Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008977

Physical Location & Seq

Genomic Coordinates Reverse (-)

78883163 .. 78889512

Gene Structure 6350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG572200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGACCATCTCGTCCTTCTTCATCAGAGCTTCAAGAGCTTTCCATGGATACCCTTTTGCTCCCCAGCTTCTACTGCTCGGGACTATCAGTGGTGGAGGTGTTGTGGCGTATGCAGAATCACAGTCAGATGTTGGCTCTCCTCCTATTGATTCTAATCAGAATGAGGTTAAGAAAAAGAAAGTGGTGGTTCTTGGGACAGGATGGGCTGGTACTAGTTTCCTTAAGCATGTGGATGCTTCACATTATGATGTTCAGGTTGTATCACCCAGAAACTATTTTGCGTTTACCCCTTTGTTACCTAGTGTCACATGTGGGACGGTTGAAGCACGAAGCATAGTAGAACCAGTGCGTAAAATTATAAAGAAGAGAAGTGGAGAGATCAAATATTATGAAGCAGAATGTATCAAGATTGATGCTGCAAATAAGAATGTTCACCTCCGGGCTAATACTGATAACCCATTGATAGGAACTCCTGAATTTTCCCTGGAATATGACTACTTGATTGTAGCTATAGGAGCACAAGTAAACACGTTTAACACCCCTGGGGTAACGGAGAACTGTCATTTTCTGAAGGAAGTAGAAGATGCTCAGAAGATTCGTACCAGTGTTATAGATTGCTTTGAAACTGCTGTACTTCCAGGTCTTAGTGAAGAGGAGCGGAGGAGGAATCTTCATTTTGTAATTGTTGGAGGGGGTCCTACTGGGGTTGAATTTGCTGCAGAGCTGCATGATTATTTCCAAGAAGATTTAGTCAAGTTATATCCCATGGTTAAGGATCTTGTGAAAATAACATTAATCCAATCAGGAGATCATATCTTGAACATGTTTGATGAAAGAATTAGTAATTTTGCTGAGACCAAATTTCAAAGAGATGGTATTGATGTTCAAACAGGATGCCGGGTTGTCAGTGTTTCAGACAAGGAAATCAAAGTGAAAGTGAAATCAAAGGGAGAGGTCTGCTCTGTTCCACATGGATTGGTGGTGTGGTCTACCGGCGTTGGGACTCGTCCAGTTGTGAGAGACTTTATGGAACAAATTGGACAGGCTAATAGACGTGTTCTAGTAACAGATGAATGGTTGCGTGTAAAGGGTTGTGATGATGTGTATGCCATTGGTGATTGCGCTACAATTGATCAACGTAAAATCATGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

384

Amino Acids

42.56

Weight (kDa)

6.17

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	59 - 381	1.7e-56	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	225 - 313	3.6e-11	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28220 AT4G28220
fragaria_vesca	FvH4_6g44592 FvH4_6g44593 FvH4_6g44690
malus_domestica	MD09G1096300.v1.1
prunus_persica	Prupe.3G231400_v2.0.a1
pyrus_communis	pycom09g02080
rosa_chinensis	RchiOBHm_Chr2g0161881
rosa_laevigata	RLG00000021305
rosa_multiflora	Rmu_co8378237.1_g000001 Rmu_sc0008565.1_g000008 Rmu_sc0018381.1_g000008 Rmu_sc0028798.1_g000001
rosa_rugosa	Rorug02G0492800 Rorug02G0492900 Rorug02G0493000
rosa_samantha	Rh2AG558800 Rh2BG572200 Rh2CG542600 Rh2DG582100
rosa_wichuraiana	Rw2G046260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AasI	GACNNNNNNGTC	1 cut(s)	10
AccBSI	CCGCTC	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	989
AciI	CCGC	1 cut(s)	658
AclWI	GGATC	1 cut(s)	783
AcsI	RAATTY	3 cut(s)	476, 710, 860
AcuI	CTGAAG	1 cut(s)	590
AfaI	GTAC	3 cut(s)	211, 601, 633
AfiI	CCNNNNNNNGG	2 cut(s)	464, 999
AflII	CTTAAG	1 cut(s)	221
AflIII	ACRYGT	4 cut(s)	308, 528, 822, 1054
AgsI	TTSAA	7 cut(s)	33, 323, 623, 710, 820, 866, 887
AhlI	ACTAGT	1 cut(s)	212
AjiI	CACGTC	1 cut(s)	1055
AjnI	CCWGG	3 cut(s)	483, 541, 637
AluBI	AGCT	5 cut(s)	29, 38, 67, 509, 724
AluI	AGCT	5 cut(s)	29, 38, 67, 509, 724
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	2 cut(s)	848, 1014
AlwI	GGATC	1 cut(s)	783
Ama87I	CYCGRG	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	416, 716, 724
ApoI	RAATTY	3 cut(s)	476, 710, 860
AseI	ATTAAT	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	1124
AspS9I	GGNCC	1 cut(s)	695
AsuC2I	CCSGG	2 cut(s)	440, 899
AsuHPI	GGTGA	3 cut(s)	255, 425, 1127
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	3 cut(s)	403, 703, 711
BccI	CCATC	3 cut(s)	14, 195, 866
BciT130I	CCWGG	3 cut(s)	485, 543, 639
BciVI	GTATCC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	1132
BcnI	CCSGG	2 cut(s)	440, 899
BcoDI	GTCTC	2 cut(s)	848, 1014
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	3 cut(s)	213, 300, 1061
BfmI	CTRYAG	2 cut(s)	510, 717
BfrI	CTTAAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	417, 717, 725
BlsI	GCNGC	3 cut(s)	418, 718, 726
Bme1390I	CCNGG	5 cut(s)	440, 485, 543, 639, 899
Bme18I	GGWCC	1 cut(s)	695
BmeT110I	CYCGRG	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	1055
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	5 cut(s)	440, 485, 543, 639, 899
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	4 cut(s)	223, 403, 574, 884
BmuI	ACTGGG	1 cut(s)	711
BplI	GAGNNNNNCTC	2 cut(s)	944, 976
BpuMI	CCSGG	2 cut(s)	440, 899
BsaBI	GATNNNNATC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	5 cut(s)	43, 483, 541, 542, 765
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 507, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 999
Bse118I	RCCGGY	1 cut(s)	992
Bse1I	ACTGG	4 cut(s)	344, 603, 706, 1010
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	3 cut(s)	485, 543, 639
BseDI	CCNNGG	5 cut(s)	43, 483, 541, 542, 765
BseGI	GGATG	3 cut(s)	206, 238, 899
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	464, 999
BseMII	CTCAG	2 cut(s)	602, 843
BseNI	ACTGG	4 cut(s)	344, 603, 706, 1010
BseRI	GAGGAG	3 cut(s)	129, 668, 676
BseXI	GCAGC	3 cut(s)	403, 703, 711
BseYI	CCCAGC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	439, 898, 993
BslFI	GGGAC	4 cut(s)	94, 208, 328, 1015
BslI	CCNNNNNNNGG	2 cut(s)	464, 999
BsmAI	GTCTC	2 cut(s)	848, 1014
BsmFI	GGGAC	4 cut(s)	94, 208, 328, 1015
Bso31I	GGTCTC	1 cut(s)	848
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	4 cut(s)	378, 775, 808, 1132
Bsp19I	CCATGG	2 cut(s)	43, 765
BspACI	CCGC	1 cut(s)	658
BspCNI	CTCAG	2 cut(s)	601, 844
BspLI	GGNNCC	1 cut(s)	696
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	1 cut(s)	783
BspTI	CTTAAG	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	848
BsrBI	CCGCTC	1 cut(s)	658
BsrFI	RCCGGY	1 cut(s)	992
BsrI	ACTGG	4 cut(s)	344, 603, 706, 1010
BssAI	RCCGGY	1 cut(s)	992
BssECI	CCNNGG	5 cut(s)	43, 483, 541, 542, 765
BssMI	GATC	4 cut(s)	378, 775, 808, 1132
BssT1I	CCWWGG	2 cut(s)	43, 765
Bst2UI	CCWGG	3 cut(s)	485, 543, 639
Bst4CI	ACNGT	3 cut(s)	123, 319, 560
Bst6I	CTCTTC	2 cut(s)	359, 645
BstAFI	CTTAAG	1 cut(s)	221
BstDEI	CTNAG	3 cut(s)	588, 644, 852
BstDSI	CCRYGG	2 cut(s)	43, 765
BstF5I	GGATG	3 cut(s)	206, 238, 899
BstHHI	GCGC	1 cut(s)	1124
BstKTI	GATC	4 cut(s)	381, 778, 811, 1135
BstMAI	GTCTC	2 cut(s)	848, 1014
BstMBI	GATC	4 cut(s)	378, 775, 808, 1132
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 73, 515
BstNI	CCWGG	3 cut(s)	485, 543, 639
BstNSI	RCATGY	3 cut(s)	230, 312, 826
BstSCI	CCNGG	5 cut(s)	438, 483, 541, 637, 897
BstSFI	CTRYAG	2 cut(s)	510, 717
BstV1I	GCAGC	3 cut(s)	403, 703, 711
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuI	GTATCC	1 cut(s)	41
BtgI	CCRYGG	2 cut(s)	43, 765
BtrI	CACGTC	1 cut(s)	1055
BtsCI	GGATG	3 cut(s)	206, 238, 899
BtsIMutI	CAGTG	4 cut(s)	94, 351, 610, 913
CfoI	GCGC	1 cut(s)	1124
Cfr10I	RCCGGY	1 cut(s)	992
Cfr13I	GGNCC	1 cut(s)	695
Csp6I	GTAC	3 cut(s)	210, 600, 632
CspCI	CAANNNNNGTGG	2 cut(s)	957, 992
CviAII	CATG	8 cut(s)	44, 227, 309, 728, 766, 823, 971, 1147
CviJI	RGCY	9 cut(s)	29, 38, 67, 135, 206, 443, 509, 724, 1046
CviKI_1	RGCY	9 cut(s)	29, 38, 67, 135, 206, 443, 509, 724, 1046
CviQI	GTAC	3 cut(s)	210, 600, 632
DdeI	CTNAG	3 cut(s)	588, 644, 852
DpnI	GATC	4 cut(s)	380, 777, 810, 1134
DpnII	GATC	4 cut(s)	378, 775, 808, 1132
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	359, 645
EarI	CTCTTC	2 cut(s)	359, 645
Eco130I	CCWWGG	2 cut(s)	43, 765
Eco31I	GGTCTC	1 cut(s)	848
Eco47I	GGWCC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	590
Eco88I	CYCGRG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRII	CCWGG	3 cut(s)	483, 541, 637
EcoT14I	CCWWGG	2 cut(s)	43, 765
ErhI	CCWWGG	2 cut(s)	43, 765
FaeI	CATG	8 cut(s)	47, 230, 312, 731, 769, 826, 974, 1150
FaqI	GGGAC	4 cut(s)	94, 208, 328, 1015
FatI	CATG	8 cut(s)	43, 226, 308, 727, 765, 822, 970, 1146
FbaI	TGATCA	1 cut(s)	1132
FblI	GTMKAC	1 cut(s)	989
Fnu4HI	GCNGC	3 cut(s)	417, 717, 725
FokI	GGATG	3 cut(s)	213, 245, 906
Fsp4HI	GCNGC	3 cut(s)	417, 717, 725
FspBI	CTAG	3 cut(s)	213, 300, 1061
GlaI	GCGC	1 cut(s)	1123
GluI	GCNGC	3 cut(s)	417, 717, 725
GsaI	CCCAGC	1 cut(s)	67
HapII	CCGG	3 cut(s)	439, 898, 993
HhaI	GCGC	1 cut(s)	1124
Hin1II	CATG	8 cut(s)	47, 230, 312, 731, 769, 826, 974, 1150
Hin6I	GCGC	1 cut(s)	1122
HinP1I	GCGC	1 cut(s)	1122
HinfI	GANTC	5 cut(s)	116, 149, 595, 667, 1003
HpaII	CCGG	3 cut(s)	439, 898, 993
HphI	GGTGA	3 cut(s)	255, 425, 1127
Hpy166II	GTNNAC	4 cut(s)	285, 433, 526, 990
Hpy188I	TCNGA	6 cut(s)	26, 127, 159, 570, 591, 916
Hpy188III	TCNNGA	6 cut(s)	33, 79, 406, 473, 804, 817
Hpy8I	GTNNAC	4 cut(s)	285, 433, 526, 990
HpyAV	CCTTC	2 cut(s)	25, 565
HpyCH4III	ACNGT	3 cut(s)	123, 319, 560
HpyCH4IV	ACGT	3 cut(s)	530, 1054, 1138
HpyCH4V	TGCA	4 cut(s)	113, 419, 719, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 73, 515
HpyF3I	CTNAG	3 cut(s)	588, 644, 852
HpySE526I	ACGT	3 cut(s)	530, 1054, 1138
Hsp92II	CATG	8 cut(s)	47, 230, 312, 731, 769, 826, 974, 1150
HspAI	GCGC	1 cut(s)	1122
Ksp22I	TGATCA	1 cut(s)	1132
Kzo9I	GATC	4 cut(s)	378, 775, 808, 1132
LmnI	GCTCC	3 cut(s)	64, 515, 655
Lsp1109I	GCAGC	3 cut(s)	403, 703, 711
LweI	GCATC	4 cut(s)	223, 403, 574, 884
MaeI	CTAG	3 cut(s)	213, 300, 1061
MaeII	ACGT	3 cut(s)	530, 1054, 1138
MaeIII	GTNAC	4 cut(s)	294, 304, 547, 1063
MalI	GATC	4 cut(s)	380, 777, 810, 1134
MbiI	CCGCTC	1 cut(s)	658
MboI	GATC	4 cut(s)	378, 775, 808, 1132
MboII	GAAGA	7 cut(s)	10, 376, 593, 604, 662, 662, 755
MfeI	CAATTG	1 cut(s)	1128
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	9 cut(s)	354, 476, 681, 710, 837, 844, 860, 1035, 1128
MlyI	GAGTC	1 cut(s)	997
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	9 cut(s)	89, 150, 157, 446, 646, 654, 657, 683, 946
MseI	TTAA	5 cut(s)	168, 222, 534, 771, 794
MslI	CAYNNNNRTG	2 cut(s)	231, 246
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	3 cut(s)	439, 898, 993
MspR9I	CCNGG	5 cut(s)	440, 485, 543, 639, 899
MunI	CAATTG	1 cut(s)	1128
MvaI	CCWGG	3 cut(s)	485, 543, 639
MwoI	GCNNNNNNNGC	3 cut(s)	35, 73, 515
NciI	CCSGG	2 cut(s)	440, 899
NcoI	CCATGG	2 cut(s)	43, 765
NdeII	GATC	4 cut(s)	378, 775, 808, 1132
NlaIII	CATG	8 cut(s)	47, 230, 312, 731, 769, 826, 974, 1150
NlaIV	GGNNCC	1 cut(s)	696
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	3 cut(s)	230, 312, 826
PasI	CCCWGGG	1 cut(s)	542
PciI	ACATGT	2 cut(s)	308, 822
PfeI	GAWTC	4 cut(s)	116, 149, 595, 667
PkrI	GCNGC	3 cut(s)	418, 718, 726
PleI	GAGTC	1 cut(s)	997
PpsI	GAGTC	1 cut(s)	997
PpuMI	RGGWCCY	1 cut(s)	695
PscI	ACATGT	2 cut(s)	308, 822
PshBI	ATTAAT	1 cut(s)	794
PsiI	TTATAA	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	3 cut(s)	483, 541, 637
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	3 cut(s)	483, 541, 637
PspN4I	GGNNCC	1 cut(s)	696
PspPI	GGNCC	1 cut(s)	695
PspPPI	RGGWCCY	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	3 cut(s)	211, 601, 633
RsaNI	GTAC	3 cut(s)	210, 600, 632
RseI	CAYNNNNRTG	2 cut(s)	231, 246
SaqAI	TTAA	5 cut(s)	168, 222, 534, 771, 794
SatI	GCNGC	3 cut(s)	417, 717, 725
Sau3AI	GATC	4 cut(s)	378, 775, 808, 1132
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	1 cut(s)	997
ScrFI	CCNGG	5 cut(s)	440, 485, 543, 639, 899
SduI	GDGCHC	1 cut(s)	520
SfaNI	GCATC	4 cut(s)	223, 403, 574, 884
SfcI	CTRYAG	2 cut(s)	510, 717
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	2 cut(s)	231, 246
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	9 cut(s)	354, 476, 681, 710, 837, 844, 860, 1035, 1128
SsiI	CCGC	1 cut(s)	658
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	3 cut(s)	213, 300, 1061
StyD4I	CCNGG	5 cut(s)	438, 483, 541, 637, 897
StyI	CCWWGG	2 cut(s)	43, 765
TaaI	ACNGT	3 cut(s)	123, 319, 560
TaiI	ACGT	3 cut(s)	533, 1057, 1141
TasI	AATT	9 cut(s)	354, 476, 681, 710, 837, 844, 860, 1035, 1128
TatI	WGTACW	1 cut(s)	631
TfiI	GAWTC	4 cut(s)	116, 149, 595, 667
Tru1I	TTAA	5 cut(s)	168, 222, 534, 771, 794
Tru9I	TTAA	5 cut(s)	168, 222, 534, 771, 794
TscAI	CASTG	4 cut(s)	94, 351, 610, 913
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	3 cut(s)	416, 716, 724
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	10, 405, 662, 846, 1086
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	4 cut(s)	94, 351, 610, 913
Vha464I	CTTAAG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	794
XapI	RAATTY	3 cut(s)	476, 710, 860
XceI	RCATGY	3 cut(s)	230, 312, 826
XmiI	GTMKAC	1 cut(s)	989
XspI	CTAG	3 cut(s)	213, 300, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.