Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018381.1

Orthogroup ID

OG0008977

Physical Location & Seq

Genomic Coordinates Forward (+)

33520 .. 36258

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018381.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ctgaaggaagtagaagatgctcagaagattcgtaccagtgttatagattgctttgaaactgctgtacttccaggtcttagtgaagaggagcggaggaggaatcttcattttgtaattgttggagggggtcctactggggttgaatttgctgcagagctgcatgattatttccaagaagatttagtcaagttatatcccatggttaaggatcttgtgaaaataacattaatccaatcaggagatcatatcttgaacatgtttgatgaaagaattagtaattttgctgagaccaaatttcaaagagatggtattgatgttcaaacaggatgccgggttgtcagtgtttcagacaaggaaatcaaagtgaaagtgaaatcaaagggagaggtctgctctgttccacatggattggtggtgtggtctaccggcgttgggactcgtccagttgtgagagactttatggaacaaattggacaggctaatagacgtgttctagtaactgatgaatggttgcgtgtaaagggttgtgatgatgtgtatgccattggtgattgcgctacaattgatcaacgtaaaatcatggaagatatcgtggccatatttgcagctgcggacacagacaactctggtaccttaacagttgctgaattccgagatgtagttgacgacataatcattaggtatccccaagtggaacagtatttaaaaagcaagcatctgcaagatgtgacagatctattgaaagattctgaggggaatgataggaaggaagtgaatattgaagaatttaaattagccctctctctagtggattcacagaggaagagtctgcctgcaactgcacaggttgctgctcagcagggtacatatctttctaattgctttaaccgtagagagcagtgtgaagcaattcctgaaggtcctcgacgttttagaggttctggacaacatcactttcttcccttcaggtacaagcatttcgggcaatttgctccattggggggtgaggaagcagcagcagagctgcctggggactgggtttccacgggtcacagcactcaatggctctggtattctgtatatgcaagcaagcaagtgagctggcgtactagggtcctagtggtatctgattggaccagaagatttatttttgggagagattcaagccgtatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

391

Amino Acids

44.28

Weight (kDa)

5.7

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28220 AT4G28220
fragaria_vesca	FvH4_6g44592 FvH4_6g44593 FvH4_6g44690
malus_domestica	MD09G1096300.v1.1
prunus_persica	Prupe.3G231400_v2.0.a1
pyrus_communis	pycom09g02080
rosa_chinensis	RchiOBHm_Chr2g0161881
rosa_laevigata	RLG00000021305
rosa_multiflora	Rmu_co8378237.1_g000001 Rmu_sc0008565.1_g000008 Rmu_sc0018381.1_g000008 Rmu_sc0028798.1_g000001
rosa_rugosa	Rorug02G0492800 Rorug02G0492900 Rorug02G0493000
rosa_samantha	Rh2AG558800 Rh2BG572200 Rh2CG542600 Rh2DG582100
rosa_wichuraiana	Rw2G046260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	629
AccB1I	GGYRCC	1 cut(s)	629
AccBSI	CCGCTC	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	422
AciI	CCGC	2 cut(s)	91, 611
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	4 cut(s)	143, 293, 647, 785
AcuI	CTGAAG	3 cut(s)	23, 936, 949
AfaI	GTAC	6 cut(s)	34, 66, 631, 865, 971, 1108
AfiI	CCNNNNNNNGG	2 cut(s)	432, 1001
AflIII	ACRYGT	2 cut(s)	255, 487
AgsI	TTSAA	8 cut(s)	56, 143, 253, 299, 320, 742, 782, 1164
AjiI	CACGTC	1 cut(s)	488
AjnI	CCWGG	2 cut(s)	70, 1027
AluBI	AGCT	4 cut(s)	157, 608, 1024, 1101
AluI	AGCT	4 cut(s)	157, 608, 1024, 1101
Alw26I	GTCTC	2 cut(s)	281, 447
AlwI	GGATC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	1 cut(s)	594
ApeKI	GCWGC	8 cut(s)	149, 157, 605, 608, 851, 1013, 1016, 1024
ApoI	RAATTY	4 cut(s)	143, 293, 647, 785
AseI	ATTAAT	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	909
Asp718I	GGTACC	1 cut(s)	629
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	4 cut(s)	128, 920, 1114, 1134
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	560, 1016
AvaII	GGWCC	4 cut(s)	128, 920, 1114, 1134
BaeI	ACNNNNGTAYC	2 cut(s)	613, 646
BalI	TGGCCA	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	629
BbvI	GCAGC	8 cut(s)	136, 144, 595, 617, 838, 1011, 1025, 1028
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	1152
BciT130I	CCWGG	2 cut(s)	72, 1029
BciVI	GTATCC	1 cut(s)	693
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	281, 447
BfaI	CTAG	4 cut(s)	494, 806, 1110, 1118
BfmI	CTRYAG	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	693
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	8 cut(s)	150, 158, 606, 609, 852, 1014, 1017, 1025
BlpI	GCTNAGC	1 cut(s)	855
BlsI	GCNGC	8 cut(s)	151, 159, 607, 610, 853, 1015, 1018, 1026
Bme1390I	CCNGG	3 cut(s)	72, 332, 1029
Bme18I	GGWCC	4 cut(s)	128, 920, 1114, 1134
BmgBI	CACGTC	1 cut(s)	488
BmgT120I	GGNCC	4 cut(s)	128, 920, 1114, 1134
BmiI	GGNNCC	3 cut(s)	129, 631, 1115
BmrFI	CCNGG	3 cut(s)	72, 332, 1029
BmrI	ACTGGG	2 cut(s)	144, 1045
BmsI	GCATC	3 cut(s)	7, 317, 724
BmuI	ACTGGG	2 cut(s)	144, 1045
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
Bpu1102I	GCTNAGC	1 cut(s)	855
BpuMI	CCSGG	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	198, 1028, 1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 1001
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	4 cut(s)	36, 139, 443, 1040
BseBI	CCWGG	2 cut(s)	72, 1029
BseDI	CCNNGG	3 cut(s)	198, 1028, 1044
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	2 cut(s)	432, 1001
BseMII	CTCAG	4 cut(s)	35, 276, 741, 869
BseNI	ACTGG	4 cut(s)	36, 139, 443, 1040
BseRI	GAGGAG	2 cut(s)	101, 109
BseXI	GCAGC	8 cut(s)	136, 144, 595, 617, 838, 1011, 1025, 1028
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	1 cut(s)	596
BshNI	GGYRCC	1 cut(s)	629
BsiSI	CCGG	2 cut(s)	331, 426
BslFI	GGGAC	2 cut(s)	448, 1046
BslI	CCNNNNNNNGG	2 cut(s)	432, 1001
BsmAI	GTCTC	2 cut(s)	281, 447
BsmFI	GGGAC	2 cut(s)	448, 1046
BsnI	GGCC	1 cut(s)	596
Bso31I	GGTCTC	1 cut(s)	281
Bsp143I	GATC	4 cut(s)	208, 241, 565, 733
Bsp1720I	GCTNAGC	1 cut(s)	855
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	2 cut(s)	91, 611
BspANI	GGCC	1 cut(s)	596
BspCNI	CTCAG	4 cut(s)	34, 277, 742, 868
BspLI	GGNNCC	3 cut(s)	129, 631, 1115
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	4 cut(s)	36, 139, 443, 1040
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	198, 1028, 1044
BssMI	GATC	4 cut(s)	208, 241, 565, 733
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	72, 1029
Bst4CI	ACNGT	3 cut(s)	640, 699, 890
Bst6I	CTCTTC	2 cut(s)	78, 818
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstC8I	GCNNGC	5 cut(s)	713, 834, 1087, 1091, 1103
BstDEI	CTNAG	5 cut(s)	21, 77, 285, 750, 855
BstDSI	CCRYGG	2 cut(s)	198, 1044
BstF5I	GGATG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	4 cut(s)	211, 244, 568, 736
BstMAI	GTCTC	2 cut(s)	281, 447
BstMBI	GATC	4 cut(s)	208, 241, 565, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	602, 848, 982
BstNI	CCWGG	2 cut(s)	72, 1029
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	3 cut(s)	70, 330, 1027
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	8 cut(s)	136, 144, 595, 617, 838, 1011, 1025, 1028
BstX2I	RGATCY	2 cut(s)	208, 733
BstYI	RGATCY	2 cut(s)	208, 733
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	1 cut(s)	596
BtgI	CCRYGG	2 cut(s)	198, 1044
BtrI	CACGTC	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	332
BtsI	GCAGTG	1 cut(s)	905
BtsIMutI	CAGTG	3 cut(s)	43, 346, 905
Cac8I	GCNNGC	5 cut(s)	713, 834, 1087, 1091, 1103
CaiI	CAGNNNCTG	1 cut(s)	644
CfoI	GCGC	1 cut(s)	557
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	4 cut(s)	128, 920, 1114, 1134
Csp6I	GTAC	6 cut(s)	33, 65, 630, 864, 970, 1107
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	5 cut(s)	161, 199, 256, 404, 580
CviJI	RGCY	9 cut(s)	157, 479, 596, 608, 797, 1024, 1066, 1101, 1167
CviKI_1	RGCY	9 cut(s)	157, 479, 596, 608, 797, 1024, 1066, 1101, 1167
CviQI	GTAC	6 cut(s)	33, 65, 630, 864, 970, 1107
DdeI	CTNAG	5 cut(s)	21, 77, 285, 750, 855
DpnI	GATC	4 cut(s)	210, 243, 567, 735
DpnII	GATC	4 cut(s)	208, 241, 565, 733
DraI	TTTAAA	2 cut(s)	705, 790
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	2 cut(s)	78, 818
EarI	CTCTTC	2 cut(s)	78, 818
Eco130I	CCWWGG	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	4 cut(s)	128, 920, 1114, 1134
Eco57I	CTGAAG	3 cut(s)	23, 936, 949
EcoO109I	RGGNCCY	3 cut(s)	128, 920, 1114
EcoRI	GAATTC	1 cut(s)	647
EcoRII	CCWGG	2 cut(s)	70, 1027
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	5 cut(s)	164, 202, 259, 407, 583
FaqI	GGGAC	2 cut(s)	448, 1046
FatI	CATG	5 cut(s)	160, 198, 255, 403, 579
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	422
Fnu4HI	GCNGC	8 cut(s)	150, 158, 606, 609, 852, 1014, 1017, 1025
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	8 cut(s)	150, 158, 606, 609, 852, 1014, 1017, 1025
FspBI	CTAG	4 cut(s)	494, 806, 1110, 1118
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	8 cut(s)	150, 158, 606, 609, 852, 1014, 1017, 1025
HaeIII	GGCC	1 cut(s)	596
HapII	CCGG	2 cut(s)	331, 426
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	5 cut(s)	164, 202, 259, 407, 583
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	7 cut(s)	28, 100, 436, 746, 812, 826, 1160
HpaII	CCGG	2 cut(s)	331, 426
HphI	GGTGA	2 cut(s)	560, 1016
Hpy166II	GTNNAC	2 cut(s)	423, 664
Hpy188I	TCNGA	5 cut(s)	24, 349, 653, 751, 1129
Hpy188III	TCNNGA	4 cut(s)	237, 250, 914, 942
Hpy8I	GTNNAC	2 cut(s)	423, 664
Hpy99I	CGWCG	1 cut(s)	930
HpyAV	CCTTC	3 cut(s)	760, 911, 973
HpyCH4III	ACNGT	3 cut(s)	640, 699, 890
HpyCH4IV	ACGT	3 cut(s)	487, 571, 928
HpyCH4V	TGCA	7 cut(s)	152, 160, 605, 721, 836, 842, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	602, 848, 982
HpyF3I	CTNAG	5 cut(s)	21, 77, 285, 750, 855
HpySE526I	ACGT	3 cut(s)	487, 571, 928
Hsp92II	CATG	5 cut(s)	164, 202, 259, 407, 583
HspAI	GCGC	1 cut(s)	555
KpnI	GGTACC	1 cut(s)	633
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	208, 241, 565, 733
LmnI	GCTCC	2 cut(s)	88, 997
Lsp1109I	GCAGC	8 cut(s)	136, 144, 595, 617, 838, 1011, 1025, 1028
LweI	GCATC	3 cut(s)	7, 317, 724
MaeI	CTAG	4 cut(s)	494, 806, 1110, 1118
MaeII	ACGT	3 cut(s)	487, 571, 928
MaeIII	GTNAC	3 cut(s)	496, 727, 1049
MalI	GATC	4 cut(s)	210, 243, 567, 735
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	4 cut(s)	208, 241, 565, 733
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	2 cut(s)	208, 733
MlsI	TGGCCA	1 cut(s)	596
MluNI	TGGCCA	1 cut(s)	596
MlyI	GAGTC	2 cut(s)	430, 835
MmeI	TCCRAC	1 cut(s)	100
Mox20I	TGGCCA	1 cut(s)	596
MroXI	GAANNNNTTC	1 cut(s)	909
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	7 cut(s)	204, 227, 635, 704, 789, 885, 1174
Msp20I	TGGCCA	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	2 cut(s)	331, 426
MspR9I	CCNGG	3 cut(s)	72, 332, 1029
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	72, 1029
MwoI	GCNNNNNNNGC	3 cut(s)	602, 848, 982
NciI	CCSGG	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	4 cut(s)	208, 241, 565, 733
NlaIII	CATG	5 cut(s)	164, 202, 259, 407, 583
NlaIV	GGNNCC	3 cut(s)	129, 631, 1115
NmuCI	GTSAC	2 cut(s)	727, 1049
NspI	RCATGY	1 cut(s)	259
PciI	ACATGT	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	909
PfeI	GAWTC	5 cut(s)	28, 100, 746, 812, 1160
PkrI	GCNGC	8 cut(s)	151, 159, 607, 610, 853, 1015, 1018, 1026
PleI	GAGTC	2 cut(s)	430, 834
PpsI	GAGTC	2 cut(s)	430, 834
PpuMI	RGGWCCY	3 cut(s)	128, 920, 1114
PscI	ACATGT	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	227
Psp5II	RGGWCCY	3 cut(s)	128, 920, 1114
Psp6I	CCWGG	2 cut(s)	70, 1027
PspGI	CCWGG	2 cut(s)	70, 1027
PspN4I	GGNNCC	3 cut(s)	129, 631, 1115
PspPI	GGNCC	4 cut(s)	128, 920, 1114, 1134
PspPPI	RGGWCCY	3 cut(s)	128, 920, 1114
PstI	CTGCAG	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	2 cut(s)	208, 733
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	6 cut(s)	34, 66, 631, 865, 971, 1108
RsaNI	GTAC	6 cut(s)	33, 65, 630, 864, 970, 1107
SaqAI	TTAA	7 cut(s)	204, 227, 635, 704, 789, 885, 1174
SatI	GCNGC	8 cut(s)	150, 158, 606, 609, 852, 1014, 1017, 1025
Sau3AI	GATC	4 cut(s)	208, 241, 565, 733
Sau96I	GGNCC	4 cut(s)	128, 920, 1114, 1134
SchI	GAGTC	2 cut(s)	430, 835
ScrFI	CCNGG	3 cut(s)	72, 332, 1029
SfaNI	GCATC	3 cut(s)	7, 317, 724
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	4 cut(s)	128, 920, 1114, 1134
SmiI	ATTTAAAT	1 cut(s)	790
SsiI	CCGC	2 cut(s)	91, 611
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	4 cut(s)	494, 806, 1110, 1118
StyD4I	CCNGG	3 cut(s)	70, 330, 1027
StyI	CCWWGG	1 cut(s)	198
SwaI	ATTTAAAT	1 cut(s)	790
TaaI	ACNGT	3 cut(s)	640, 699, 890
TaiI	ACGT	3 cut(s)	490, 574, 931
TaqI	TCGA	1 cut(s)	925
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	5 cut(s)	28, 100, 746, 812, 1160
Tru1I	TTAA	7 cut(s)	204, 227, 635, 704, 789, 885, 1174
Tru9I	TTAA	7 cut(s)	204, 227, 635, 704, 789, 885, 1174
TscAI	CASTG	3 cut(s)	43, 346, 905
TseFI	GTSAC	2 cut(s)	727, 1049
TseI	GCWGC	8 cut(s)	149, 157, 605, 608, 851, 1013, 1016, 1024
Tsp45I	GTSAC	2 cut(s)	727, 1049
TspDTI	ATGAA	3 cut(s)	95, 279, 519
TspRI	CASTG	3 cut(s)	43, 346, 905
VpaK11BI	GGWCC	4 cut(s)	128, 920, 1114, 1134
VspI	ATTAAT	1 cut(s)	227
XapI	RAATTY	4 cut(s)	143, 293, 647, 785
XceI	RCATGY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	422
XmnI	GAANNNNTTC	1 cut(s)	909
XspI	CTAG	4 cut(s)	494, 806, 1110, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.