNNNNNGG	3 cut(s)	328, 638, 672
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	198, 801
AjnI	CCWGG	1 cut(s)	773
AluBI	AGCT	3 cut(s)	245, 661, 738
AluI	AGCT	3 cut(s)	245, 661, 738
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	1 cut(s)	663
ApeKI	GCWGC	5 cut(s)	148, 245, 488, 650, 653
ApoI	RAATTY	2 cut(s)	284, 422
Asp718I	GGTACC	2 cut(s)	266, 318
AspLEI	GCGC	2 cut(s)	493, 744
AspS9I	GGNCC	2 cut(s)	557, 771
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	3 cut(s)	19, 197, 223
AvaII	GGWCC	2 cut(s)	557, 771
BaeI	ACNNNNGTAYC	2 cut(s)	250, 283
BanI	GGYRCC	2 cut(s)	266, 318
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	5 cut(s)	135, 232, 475, 662, 665
BccI	CCATC	2 cut(s)	383, 555
BceAI	ACGGC	1 cut(s)	789
BciT130I	CCWGG	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	663
BfaI	CTAG	3 cut(s)	131, 513, 747
BfmI	CTRYAG	1 cut(s)	356
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	5 cut(s)	149, 246, 489, 651, 654
BlsI	GCNGC	5 cut(s)	150, 247, 490, 652, 655
Bme1390I	CCNGG	2 cut(s)	666, 775
Bme18I	GGWCC	2 cut(s)	557, 771
BmgT120I	GGNCC	2 cut(s)	557, 771
BmiI	GGNNCC	2 cut(s)	268, 320
BmrFI	CCNGG	2 cut(s)	666, 775
BmrI	ACTGGG	1 cut(s)	682
BmsI	GCATC	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	682
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	560, 681
BsaWI	WCCGGW	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 638, 672
Bse1I	ACTGG	4 cut(s)	67, 80, 677, 773
BseBI	CCWGG	1 cut(s)	775
BseDI	CCNNGG	2 cut(s)	560, 681
BseGI	GGATG	3 cut(s)	167, 367, 547
BseLI	CCNNNNNNNGG	3 cut(s)	328, 638, 672
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	4 cut(s)	67, 80, 677, 773
BseXI	GCAGC	5 cut(s)	135, 232, 475, 662, 665
BshNI	GGYRCC	2 cut(s)	266, 318
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	2 cut(s)	526, 666
BslFI	GGGAC	2 cut(s)	85, 104
BslI	CCNNNNNNNGG	3 cut(s)	328, 638, 672
BsmAI	GTCTC	1 cut(s)	663
BsmFI	GGGAC	2 cut(s)	85, 104
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	1 cut(s)	382
Bsp19I	CCATGG	1 cut(s)	681
BspACI	CCGC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	268, 320
BspMAI	CTGCAG	1 cut(s)	360
BspT107I	GGYRCC	2 cut(s)	266, 318
BsrI	ACTGG	4 cut(s)	67, 80, 677, 773
BssECI	CCNNGG	2 cut(s)	560, 681
BssMI	GATC	1 cut(s)	382
BssT1I	CCWWGG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	775
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	455
BstC8I	GCNNGC	7 cut(s)	114, 350, 471, 648, 724, 728, 740
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	3 cut(s)	167, 367, 547
BstHHI	GCGC	2 cut(s)	493, 744
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	663
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 619
BstNI	CCWGG	1 cut(s)	775
BstSCI	CCNGG	2 cut(s)	664, 773
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	5 cut(s)	135, 232, 475, 662, 665
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BtgI	CCRYGG	1 cut(s)	681
BtsCI	GGATG	3 cut(s)	167, 367, 547
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	535
Cac8I	GCNNGC	7 cut(s)	114, 350, 471, 648, 724, 728, 740
CfoI	GCGC	2 cut(s)	493, 744
Cfr13I	GGNCC	2 cut(s)	557, 771
Csp6I	GTAC	3 cut(s)	267, 319, 607
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	4 cut(s)	41, 217, 587, 682
CviJI	RGCY	9 cut(s)	45, 116, 148, 245, 434, 661, 703, 738, 804
CviKI_1	RGCY	9 cut(s)	45, 116, 148, 245, 434, 661, 703, 738, 804
CviQI	GTAC	3 cut(s)	267, 319, 607
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
DraI	TTTAAA	3 cut(s)	241, 427, 571
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	681
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	557, 771
Eco57I	CTGAAG	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	773
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	4 cut(s)	44, 220, 590, 685
FaqI	GGGAC	2 cut(s)	85, 104
FatI	CATG	4 cut(s)	40, 216, 586, 681
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	5 cut(s)	149, 246, 489, 651, 654
FokI	GGATG	3 cut(s)	174, 374, 534
Fsp4HI	GCNGC	5 cut(s)	149, 246, 489, 651, 654
FspBI	CTAG	3 cut(s)	131, 513, 747
FspI	TGCGCA	1 cut(s)	492
GlaI	GCGC	2 cut(s)	492, 743
GluI	GCNGC	5 cut(s)	149, 246, 489, 651, 654
HapII	CCGG	2 cut(s)	526, 666
HhaI	GCGC	2 cut(s)	493, 744
Hin1II	CATG	4 cut(s)	44, 220, 590, 685
Hin6I	GCGC	2 cut(s)	491, 742
HinP1I	GCGC	2 cut(s)	491, 742
HincII	GTYRAC	2 cut(s)	206, 301
HindII	GTYRAC	2 cut(s)	206, 301
HinfI	GANTC	5 cut(s)	73, 449, 463, 780, 797
HpaII	CCGG	2 cut(s)	526, 666
HphI	GGTGA	3 cut(s)	19, 197, 223
Hpy166II	GTNNAC	4 cut(s)	60, 206, 301, 412
Hpy188I	TCNGA	2 cut(s)	561, 766
Hpy188III	TCNNGA	4 cut(s)	290, 386, 551, 790
Hpy8I	GTNNAC	4 cut(s)	60, 206, 301, 412
HpyAV	CCTTC	3 cut(s)	10, 397, 548
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	3 cut(s)	124, 208, 414
HpyCH4V	TGCA	5 cut(s)	100, 358, 473, 540, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 619
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	3 cut(s)	124, 208, 414
Hsp92II	CATG	4 cut(s)	44, 220, 590, 685
HspAI	GCGC	2 cut(s)	491, 742
KpnI	GGTACC	2 cut(s)	270, 322
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	1 cut(s)	634
Lsp1109I	GCAGC	5 cut(s)	135, 232, 475, 662, 665
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	3 cut(s)	131, 513, 747
MaeII	ACGT	3 cut(s)	124, 208, 414
MaeIII	GTNAC	2 cut(s)	133, 364
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	6 cut(s)	179, 220, 233, 431, 472, 587
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	6 cut(s)	105, 198, 284, 422, 428, 623
MlyI	GAGTC	2 cut(s)	67, 472
MnlI	CCTC	3 cut(s)	16, 81, 555
MseI	TTAA	5 cut(s)	240, 272, 426, 522, 570
MspI	CCGG	2 cut(s)	526, 666
MspR9I	CCNGG	2 cut(s)	666, 775
MvaI	CCWGG	1 cut(s)	775
MwoI	GCNNNNNNNGC	2 cut(s)	485, 619
NciI	CCSGG	1 cut(s)	666
NcoI	CCATGG	1 cut(s)	681
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	4 cut(s)	44, 220, 590, 685
NlaIV	GGNNCC	2 cut(s)	268, 320
NmuCI	GTSAC	1 cut(s)	364
NsbI	TGCGCA	1 cut(s)	492
PfeI	GAWTC	3 cut(s)	449, 780, 797
PkrI	GCNGC	5 cut(s)	150, 247, 490, 652, 655
PleI	GAGTC	2 cut(s)	67, 471
PpsI	GAGTC	2 cut(s)	67, 471
Psp6I	CCWGG	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	773
PspN4I	GGNNCC	2 cut(s)	268, 320
PspPI	GGNCC	2 cut(s)	557, 771
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PstI	CTGCAG	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	3 cut(s)	268, 320, 608
RsaNI	GTAC	3 cut(s)	267, 319, 607
SaqAI	TTAA	5 cut(s)	240, 272, 426, 522, 570
SatI	GCNGC	5 cut(s)	149, 246, 489, 651, 654
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	2 cut(s)	557, 771
SchI	GAGTC	2 cut(s)	67, 472
ScrFI	CCNGG	2 cut(s)	666, 775
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	2 cut(s)	557, 771
SmiI	ATTTAAAT	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
Sse9I	AATT	6 cut(s)	105, 198, 284, 422, 428, 623
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	3 cut(s)	131, 513, 747
StyD4I	CCNGG	2 cut(s)	664, 773
StyI	CCWWGG	1 cut(s)	681
SwaI	ATTTAAAT	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	3 cut(s)	127, 211, 417
TaqI	TCGA	2 cut(s)	14, 289
TasI	AATT	6 cut(s)	105, 198, 284, 422, 428, 623
TfiI	GAWTC	3 cut(s)	449, 780, 797
Tru1I	TTAA	5 cut(s)	240, 272, 426, 522, 570
Tru9I	TTAA	5 cut(s)	240, 272, 426, 522, 570
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	5 cut(s)	148, 245, 488, 650, 653
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	17, 297, 473, 772
TspGWI	ACGGA	1 cut(s)	621
TspRI	CASTG	1 cut(s)	542
VpaK11BI	GGWCC	2 cut(s)	557, 771
XapI	RAATTY	2 cut(s)	284, 422
XmiI	GTMKAC	1 cut(s)	59
XspI	CTAG	3 cut(s)	131, 513, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.