Rmu_sc0008565.1_g000008

External alternative NAD(P)H-ubiquinone oxidoreductase B1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008565.1
Physical Location & Seq
Forward (+)
25417 .. 29838
4422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008565.1_g000008.1.cds

Sequence Viewer

Length: 1443 bp
atgacctcaccgcgcgctgcacctcttttctaccgtcatctccccaatcaactccagccctcactgtcgtccaataggcatgtttcatcgccagccaagacccaccgatcatcgtccataaattcacccctgaaaagcactaatctttctgggcatctgatgtttctcgtcaaaaacaaaacccagaagaagaggataaataaggaattaagaaggagaagtgatgaaggagatgaagaacgagaaggagaagaaaactgtcattttctgaaggaagtagaagatgctcagaagattcgtaccagtgttatagattgctttgaaactgctgtacttccaggtcttagtgaagaggagcggaggaggaatcttcattttgtaattgttggagggggtcctactggggttgaatttgctgcagagctgcatgattatttccaagaagatttagtcaagttatatcccatggttaaggatcttgtgaaaataacattaatccaatcaggagatcatatcttgaacatgtttgatgaaagaattagtaattttgctgagaccaaatttcaaagagatggtattgatgttcaaacaggatgccgggttgtcagtgtttcagacaaggaaatcaaagtgaaagtgaaatcaaagggagaggtctgctctgttccacatggattggtggtgtggtctaccggcgttgggactcgtccagttgtgagagactttatggaacaaattggacaggctaatagacgtgttctagtaactgatgaatggttgcgtgtaaagggttgtgatgatgtgtatgccattggtgattgcgctacaattgatcaacgtaaaatcatggaagatatcgtggccatatttgcagctgcggacacagacaactctggtaccttaacagttgctgaattccgagatgtagttgacgacataatcattaggtatccccaagtggaacagtatttaaaaagcaagcatctgcaagatgtgacagatctattgaaagattctgaggggaatgataggaaggaagtgaatattgaagaatttaaattagccctctctctagtggattcacagaggaagagtctgcctgcaactgcacaggttgctgctcagcagggtacatatctttgtaattgctttaaccgtagagagcagtgtgaagcaattcctgaaggtcctcgacgttttagaggttctggacaacatcacttccttcccttcaggtacaagcatttcgggcaatttgctccattggggggtgaggaagcagcagcagagctgcctggggactgggtttccacgggtcacagcactcaatggctctggtattctgtatatgcaagcaagcaagtgagctggcgtactagggtcctagtggtatctgattggaccagaagatttatttttgggagagattcaagccgtatttaa

Protein Analysis

480

Amino Acids

54.52

Weight (kDa)

6.93

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 896
AccB1I GGYRCC 1 cut(s) 896
AccBSI CCGCTC 1 cut(s) 358
AccI GTMKAC 1 cut(s) 689
AccII CGCG 2 cut(s) 13, 15
AciI CCGC 3 cut(s) 11, 358, 878
AclWI GGATC 1 cut(s) 483
AcoI YGGCCR 1 cut(s) 861
AcsI RAATTY 5 cut(s) 121, 410, 560, 914, 1052
AcuI CTGAAG 3 cut(s) 290, 1203, 1216
AfaI GTAC 6 cut(s) 301, 333, 898, 1132, 1238, 1375
AfiI CCNNNNNNNGG 2 cut(s) 699, 1268
AflIII ACRYGT 2 cut(s) 522, 754
AgsI TTSAA 8 cut(s) 323, 410, 520, 566, 587, 1009, 1049, 1431
AjiI CACGTC 1 cut(s) 755
AjnI CCWGG 2 cut(s) 337, 1294
AluBI AGCT 4 cut(s) 424, 875, 1291, 1368
AluI AGCT 4 cut(s) 424, 875, 1291, 1368
Alw26I GTCTC 2 cut(s) 548, 714
AlwI GGATC 1 cut(s) 483
AlwNI CAGNNNCTG 1 cut(s) 911
AoxI GGCC 1 cut(s) 861
ApeKI GCWGC 9 cut(s) 17, 416, 424, 872, 875, 1118, 1280, 1283, 1291
ApoI RAATTY 5 cut(s) 121, 410, 560, 914, 1052
AseI ATTAAT 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 1176
Asp718I GGTACC 1 cut(s) 896
AspLEI GCGC 3 cut(s) 15, 17, 824
AspS9I GGNCC 4 cut(s) 395, 1187, 1381, 1401
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 3 cut(s) 117, 827, 1283
AvaII GGWCC 4 cut(s) 395, 1187, 1381, 1401
BaeI ACNNNNGTAYC 2 cut(s) 880, 913
BalI TGGCCA 1 cut(s) 863
BanI GGYRCC 1 cut(s) 896
BbvI GCAGC 9 cut(s) 4, 403, 411, 862, 884, 1105, 1278, 1292, 1295
BccI CCATC 1 cut(s) 566
BceAI ACGGC 1 cut(s) 1419
BciT130I CCWGG 2 cut(s) 339, 1296
BciVI GTATCC 1 cut(s) 960
BclI TGATCA 1 cut(s) 832
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 2 cut(s) 548, 714
BfaI CTAG 4 cut(s) 761, 1073, 1377, 1385
BfmI CTRYAG 1 cut(s) 417
BfuI GTATCC 1 cut(s) 960
BglII AGATCT 1 cut(s) 1000
BisI GCNGC 9 cut(s) 18, 417, 425, 873, 876, 1119, 1281, 1284, 1292
BlpI GCTNAGC 1 cut(s) 1122
BlsI GCNGC 9 cut(s) 19, 418, 426, 874, 877, 1120, 1282, 1285, 1293
Bme1390I CCNGG 3 cut(s) 339, 599, 1296
Bme18I GGWCC 4 cut(s) 395, 1187, 1381, 1401
BmgBI CACGTC 1 cut(s) 755
BmgT120I GGNCC 4 cut(s) 395, 1187, 1381, 1401
BmiI GGNNCC 3 cut(s) 396, 898, 1382
BmrFI CCNGG 3 cut(s) 339, 599, 1296
BmrI ACTGGG 2 cut(s) 411, 1312
BmsI GCATC 4 cut(s) 163, 274, 584, 991
BmuI ACTGGG 2 cut(s) 411, 1312
BplI GAGNNNNNCTC 2 cut(s) 644, 676
BpmI CTGGAG 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 1122
BpuMI CCSGG 1 cut(s) 599
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 465, 1295, 1311
Bsc4I CCNNNNNNNGG 2 cut(s) 699, 1268
Bse118I RCCGGY 1 cut(s) 692
Bse1I ACTGG 4 cut(s) 303, 406, 710, 1307
BseBI CCWGG 2 cut(s) 339, 1296
BseDI CCNNGG 3 cut(s) 465, 1295, 1311
BseGI GGATG 1 cut(s) 599
BseLI CCNNNNNNNGG 2 cut(s) 699, 1268
BseMII CTCAG 4 cut(s) 302, 543, 1008, 1136
BseNI ACTGG 4 cut(s) 303, 406, 710, 1307
BsePI GCGCGC 1 cut(s) 13
BseRI GAGGAG 2 cut(s) 368, 376
BseXI GCAGC 9 cut(s) 4, 403, 411, 862, 884, 1105, 1278, 1292, 1295
BsgI GTGCAG 1 cut(s) 1092
Bsh1236I CGCG 2 cut(s) 13, 15
BshFI GGCC 1 cut(s) 863
BshNI GGYRCC 1 cut(s) 896
BsiSI CCGG 2 cut(s) 598, 693
BslFI GGGAC 2 cut(s) 715, 1313
BslI CCNNNNNNNGG 2 cut(s) 699, 1268
BsmAI GTCTC 2 cut(s) 548, 714
BsmFI GGGAC 2 cut(s) 715, 1313
BsnI GGCC 1 cut(s) 863
Bso31I GGTCTC 1 cut(s) 548
Bsp143I GATC 5 cut(s) 107, 475, 508, 832, 1000
Bsp1720I GCTNAGC 1 cut(s) 1122
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 3 cut(s) 11, 358, 878
BspANI GGCC 1 cut(s) 863
BspCNI CTCAG 4 cut(s) 301, 544, 1009, 1135
BspFNI CGCG 2 cut(s) 13, 15
BspLI GGNNCC 3 cut(s) 396, 898, 1382
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 896
BspTNI GGTCTC 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 692
BsrI ACTGG 4 cut(s) 303, 406, 710, 1307
BssAI RCCGGY 1 cut(s) 692
BssECI CCNNGG 3 cut(s) 465, 1295, 1311
BssHII GCGCGC 1 cut(s) 13
BssMI GATC 5 cut(s) 107, 475, 508, 832, 1000
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 339, 1296
Bst4CI ACNGT 6 cut(s) 35, 66, 260, 907, 966, 1157
Bst6I CTCTTC 3 cut(s) 185, 345, 1085
BstAPI GCANNNNNTGC 1 cut(s) 1115
BstC8I GCNNGC 7 cut(s) 15, 93, 980, 1101, 1354, 1358, 1370
BstDEI CTNAG 5 cut(s) 288, 344, 552, 1017, 1122
BstDSI CCRYGG 2 cut(s) 465, 1311
BstF5I GGATG 1 cut(s) 599
BstFNI CGCG 2 cut(s) 13, 15
BstHHI GCGC 3 cut(s) 15, 17, 824
BstKTI GATC 5 cut(s) 110, 478, 511, 835, 1003
BstMAI GTCTC 2 cut(s) 548, 714
BstMBI GATC 5 cut(s) 107, 475, 508, 832, 1000
BstMWI GCNNNNNNNGC 3 cut(s) 869, 1115, 1249
BstNI CCWGG 2 cut(s) 339, 1296
BstNSI RCATGY 2 cut(s) 83, 526
BstSCI CCNGG 3 cut(s) 337, 597, 1294
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 2 cut(s) 13, 15
BstV1I GCAGC 9 cut(s) 4, 403, 411, 862, 884, 1105, 1278, 1292, 1295
BstX2I RGATCY 2 cut(s) 475, 1000
BstYI RGATCY 2 cut(s) 475, 1000
BsuI GTATCC 1 cut(s) 960
BsuRI GGCC 1 cut(s) 863
BtgI CCRYGG 2 cut(s) 465, 1311
BtgZI GCGATG 1 cut(s) 72
BtrI CACGTC 1 cut(s) 755
BtsCI GGATG 1 cut(s) 599
BtsI GCAGTG 1 cut(s) 1172
BtsIMutI CAGTG 4 cut(s) 62, 310, 613, 1172
Cac8I GCNNGC 7 cut(s) 15, 93, 980, 1101, 1354, 1358, 1370
CaiI CAGNNNCTG 1 cut(s) 911
CfoI GCGC 3 cut(s) 15, 17, 824
Cfr10I RCCGGY 1 cut(s) 692
Cfr13I GGNCC 4 cut(s) 395, 1187, 1381, 1401
Csp6I GTAC 6 cut(s) 300, 332, 897, 1131, 1237, 1374
CspCI CAANNNNNGTGG 2 cut(s) 657, 692
CviAII CATG 6 cut(s) 80, 428, 466, 523, 671, 847
CviQI GTAC 6 cut(s) 300, 332, 897, 1131, 1237, 1374
DdeI CTNAG 5 cut(s) 288, 344, 552, 1017, 1122
DpnI GATC 5 cut(s) 109, 477, 510, 834, 1002
DpnII GATC 5 cut(s) 107, 475, 508, 832, 1000
DraI TTTAAA 2 cut(s) 972, 1057
EaeI YGGCCR 1 cut(s) 861
Eam1104I CTCTTC 3 cut(s) 185, 345, 1085
EarI CTCTTC 3 cut(s) 185, 345, 1085
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 548
Eco32I GATATC 1 cut(s) 856
Eco47I GGWCC 4 cut(s) 395, 1187, 1381, 1401
Eco57I CTGAAG 3 cut(s) 290, 1203, 1216
EcoO109I RGGNCCY 3 cut(s) 395, 1187, 1381
EcoRI GAATTC 1 cut(s) 914
EcoRII CCWGG 2 cut(s) 337, 1294
EcoRV GATATC 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 6 cut(s) 83, 431, 469, 526, 674, 850
FaqI GGGAC 2 cut(s) 715, 1313
FatI CATG 6 cut(s) 79, 427, 465, 522, 670, 846
FbaI TGATCA 1 cut(s) 832
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 9 cut(s) 18, 417, 425, 873, 876, 1119, 1281, 1284, 1292
FokI GGATG 1 cut(s) 606
Fsp4HI GCNGC 9 cut(s) 18, 417, 425, 873, 876, 1119, 1281, 1284, 1292
FspBI CTAG 4 cut(s) 761, 1073, 1377, 1385
GlaI GCGC 3 cut(s) 14, 16, 823
GluI GCNGC 9 cut(s) 18, 417, 425, 873, 876, 1119, 1281, 1284, 1292
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 863
HapII CCGG 2 cut(s) 598, 693
HhaI GCGC 3 cut(s) 15, 17, 824
Hin1II CATG 6 cut(s) 83, 431, 469, 526, 674, 850
Hin6I GCGC 3 cut(s) 13, 15, 822
HinP1I GCGC 3 cut(s) 13, 15, 822
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HinfI GANTC 7 cut(s) 295, 367, 703, 1013, 1079, 1093, 1427
HpaII CCGG 2 cut(s) 598, 693
HphI GGTGA 3 cut(s) 117, 827, 1283
Hpy166II GTNNAC 2 cut(s) 690, 931
Hpy188I TCNGA 7 cut(s) 159, 270, 291, 616, 920, 1018, 1396
Hpy188III TCNNGA 4 cut(s) 504, 517, 1181, 1209
Hpy8I GTNNAC 2 cut(s) 690, 931
Hpy99I CGWCG 1 cut(s) 1197
HpyAV CCTTC 8 cut(s) 207, 221, 239, 265, 1027, 1178, 1235, 1240
HpyCH4III ACNGT 6 cut(s) 35, 66, 260, 907, 966, 1157
HpyCH4IV ACGT 3 cut(s) 754, 838, 1195
HpyCH4V TGCA 8 cut(s) 20, 419, 427, 872, 988, 1103, 1109, 1352
HpyF10VI GCNNNNNNNGC 3 cut(s) 869, 1115, 1249
HpyF3I CTNAG 5 cut(s) 288, 344, 552, 1017, 1122
HpySE526I ACGT 3 cut(s) 754, 838, 1195
Hsp92II CATG 6 cut(s) 83, 431, 469, 526, 674, 850
HspAI GCGC 3 cut(s) 13, 15, 822
KpnI GGTACC 1 cut(s) 900
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 5 cut(s) 107, 475, 508, 832, 1000
LmnI GCTCC 2 cut(s) 355, 1264
Lsp1109I GCAGC 9 cut(s) 4, 403, 411, 862, 884, 1105, 1278, 1292, 1295
LweI GCATC 4 cut(s) 163, 274, 584, 991
MaeI CTAG 4 cut(s) 761, 1073, 1377, 1385
MaeII ACGT 3 cut(s) 754, 838, 1195
MaeIII GTNAC 3 cut(s) 763, 994, 1316
MalI GATC 5 cut(s) 109, 477, 510, 834, 1002
MbiI CCGCTC 1 cut(s) 358
MboI GATC 5 cut(s) 107, 475, 508, 832, 1000
MfeI CAATTG 1 cut(s) 828
MflI RGATCY 2 cut(s) 475, 1000
MlsI TGGCCA 1 cut(s) 863
MluNI TGGCCA 1 cut(s) 863
MlyI GAGTC 2 cut(s) 697, 1102
MmeI TCCRAC 1 cut(s) 367
Mox20I TGGCCA 1 cut(s) 863
MroXI GAANNNNTTC 1 cut(s) 1176
MscI TGGCCA 1 cut(s) 863
MseI TTAA 8 cut(s) 209, 471, 494, 902, 971, 1056, 1152, 1441
Msp20I TGGCCA 1 cut(s) 863
MspA1I CMGCKG 1 cut(s) 875
MspI CCGG 2 cut(s) 598, 693
MspR9I CCNGG 3 cut(s) 339, 599, 1296
MunI CAATTG 1 cut(s) 828
MvaI CCWGG 2 cut(s) 339, 1296
MvnI CGCG 2 cut(s) 13, 15
MwoI GCNNNNNNNGC 3 cut(s) 869, 1115, 1249
NciI CCSGG 1 cut(s) 599
NcoI CCATGG 1 cut(s) 465
NdeII GATC 5 cut(s) 107, 475, 508, 832, 1000
NlaIII CATG 6 cut(s) 83, 431, 469, 526, 674, 850
NlaIV GGNNCC 3 cut(s) 396, 898, 1382
NmuCI GTSAC 2 cut(s) 994, 1316
NspI RCATGY 2 cut(s) 83, 526
PauI GCGCGC 1 cut(s) 13
PciI ACATGT 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 1176
PfeI GAWTC 5 cut(s) 295, 367, 1013, 1079, 1427
PkrI GCNGC 9 cut(s) 19, 418, 426, 874, 877, 1120, 1282, 1285, 1293
PleI GAGTC 2 cut(s) 697, 1101
PpsI GAGTC 2 cut(s) 697, 1101
PpuMI RGGWCCY 3 cut(s) 395, 1187, 1381
PscI ACATGT 1 cut(s) 522
PshBI ATTAAT 1 cut(s) 494
Psp5II RGGWCCY 3 cut(s) 395, 1187, 1381
Psp6I CCWGG 2 cut(s) 337, 1294
PspGI CCWGG 2 cut(s) 337, 1294
PspN4I GGNNCC 3 cut(s) 396, 898, 1382
PspPI GGNCC 4 cut(s) 395, 1187, 1381, 1401
PspPPI RGGWCCY 3 cut(s) 395, 1187, 1381
PstI CTGCAG 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 2 cut(s) 475, 1000
PteI GCGCGC 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 6 cut(s) 301, 333, 898, 1132, 1238, 1375
RsaNI GTAC 6 cut(s) 300, 332, 897, 1131, 1237, 1374
SaqAI TTAA 8 cut(s) 209, 471, 494, 902, 971, 1056, 1152, 1441
SatI GCNGC 9 cut(s) 18, 417, 425, 873, 876, 1119, 1281, 1284, 1292
Sau3AI GATC 5 cut(s) 107, 475, 508, 832, 1000
Sau96I GGNCC 4 cut(s) 395, 1187, 1381, 1401
SchI GAGTC 2 cut(s) 697, 1102
ScrFI CCNGG 3 cut(s) 339, 599, 1296
SfaNI GCATC 4 cut(s) 163, 274, 584, 991
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 4 cut(s) 395, 1187, 1381, 1401
SmiI ATTTAAAT 1 cut(s) 1057
SsiI CCGC 3 cut(s) 11, 358, 878
SspI AATATT 1 cut(s) 1045
SspMI CTAG 4 cut(s) 761, 1073, 1377, 1385
StyD4I CCNGG 3 cut(s) 337, 597, 1294
StyI CCWWGG 1 cut(s) 465
SwaI ATTTAAAT 1 cut(s) 1057
TaaI ACNGT 6 cut(s) 35, 66, 260, 907, 966, 1157
TaiI ACGT 3 cut(s) 757, 841, 1198
TaqI TCGA 1 cut(s) 1192
TatI WGTACW 1 cut(s) 331
TfiI GAWTC 5 cut(s) 295, 367, 1013, 1079, 1427
Tru1I TTAA 8 cut(s) 209, 471, 494, 902, 971, 1056, 1152, 1441
Tru9I TTAA 8 cut(s) 209, 471, 494, 902, 971, 1056, 1152, 1441
TscAI CASTG 4 cut(s) 69, 310, 613, 1172
TseFI GTSAC 2 cut(s) 994, 1316
TseI GCWGC 9 cut(s) 17, 416, 424, 872, 875, 1118, 1280, 1283, 1291
Tsp45I GTSAC 2 cut(s) 994, 1316
TspDTI ATGAA 6 cut(s) 75, 240, 249, 362, 546, 786
TspRI CASTG 4 cut(s) 69, 310, 613, 1172
VpaK11BI GGWCC 4 cut(s) 395, 1187, 1381, 1401
VspI ATTAAT 1 cut(s) 494
XapI RAATTY 5 cut(s) 121, 410, 560, 914, 1052
XceI RCATGY 2 cut(s) 83, 526
XmiI GTMKAC 1 cut(s) 689
XmnI GAANNNNTTC 1 cut(s) 1176
XspI CTAG 4 cut(s) 761, 1073, 1377, 1385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.