Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028798.1

Orthogroup ID

OG0008977

Physical Location & Seq

Genomic Coordinates Reverse (-)

264 .. 2115

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028798.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgaccatctcgtccttcttcatcagagcttcaagagctttccatggatacccttttgctccccagcttctactgctcggcactatcagtggtggaggtgttgtggcgtatgcagaatcacagtcagatgttggctctcctcctattgattctaatcagaatgaggttaagaaaaagaaagtggtggttcttgggacaggatgggctggtactagtttccttaagcatgtggatgcttcacattatgatgttcaggttgtatcacccagaaactattttgcgtttacccctttgttacctagtgtcacatgtgggacggttgaagcacgaagcatagtagaaccagtgcgtaaaattataaagaagagaagtggagagatcaaatattatgaagcagaatgtatcaagattgatgctgcaaataagaatgttcacctccgggctaatactgataacccattgataggaactcctgaattttccctggaatatgactacttgattgtagctataggagcacaagtaaacacgtttaacacccctggggtaacggagaactgtcattttctgaaggaagtagaagatgctcagaagattcgtaccagtgttatagattgctttgaaactgctgtacttccaggtcttagtgaagaggagcggaggaggaatcttcattttgtaattgttggagggggtcctactggggttgaatttgctgcagagctgcatgattatttccaagaagatttagtcaagttatatcccatggttaaggatcttgtgaaaataacattaatccaatcaggagatcatatcttgaacatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

275

Amino Acids

30.36

Weight (kDa)

5.92

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28220 AT4G28220
fragaria_vesca	FvH4_6g44592 FvH4_6g44593 FvH4_6g44690
malus_domestica	MD09G1096300.v1.1
prunus_persica	Prupe.3G231400_v2.0.a1
pyrus_communis	pycom09g02080
rosa_chinensis	RchiOBHm_Chr2g0161881
rosa_laevigata	RLG00000021305
rosa_multiflora	Rmu_co8378237.1_g000001 Rmu_sc0008565.1_g000008 Rmu_sc0018381.1_g000008 Rmu_sc0028798.1_g000001
rosa_rugosa	Rorug02G0492800 Rorug02G0492900 Rorug02G0493000
rosa_samantha	Rh2AG558800 Rh2BG572200 Rh2CG542600 Rh2DG582100
rosa_wichuraiana	Rw2G046260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AasI	GACNNNNNNGTC	1 cut(s)	10
AccBSI	CCGCTC	1 cut(s)	658
AciI	CCGC	1 cut(s)	658
AclWI	GGATC	1 cut(s)	783
AcsI	RAATTY	2 cut(s)	476, 710
AcuI	CTGAAG	1 cut(s)	590
AfaI	GTAC	3 cut(s)	211, 601, 633
AfiI	CCNNNNNNNGG	1 cut(s)	464
AflII	CTTAAG	1 cut(s)	221
AflIII	ACRYGT	3 cut(s)	308, 528, 822
AgsI	TTSAA	5 cut(s)	33, 323, 623, 710, 820
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	3 cut(s)	483, 541, 637
AluBI	AGCT	5 cut(s)	29, 38, 67, 509, 724
AluI	AGCT	5 cut(s)	29, 38, 67, 509, 724
Alw21I	GWGCWC	1 cut(s)	520
AlwI	GGATC	1 cut(s)	783
ApeKI	GCWGC	3 cut(s)	416, 716, 724
ApoI	RAATTY	2 cut(s)	476, 710
AseI	ATTAAT	1 cut(s)	794
AspS9I	GGNCC	1 cut(s)	695
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	255, 425
AvaII	GGWCC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	3 cut(s)	403, 703, 711
BccI	CCATC	2 cut(s)	14, 195
BciT130I	CCWGG	3 cut(s)	485, 543, 639
BciVI	GTATCC	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	440
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	213, 300
BfmI	CTRYAG	2 cut(s)	510, 717
BfrI	CTTAAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	417, 717, 725
BlsI	GCNGC	3 cut(s)	418, 718, 726
Bme1390I	CCNGG	4 cut(s)	440, 485, 543, 639
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	4 cut(s)	440, 485, 543, 639
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	3 cut(s)	223, 403, 574
BmuI	ACTGGG	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	5 cut(s)	43, 483, 541, 542, 765
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse1I	ACTGG	3 cut(s)	344, 603, 706
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	3 cut(s)	485, 543, 639
BseDI	CCNNGG	5 cut(s)	43, 483, 541, 542, 765
BseGI	GGATG	2 cut(s)	206, 238
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	3 cut(s)	344, 603, 706
BseRI	GAGGAG	3 cut(s)	129, 668, 676
BseXI	GCAGC	3 cut(s)	403, 703, 711
BseYI	CCCAGC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	439
BslFI	GGGAC	2 cut(s)	208, 328
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmFI	GGGAC	2 cut(s)	208, 328
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	3 cut(s)	378, 775, 808
Bsp19I	CCATGG	2 cut(s)	43, 765
BspACI	CCGC	1 cut(s)	658
BspCNI	CTCAG	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	696
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	1 cut(s)	783
BspTI	CTTAAG	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	658
BsrI	ACTGG	3 cut(s)	344, 603, 706
BssECI	CCNNGG	5 cut(s)	43, 483, 541, 542, 765
BssMI	GATC	3 cut(s)	378, 775, 808
BssT1I	CCWWGG	2 cut(s)	43, 765
Bst2UI	CCWGG	3 cut(s)	485, 543, 639
Bst4CI	ACNGT	3 cut(s)	123, 319, 560
Bst6I	CTCTTC	2 cut(s)	359, 645
BstAFI	CTTAAG	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	588, 644
BstDSI	CCRYGG	2 cut(s)	43, 765
BstF5I	GGATG	2 cut(s)	206, 238
BstKTI	GATC	3 cut(s)	381, 778, 811
BstMBI	GATC	3 cut(s)	378, 775, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 73, 515
BstNI	CCWGG	3 cut(s)	485, 543, 639
BstNSI	RCATGY	3 cut(s)	230, 312, 826
BstSCI	CCNGG	4 cut(s)	438, 483, 541, 637
BstSFI	CTRYAG	2 cut(s)	510, 717
BstV1I	GCAGC	3 cut(s)	403, 703, 711
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuI	GTATCC	1 cut(s)	41
BtgI	CCRYGG	2 cut(s)	43, 765
BtsCI	GGATG	2 cut(s)	206, 238
BtsIMutI	CAGTG	3 cut(s)	94, 351, 610
Cfr13I	GGNCC	1 cut(s)	695
Csp6I	GTAC	3 cut(s)	210, 600, 632
CviAII	CATG	6 cut(s)	44, 227, 309, 728, 766, 823
CviJI	RGCY	8 cut(s)	29, 38, 67, 135, 206, 443, 509, 724
CviKI_1	RGCY	8 cut(s)	29, 38, 67, 135, 206, 443, 509, 724
CviQI	GTAC	3 cut(s)	210, 600, 632
DdeI	CTNAG	2 cut(s)	588, 644
DpnI	GATC	3 cut(s)	380, 777, 810
DpnII	GATC	3 cut(s)	378, 775, 808
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	359, 645
EarI	CTCTTC	2 cut(s)	359, 645
Eco130I	CCWWGG	2 cut(s)	43, 765
Eco47I	GGWCC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	590
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRII	CCWGG	3 cut(s)	483, 541, 637
EcoT14I	CCWWGG	2 cut(s)	43, 765
ErhI	CCWWGG	2 cut(s)	43, 765
FaeI	CATG	6 cut(s)	47, 230, 312, 731, 769, 826
FaqI	GGGAC	2 cut(s)	208, 328
FatI	CATG	6 cut(s)	43, 226, 308, 727, 765, 822
Fnu4HI	GCNGC	3 cut(s)	417, 717, 725
FokI	GGATG	2 cut(s)	213, 245
Fsp4HI	GCNGC	3 cut(s)	417, 717, 725
FspBI	CTAG	2 cut(s)	213, 300
GluI	GCNGC	3 cut(s)	417, 717, 725
GsaI	CCCAGC	1 cut(s)	67
HapII	CCGG	1 cut(s)	439
Hin1II	CATG	6 cut(s)	47, 230, 312, 731, 769, 826
HinfI	GANTC	4 cut(s)	116, 149, 595, 667
HpaII	CCGG	1 cut(s)	439
HphI	GGTGA	2 cut(s)	255, 425
Hpy166II	GTNNAC	3 cut(s)	285, 433, 526
Hpy188I	TCNGA	5 cut(s)	26, 127, 159, 570, 591
Hpy188III	TCNNGA	5 cut(s)	33, 406, 473, 804, 817
Hpy8I	GTNNAC	3 cut(s)	285, 433, 526
HpyAV	CCTTC	2 cut(s)	25, 565
HpyCH4III	ACNGT	3 cut(s)	123, 319, 560
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	4 cut(s)	113, 419, 719, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 73, 515
HpyF3I	CTNAG	2 cut(s)	588, 644
HpySE526I	ACGT	1 cut(s)	530
Hsp92II	CATG	6 cut(s)	47, 230, 312, 731, 769, 826
Kzo9I	GATC	3 cut(s)	378, 775, 808
LmnI	GCTCC	3 cut(s)	64, 515, 655
Lsp1109I	GCAGC	3 cut(s)	403, 703, 711
LweI	GCATC	3 cut(s)	223, 403, 574
MaeI	CTAG	2 cut(s)	213, 300
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	3 cut(s)	294, 304, 547
MalI	GATC	3 cut(s)	380, 777, 810
MbiI	CCGCTC	1 cut(s)	658
MboI	GATC	3 cut(s)	378, 775, 808
MboII	GAAGA	7 cut(s)	10, 376, 593, 604, 662, 662, 755
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	4 cut(s)	354, 476, 681, 710
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	8 cut(s)	89, 150, 157, 446, 646, 654, 657, 683
MseI	TTAA	5 cut(s)	168, 222, 534, 771, 794
MslI	CAYNNNNRTG	2 cut(s)	231, 246
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	4 cut(s)	440, 485, 543, 639
MvaI	CCWGG	3 cut(s)	485, 543, 639
MwoI	GCNNNNNNNGC	3 cut(s)	35, 73, 515
NciI	CCSGG	1 cut(s)	440
NcoI	CCATGG	2 cut(s)	43, 765
NdeII	GATC	3 cut(s)	378, 775, 808
NlaIII	CATG	6 cut(s)	47, 230, 312, 731, 769, 826
NlaIV	GGNNCC	1 cut(s)	696
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	3 cut(s)	230, 312, 826
PasI	CCCWGGG	1 cut(s)	542
PciI	ACATGT	2 cut(s)	308, 822
PfeI	GAWTC	4 cut(s)	116, 149, 595, 667
PkrI	GCNGC	3 cut(s)	418, 718, 726
PpuMI	RGGWCCY	1 cut(s)	695
PscI	ACATGT	2 cut(s)	308, 822
PshBI	ATTAAT	1 cut(s)	794
PsiI	TTATAA	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	3 cut(s)	483, 541, 637
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	3 cut(s)	483, 541, 637
PspN4I	GGNNCC	1 cut(s)	696
PspPI	GGNCC	1 cut(s)	695
PspPPI	RGGWCCY	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	3 cut(s)	211, 601, 633
RsaNI	GTAC	3 cut(s)	210, 600, 632
RseI	CAYNNNNRTG	2 cut(s)	231, 246
SaqAI	TTAA	5 cut(s)	168, 222, 534, 771, 794
SatI	GCNGC	3 cut(s)	417, 717, 725
Sau3AI	GATC	3 cut(s)	378, 775, 808
Sau96I	GGNCC	1 cut(s)	695
ScrFI	CCNGG	4 cut(s)	440, 485, 543, 639
SduI	GDGCHC	1 cut(s)	520
SfaNI	GCATC	3 cut(s)	223, 403, 574
SfcI	CTRYAG	2 cut(s)	510, 717
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	2 cut(s)	231, 246
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	4 cut(s)	354, 476, 681, 710
SsiI	CCGC	1 cut(s)	658
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	2 cut(s)	213, 300
StyD4I	CCNGG	4 cut(s)	438, 483, 541, 637
StyI	CCWWGG	2 cut(s)	43, 765
TaaI	ACNGT	3 cut(s)	123, 319, 560
TaiI	ACGT	1 cut(s)	533
TasI	AATT	4 cut(s)	354, 476, 681, 710
TatI	WGTACW	1 cut(s)	631
TfiI	GAWTC	4 cut(s)	116, 149, 595, 667
Tru1I	TTAA	5 cut(s)	168, 222, 534, 771, 794
Tru9I	TTAA	5 cut(s)	168, 222, 534, 771, 794
TscAI	CASTG	3 cut(s)	94, 351, 610
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	3 cut(s)	416, 716, 724
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	3 cut(s)	10, 405, 662
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	3 cut(s)	94, 351, 610
Vha464I	CTTAAG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	794
XapI	RAATTY	2 cut(s)	476, 710
XceI	RCATGY	3 cut(s)	230, 312, 826
XspI	CTAG	2 cut(s)	213, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.