Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010808

Physical Location & Seq

Genomic Coordinates Reverse (-)

35625795 .. 35629220

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3426 bp

ATGGGTGCTCGATCTTCTTCCTCTCCGGTCACCAATTTCCTCTCTTTCCCACTACCCACTTCGCCGCCGCCGCTGCTTCTGAAGCTCGTCTTGCTCTTCTTCTGCGTGTTCGCCGCCTCCAGAAACGGCGTCGTTTCGGCGGAGACCGACGCATCGGTGCTGCTCGAGCTCAAAGGCGCGGTCTTGGACTCCTTGGGGCTGCTCTCCACCTGGGGAAGGCTCAATTCCAGCCACTGTGACTGGTCCGGCGTCTCCTGCGACAGCAATTTTCGTGTCGTTTCGCTCAACATTACCGGAGACGGAGGTAAATCGGAATCGGAACCCTTTTCCTGCGCTTATTATGGTCAGTTTCCGTTTTACGGGCTCGGAGTTAGGAGGAGCTGTGTGGAGGGTGGAGGGAGCTTGGTGGGGAAGCTGCCCTCTGTGATTGGGAAGCTCACTGAGCTAAAGGTGCTGTCTTTGCCGTTTAATGGTTTCGACGGCGAAATTCCGGCCGAAATTTGGGAGATGAGGAGTTTGGAGGTACTTGATCTTGAAGGGAATTCGGTTACTGGGTCTTTGCCGGTTCGGGTGAACCCGAATTTGAGGGTTCTGAATCTTGGGTTTAATAAGATTCAAGGGGAGATACCGATCTTGAGCTCTGTGAGCTTGGAGATCTTGAATTTAGCTGGGAATAGGGTGAATGGCTCGGTTCCGGGTTATGTTGGGAGGTTGAAAGGGGTGTACTTGTCGTACAATTTTCTCAGTGGGGATATTCCGAGTGAGATTGGGGAGAATTGTGGGAGGCTTGAGCATCTTGATTTGTCTGGGAACTTCTTGGTTCATAAGATTCCGAGTGGTTTGGGGAATTGCAGTAAGCTGAGGACGCTGCTGTTGTATTCGAATATGTTGGAGGAGGGTGTTCCGGCTGAGCTGGGCCGGCTTCAAGGGCTTGAAGTGTTGGATGTGTCGAGGAATAGCTTGAGTGGTTCGTTGCCTCGGGAGCTGGGGAATTGTTCTGAGTTGTCTGTGCTTGTGCTTTCGTCGCTGTTTAATCCCCTTCCTGTTGTGCGAGGCAATTATACTGATGAGTCTTTGTTGGAGCAGTTGAGTTCTATGAATGATGATTTCAATTACTTTCAAGGGTCAATGCCTAAGGAGATTACAAGCCTTCCGAAGCTGAAGATCTTGTGGGCGCCAAGAGCAAGTATTGAGGGCAGCTTTCCAAGTGATTGGGGTGCTTGTGAGAACTTGGAAATGATCAATTTGGCTCAGAATTTTTTTACTGGGGAAATTTCTAGTGGGCTCAACCGCTGCCAGAAGCTTCATTTTCTTGACCTGAGCTCTAACAAGCTTACTGGGGAGCTTGTTCAGGTTCTTCAGGTTCCTTGTATGACTATGCTTGATGTCAGCGGAAATTTCTTGTCAGGTTCAGTGCCTGAATATGCTAACAGTACTTGTGGTCCTGTTTTTTCTGTGGATCTTTCTTTCAAAGATGATGATTTTTCCTCGCCCTATGAAGCATTTTTTGGATCTAAAGCTCAAGCTGGAATGCCAGTGCTATGGCACACAGAGGATGATGTTGTTGTAGTAATGCACAACTTTGGGCACAATAATTTTACCGGCACTCTGCAATCATTGCCCATTGCACCCGAAAGGTTTCAGAAGAAAATTCTCTATGCGTTCCTTGTTGGAGAAAACAAGCTTACTGGAGCATTTCCAGGTAAATTGTTTGGGAAGTGTCAGGTATTAGGTTCACTGATTGTTAATGTTAGCAACAACAGGTTGGATGGGGAGATTCCAACTGAAATCGGTAACATGTGTGTATCTCTCAAGTTTTTAGATGCATCTGTGAATCAGATTATGGGTTCTATTCCCCCTAGTTTTGGAGAATTGGTGTCTCTTGCTGGCCTTAACTTGAGTTCGAACATGTTGCAAGGTCAAATTCCGACAACTATTGGCCAGATAAGGGATCTGGAGCATCTTTCTTTGTCTGGTAATAACCTCACAGGTGTTATCCCTGCTAGTTTGGGGCAGCTTTACTCCTTGCATGTGCTTGAGCTTTCTCGGAACTCTCTCACTGGTGAGATACCAAAAGATCTAGTAAGCTTGCGAAACTTGAGAGTTCTTCTGCTGGACAAAAATAAACTTTCTGGCCAGATTCCATCTGGGTTGGCAAATGTGACCACGCTCTCAGCCTTCAATGTGTCGTACAATAACTTCTCTGGTTCATTGCCTTTGAACAATAACCTGGTGAACTGCAATACTGCTCTGGGAAACCCCTATCTTAGTTCCTGTCCCACACTTTCTCAATTACAGCCAGCTGTTTCTCAAGGAAGAGTTGGCGATTCCGAACCTTATGCTTCACCACTGGTAGGAACTTCGAAGACTGCTGGTAGTGGTTTCAATTCAATTGAAATAGCATCCATTACATCTGCATCTGCCATTGTTTTAGTGCTTCTAGCTCTTGTTGTTCTGTTCTTGTATACACGGAAGTGGAATCGAAAGTCTGGAGGTATAGGCTCTACTAGGAAGGAAGTTACAGTTTTCACAAACATTGGTGTTCCACTGACTTTTGAGAATGTTGTTCGGGCCACGGGGAGCTTCAATGCTAGCAATTGTATTGGGAATGGAGGTTTTGGAGCAACTTATAAGGCAGAGATATCACCTGGAGTCCTAGTGGCGATAAAACGGCTTGCAGTTGGAAGGTTCCAAGGAGTGCAACAGTTTCATGCAGAAATCAAGACTCTGGGGAGGCTTAGACATCCAAATCTGGTCACTTTACTAGGATATCATGCCAGTGAAACAGAGATGTTCCTGATATATAATTATTTTCCTGGTGGTAACCTGGAGAAATTTATTCAGGAAAGGTCTACCAGGGCTGTGGATTGGAAGATACTTCACAAGATTGCTTTGGACATAGCCCGTGCACTTGCCTACCTGCATGACCAGTGTGTACCTCGTGTCCTCCACCGTGATGTCAAACCCAGCAATATTTTGTTGGATGACGATTTTAATGCATATCTATCAGACTTTGGTTTAGCCAGACTTCTGGGAACTTCAGAAACCCATGCTACTACTGGTGTAGCTGGGACTTTTGGATATGTTGCCCCAGAATATGCAATGACGTGTCGTGTTTCAGATAAGTCTGATGTGTATAGTTATGGTGTGGTGCTTCTGGAGTTGCTCTCTGACAAGAAAGTGTTGGATCCTTCCTTCTCTTCGTATGGAAATGGATTCAATATTGTTGCATGGGCATGTATGCTTCTTCGACAAGGCCGAGCAAAGGAATTCTTTTCCGCAGGGTTGTGGGATGCAGGCCCCCATGATGATTTGGTAGAAGTTCTACACTTGGCAGTGGTATGTACGGTCGATTCTCTCTCAACAAGGCCTACTATGAGGCAAGTTGTTCGACGGCTGAAGCAACTTCAACCCCCCTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

1142

Amino Acids

123.37

Weight (kDa)

5.98

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	48 - 87	2.5e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	252 - 391	3e-07	Leucine-rich repeat region
LRR_8	PF13855	652 - 710	1.1e-08	Leucine rich repeat
Pkinase	PF00069	864 - 1063	1.1e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	865 - 1133	6.9e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02130 AT3G02130
fragaria_vesca	FvH4_6g46830
malus_domestica	MD09G1067100.v1.1 MD17G1060000.v1.1 MD17G1060100.v1.1
prunus_persica	Prupe.3G254600_v2.0.a1
pyrus_communis	pycom111g05640 pycom17g05970 pycom17g05980
rosa_chinensis	RchiOBHm_Chr2g0165821
rosa_laevigata	RLG00000021558
rosa_multiflora	Rmu_sc0003227.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085480
rosa_rugosa	Rorug02G0518000
rosa_samantha	Rh2AG583700 Rh2BG595700 Rh2CG566600 Rh2DG605500
rosa_wichuraiana	Rw2G048670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2631
Acc36I	ACCTGC	1 cut(s)	2928
AccB1I	GGYRCC	1 cut(s)	1174
AccI	GTMKAC	2 cut(s)	2465, 2852
AccII	CGCG	1 cut(s)	179
AciI	CCGC	9 cut(s)	65, 68, 71, 114, 140, 179, 1291, 1392, 3279
AclWI	GGATC	5 cut(s)	1467, 1519, 1959, 3182, 3195
AcoI	YGGCCR	3 cut(s)	492, 1939, 2134
AcuI	CTGAAG	5 cut(s)	101, 1181, 1343, 3024, 3419
AcyI	GRCGYC	3 cut(s)	129, 249, 1175
AfaI	GTAC	7 cut(s)	525, 725, 734, 1435, 2192, 2937, 3346
AfiI	CCNNNNNNNGG	8 cut(s)	216, 359, 470, 501, 1865, 1948, 2354, 3265
AflIII	ACRYGT	3 cut(s)	1797, 1908, 3107
AjiI	CACGTC	1 cut(s)	3108
AjnI	CCWGG	7 cut(s)	209, 1699, 2229, 2647, 2815, 2826, 2855
AjuI	GAANNNNNNNTTGG	2 cut(s)	1491, 1523
AleI	CACNNNNGTG	1 cut(s)	2473
Alw21I	GWGCWC	5 cut(s)	10, 171, 641, 1325, 2911
Alw26I	GTCTC	4 cut(s)	137, 256, 291, 1884
Alw44I	GTGCAC	1 cut(s)	2907
AlwI	GGATC	5 cut(s)	1467, 1519, 1959, 3182, 3195
AlwNI	CAGNNNCTG	2 cut(s)	234, 1418
Ama87I	CYCGRG	2 cut(s)	164, 978
AoxI	GGCC	9 cut(s)	492, 916, 1888, 1939, 2134, 2571, 3256, 3298, 3368
ApaLI	GTGCAC	1 cut(s)	2907
ApeKI	GCWGC	8 cut(s)	73, 160, 199, 415, 868, 1197, 1293, 2014
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
Asp700I	GAANNNNTTC	1 cut(s)	1638
AspLEI	GCGC	3 cut(s)	179, 335, 1177
AspS9I	GGNCC	5 cut(s)	243, 916, 1442, 2571, 3299
AsuC2I	CCSGG	1 cut(s)	696
AsuHPI	GGTGA	7 cut(s)	22, 583, 691, 2075, 2245, 2337, 2637
AsuII	TTCGAA	3 cut(s)	881, 1904, 2363
AsuNHI	GCTAGC	1 cut(s)	2591
AvaI	CYCGRG	2 cut(s)	164, 978
AvaII	GGWCC	2 cut(s)	243, 1442
AxyI	CCTNAGG	1 cut(s)	1134
BaeGI	GKGCMC	2 cut(s)	1590, 2911
BalI	TGGCCA	2 cut(s)	1941, 2136
BamHI	GGATCC	1 cut(s)	3187
BanI	GGYRCC	1 cut(s)	1174
BanII	GRGCYC	5 cut(s)	171, 366, 641, 1287, 1325
BarI	GAAGNNNNNNTAC	2 cut(s)	2183, 2215
BauI	CACGAG	1 cut(s)	2940
BbsI	GAAGAC	1 cut(s)	2372
Bbv12I	GWGCWC	5 cut(s)	10, 171, 641, 1325, 2911
BbvCI	CCTCAGC	1 cut(s)	860
BbvI	GCAGC	8 cut(s)	60, 147, 186, 402, 855, 1209, 1280, 2026
BccI	CCATC	2 cut(s)	1763, 2152
BceAI	ACGGC	5 cut(s)	142, 448, 496, 2687, 3410
BcgI	CGANNNNNNTGC	8 cut(s)	1894, 1928, 2321, 2355, 2978, 3012, 3371, 3405
BciT130I	CCWGG	7 cut(s)	211, 1701, 2231, 2649, 2817, 2828, 2857
BclI	TGATCA	1 cut(s)	1239
BcnI	CCSGG	1 cut(s)	696
BcoDI	GTCTC	4 cut(s)	137, 256, 291, 1884
BfaI	CTAG	9 cut(s)	1278, 1860, 2004, 2081, 2441, 2508, 2592, 2657, 2765
BfoI	RGCGCY	1 cut(s)	1178
BfuAI	ACCTGC	1 cut(s)	2928
BglII	AGATCT	3 cut(s)	654, 1164, 2077
BlpI	GCTNAGC	1 cut(s)	909
BmcAI	AGTACT	1 cut(s)	1435
Bme1390I	CCNGG	8 cut(s)	211, 696, 1701, 2231, 2649, 2817, 2828, 2857
Bme18I	GGWCC	2 cut(s)	243, 1442
BmeT110I	CYCGRG	2 cut(s)	164, 978
BmgBI	CACGTC	1 cut(s)	3108
BmgT120I	GGNCC	5 cut(s)	243, 916, 1442, 2571, 3299
BmiI	GGNNCC	7 cut(s)	321, 693, 1176, 1365, 2690, 3189, 3301
BmrFI	CCNGG	8 cut(s)	211, 696, 1701, 2231, 2649, 2817, 2828, 2857
BmrI	ACTGGG	3 cut(s)	561, 1275, 1347
BmsI	GCATC	8 cut(s)	161, 802, 1813, 1835, 1969, 2411, 2426, 3283
BmtI	GCTAGC	1 cut(s)	2595
BmuI	ACTGGG	3 cut(s)	561, 1275, 1347
BpiI	GAAGAC	1 cut(s)	2372
BplI	GAGNNNNNCTC	2 cut(s)	3152, 3184
BpmI	CTGGAG	7 cut(s)	103, 1710, 1976, 2511, 2670, 2849, 3179
Bpu10I	CCTNAGC	2 cut(s)	860, 1319
Bpu1102I	GCTNAGC	1 cut(s)	909
Bpu14I	TTCGAA	3 cut(s)	881, 1904, 2363
BpuEI	CTTGAG	9 cut(s)	655, 809, 982, 1506, 1796, 1918, 2057, 2119, 2295
BpuMI	CCSGG	1 cut(s)	696
BsaBI	GATNNNNATC	1 cut(s)	629
BsaHI	GRCGYC	3 cut(s)	129, 249, 1175
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	6 cut(s)	192, 210, 977, 2574, 2692, 2856
BsaWI	WCCGGW	2 cut(s)	25, 293
BsaXI	ACNNNNNCTCC	6 cut(s)	367, 397, 1860, 1890, 2643, 2673
Bsc4I	CCNNNNNNNGG	8 cut(s)	216, 359, 470, 501, 1865, 1948, 2354, 3265
Bse118I	RCCGGY	3 cut(s)	562, 918, 1601
Bse21I	CCTNAGG	1 cut(s)	1134
Bse3DI	GCAATG	4 cut(s)	1616, 1623, 2210, 3108
Bse8I	GATNNNNATC	1 cut(s)	629
BseBI	CCWGG	7 cut(s)	211, 1701, 2231, 2649, 2817, 2828, 2857
BseDI	CCNNGG	6 cut(s)	192, 210, 977, 2574, 2692, 2856
BseGI	GGATG	7 cut(s)	949, 1561, 1774, 2402, 2743, 2989, 3298
BseJI	GATNNNNATC	1 cut(s)	629
BseLI	CCNNNNNNNGG	8 cut(s)	216, 359, 470, 501, 1865, 1948, 2354, 3265
BseMI	GCAATG	4 cut(s)	1616, 1623, 2210, 3108
BseMII	CTCAG	8 cut(s)	432, 757, 851, 900, 990, 1265, 1310, 2187
BseRI	GAGGAG	3 cut(s)	391, 526, 908
BseSI	GKGCMC	2 cut(s)	1590, 2911
BseX3I	CGGCCG	1 cut(s)	492
BseXI	GCAGC	8 cut(s)	60, 147, 186, 402, 855, 1209, 1280, 2026
BseYI	CCCAGC	5 cut(s)	668, 913, 985, 2966, 3068
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	2 cut(s)	495, 3351
BshFI	GGCC	9 cut(s)	494, 918, 1890, 1941, 2136, 2573, 3258, 3300, 3370
BshNI	GGYRCC	1 cut(s)	1174
BsiEI	CGRYCG	2 cut(s)	495, 3351
BsiHKAI	GWGCWC	5 cut(s)	10, 171, 641, 1325, 2911
BsiHKCI	CYCGRG	2 cut(s)	164, 978
BsiSI	CCGG	9 cut(s)	26, 246, 294, 491, 563, 695, 905, 919, 1602
BslFI	GGGAC	2 cut(s)	2262, 3085
BslI	CCNNNNNNNGG	8 cut(s)	216, 359, 470, 501, 1865, 1948, 2354, 3265
BsmAI	GTCTC	4 cut(s)	137, 256, 291, 1884
BsmBI	CGTCTC	2 cut(s)	256, 291
BsmFI	GGGAC	2 cut(s)	2262, 3085
BsmI	GAATGC	1 cut(s)	1536
BsnI	GGCC	9 cut(s)	494, 918, 1890, 1941, 2136, 2573, 3258, 3300, 3370
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	2 cut(s)	164, 978
Bsp119I	TTCGAA	3 cut(s)	881, 1904, 2363
Bsp1286I	GDGCHC	8 cut(s)	10, 171, 366, 641, 1287, 1325, 1590, 2911
Bsp1720I	GCTNAGC	1 cut(s)	909
BspACI	CCGC	9 cut(s)	65, 68, 71, 114, 140, 179, 1291, 1392, 3279
BspANI	GGCC	9 cut(s)	494, 918, 1890, 1941, 2136, 2573, 3258, 3300, 3370
BspCNI	CTCAG	8 cut(s)	433, 756, 852, 901, 991, 1264, 1311, 2186
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	7 cut(s)	321, 693, 1176, 1365, 2690, 3189, 3301
BspMI	ACCTGC	1 cut(s)	2928
BspOI	GCTAGC	1 cut(s)	2595
BspPI	GGATC	5 cut(s)	1467, 1519, 1959, 3182, 3195
BspQI	GCTCTTC	1 cut(s)	101
BspT104I	TTCGAA	3 cut(s)	881, 1904, 2363
BspT107I	GGYRCC	1 cut(s)	1174
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	4 cut(s)	1616, 1623, 2210, 3108
BsrFI	RCCGGY	3 cut(s)	562, 918, 1601
BssAI	RCCGGY	3 cut(s)	562, 918, 1601
BssECI	CCNNGG	6 cut(s)	192, 210, 977, 2574, 2692, 2856
BssNAI	GTATAC	1 cut(s)	2466
BssNI	GRCGYC	3 cut(s)	129, 249, 1175
BssSI	CACGAG	1 cut(s)	2940
BssT1I	CCWWGG	2 cut(s)	192, 2692
Bst1107I	GTATAC	1 cut(s)	2466
Bst2BI	CACGAG	1 cut(s)	2940
Bst2UI	CCWGG	7 cut(s)	211, 1701, 2231, 2649, 2817, 2828, 2857
Bst4CI	ACNGT	6 cut(s)	236, 1433, 2524, 2706, 2954, 3349
Bst6I	CTCTTC	3 cut(s)	101, 2311, 3205
BstACI	GRCGYC	3 cut(s)	129, 249, 1175
BstAPI	GCANNNNNTGC	1 cut(s)	1618
BstBI	TTCGAA	3 cut(s)	881, 1904, 2363
BstC8I	GCNNGC	7 cut(s)	920, 1888, 2090, 2301, 2593, 2676, 3298
BstDSI	CCRYGG	1 cut(s)	2574
BstEII	GGTNACC	2 cut(s)	28, 2822
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	7 cut(s)	949, 1561, 1774, 2402, 2743, 2989, 3298
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	1178
BstHHI	GCGC	3 cut(s)	179, 335, 1177
BstMAI	GTCTC	4 cut(s)	137, 256, 291, 1884
BstMCI	CGRYCG	2 cut(s)	495, 3351
BstNI	CCWGG	7 cut(s)	211, 1701, 2231, 2649, 2817, 2828, 2857
BstNSI	RCATGY	4 cut(s)	1801, 1912, 2033, 3240
BstPI	GGTNACC	2 cut(s)	28, 2822
BstSCI	CCNGG	8 cut(s)	209, 694, 1699, 2229, 2647, 2815, 2826, 2855
BstSLI	GKGCMC	2 cut(s)	1590, 2911
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	8 cut(s)	60, 147, 186, 402, 855, 1209, 1280, 2026
BstV2I	GAAGAC	1 cut(s)	2372
BstX2I	RGATCY	7 cut(s)	654, 1164, 1459, 1511, 1951, 2077, 3187
BstXI	CCANNNNNNTGG	4 cut(s)	1212, 1542, 2863, 3031
BstYI	RGATCY	7 cut(s)	654, 1164, 1459, 1511, 1951, 2077, 3187
BstZ17I	GTATAC	1 cut(s)	2466
BstZI	CGGCCG	1 cut(s)	492
Bsu36I	CCTNAGG	1 cut(s)	1134
BsuRI	GGCC	9 cut(s)	494, 918, 1890, 1941, 2136, 2573, 3258, 3300, 3370
BtgI	CCRYGG	1 cut(s)	2574
BtrI	CACGTC	1 cut(s)	3108
BtsCI	GGATG	7 cut(s)	949, 1561, 1774, 2402, 2743, 2989, 3298
BtsI	GCAGTG	1 cut(s)	3342
BveI	ACCTGC	1 cut(s)	2928
Cac8I	GCNNGC	7 cut(s)	920, 1888, 2090, 2301, 2593, 2676, 3298
CaiI	CAGNNNCTG	2 cut(s)	234, 1418
CfoI	GCGC	3 cut(s)	179, 335, 1177
Cfr10I	RCCGGY	3 cut(s)	562, 918, 1601
Cfr13I	GGNCC	5 cut(s)	243, 916, 1442, 2571, 3299
CseI	GACGC	4 cut(s)	118, 158, 238, 874
CsiI	ACCWGGT	1 cut(s)	2229
Csp6I	GTAC	7 cut(s)	524, 724, 733, 1434, 2191, 2936, 3345
CviQI	GTAC	7 cut(s)	524, 724, 733, 1434, 2191, 2936, 3345
DinI	GGCGCC	1 cut(s)	1176
EaeI	YGGCCR	3 cut(s)	492, 1939, 2134
EagI	CGGCCG	1 cut(s)	492
Eam1104I	CTCTTC	3 cut(s)	101, 2311, 3205
EarI	CTCTTC	3 cut(s)	101, 2311, 3205
EciI	GGCGGA	1 cut(s)	155
Ecl136II	GAGCTC	3 cut(s)	169, 639, 1323
EclXI	CGGCCG	1 cut(s)	492
Eco130I	CCWWGG	2 cut(s)	192, 2692
Eco147I	AGGCCT	1 cut(s)	3370
Eco24I	GRGCYC	5 cut(s)	171, 366, 641, 1287, 1325
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	2 cut(s)	2643, 2771
Eco47I	GGWCC	2 cut(s)	243, 1442
Eco52I	CGGCCG	1 cut(s)	492
Eco53kI	GAGCTC	3 cut(s)	169, 639, 1323
Eco57I	CTGAAG	5 cut(s)	101, 1181, 1343, 3024, 3419
Eco81I	CCTNAGG	1 cut(s)	1134
Eco88I	CYCGRG	2 cut(s)	164, 978
Eco91I	GGTNACC	2 cut(s)	28, 2822
EcoICRI	GAGCTC	3 cut(s)	169, 639, 1323
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	3299
EcoO65I	GGTNACC	2 cut(s)	28, 2822
EcoRI	GAATTC	2 cut(s)	541, 3269
EcoRII	CCWGG	7 cut(s)	209, 1699, 2229, 2647, 2815, 2826, 2855
EcoRV	GATATC	2 cut(s)	2643, 2771
EcoT14I	CCWWGG	2 cut(s)	192, 2692
EcoT22I	ATGCAT	2 cut(s)	1828, 3001
EcoT38I	GRGCYC	5 cut(s)	171, 366, 641, 1287, 1325
EgeI	GGCGCC	1 cut(s)	1176
EheI	GGCGCC	1 cut(s)	1176
ErhI	CCWWGG	2 cut(s)	192, 2692
Esp3I	CGTCTC	2 cut(s)	256, 291
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 3257, 3289
FaqI	GGGAC	2 cut(s)	2262, 3085
FbaI	TGATCA	1 cut(s)	1239
FblI	GTMKAC	2 cut(s)	2465, 2852
FokI	GGATG	7 cut(s)	956, 1568, 1781, 2389, 2730, 2996, 3305
FriOI	GRGCYC	5 cut(s)	171, 366, 641, 1287, 1325
FspBI	CTAG	9 cut(s)	1278, 1860, 2004, 2081, 2441, 2508, 2592, 2657, 2765
GlaI	GCGC	3 cut(s)	178, 334, 1176
GsaI	CCCAGC	5 cut(s)	672, 917, 989, 2970, 3072
GsuI	CTGGAG	7 cut(s)	103, 1710, 1976, 2511, 2670, 2849, 3179
HaeII	RGCGCY	1 cut(s)	1178
HaeIII	GGCC	9 cut(s)	494, 918, 1890, 1941, 2136, 2573, 3258, 3300, 3370
HapII	CCGG	9 cut(s)	26, 246, 294, 491, 563, 695, 905, 919, 1602
HgaI	GACGC	4 cut(s)	118, 158, 238, 874
HhaI	GCGC	3 cut(s)	179, 335, 1177
Hin1I	GRCGYC	3 cut(s)	129, 249, 1175
Hin6I	GCGC	3 cut(s)	177, 333, 1175
HinP1I	GCGC	3 cut(s)	177, 333, 1175
HindIII	AAGCTT	4 cut(s)	1301, 1331, 1682, 2086
HpaII	CCGG	9 cut(s)	26, 246, 294, 491, 563, 695, 905, 919, 1602
HphI	GGTGA	7 cut(s)	22, 583, 691, 2075, 2245, 2337, 2637
Hpy166II	GTNNAC	8 cut(s)	574, 724, 1736, 2236, 2466, 2853, 2909, 2936
Hpy8I	GTNNAC	8 cut(s)	574, 724, 1736, 2236, 2466, 2853, 2909, 2936
Hpy99I	CGWCG	5 cut(s)	134, 152, 482, 1027, 3396
HpyAV	CCTTC	9 cut(s)	210, 530, 1049, 1160, 2188, 2506, 2679, 3201, 3205
HpyCH4III	ACNGT	6 cut(s)	236, 1433, 2524, 2706, 2954, 3349
HpyCH4IV	ACGT	1 cut(s)	3107
HpySE526I	ACGT	1 cut(s)	3107
Hsp92I	GRCGYC	3 cut(s)	129, 249, 1175
HspAI	GCGC	3 cut(s)	177, 333, 1175
KasI	GGCGCC	1 cut(s)	1174
KroI	GCCGGC	1 cut(s)	918
KroNI	GCCGGC	1 cut(s)	920
Ksp22I	TGATCA	1 cut(s)	1239
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	9 cut(s)	378, 399, 982, 1081, 1342, 1691, 1957, 2580, 2621
Lsp1109I	GCAGC	8 cut(s)	60, 147, 186, 402, 855, 1209, 1280, 2026
LweI	GCATC	8 cut(s)	161, 802, 1813, 1835, 1969, 2411, 2426, 3283
MabI	ACCWGGT	1 cut(s)	2229
MaeI	CTAG	9 cut(s)	1278, 1860, 2004, 2081, 2441, 2508, 2592, 2657, 2765
MaeII	ACGT	1 cut(s)	3107
MaeIII	GTNAC	8 cut(s)	28, 236, 547, 1793, 2161, 2518, 2755, 2822
MfeI	CAATTG	2 cut(s)	2391, 2596
MflI	RGATCY	7 cut(s)	654, 1164, 1459, 1511, 1951, 2077, 3187
MhlI	GDGCHC	8 cut(s)	10, 171, 366, 641, 1287, 1325, 1590, 2911
MlsI	TGGCCA	2 cut(s)	1941, 2136
MluNI	TGGCCA	2 cut(s)	1941, 2136
Mly113I	GGCGCC	1 cut(s)	1175
MlyI	GAGTC	4 cut(s)	182, 1079, 2661, 2719
Mox20I	TGGCCA	2 cut(s)	1941, 2136
Mph1103I	ATGCAT	2 cut(s)	1828, 3001
MroNI	GCCGGC	1 cut(s)	918
MroXI	GAANNNNTTC	1 cut(s)	1638
MscI	TGGCCA	2 cut(s)	1941, 2136
MseI	TTAA	6 cut(s)	468, 606, 1032, 1746, 1893, 2994
MslI	CAYNNNNRTG	4 cut(s)	2473, 2778, 2955, 3235
Msp20I	TGGCCA	2 cut(s)	1941, 2136
MspA1I	CMGCKG	4 cut(s)	73, 1293, 1392, 2303
MspI	CCGG	9 cut(s)	26, 246, 294, 491, 563, 695, 905, 919, 1602
MspR9I	CCNGG	8 cut(s)	211, 696, 1701, 2231, 2649, 2817, 2828, 2857
MunI	CAATTG	2 cut(s)	2391, 2596
Mva1269I	GAATGC	1 cut(s)	1536
MvaI	CCWGG	7 cut(s)	211, 1701, 2231, 2649, 2817, 2828, 2857
MvnI	CGCG	1 cut(s)	179
NaeI	GCCGGC	1 cut(s)	920
NarI	GGCGCC	1 cut(s)	1175
NciI	CCSGG	1 cut(s)	696
NgoMIV	GCCGGC	1 cut(s)	918
NheI	GCTAGC	1 cut(s)	2591
NlaIV	GGNNCC	7 cut(s)	321, 693, 1176, 1365, 2690, 3189, 3301
NmeAIII	GCCGAG	1 cut(s)	3284
NmuCI	GTSAC	4 cut(s)	28, 236, 2161, 2755
NsiI	ATGCAT	2 cut(s)	1828, 3001
NspI	RCATGY	4 cut(s)	1801, 1912, 2033, 3240
NspV	TTCGAA	3 cut(s)	881, 1904, 2363
OliI	CACNNNNGTG	1 cut(s)	2473
PaeR7I	CTCGAG	1 cut(s)	164
PceI	AGGCCT	1 cut(s)	3370
PciI	ACATGT	2 cut(s)	1797, 1908
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	3256
PctI	GAATGC	1 cut(s)	1536
PdiI	GCCGGC	1 cut(s)	920
PdmI	GAANNNNTTC	1 cut(s)	1638
PleI	GAGTC	4 cut(s)	182, 1078, 2660, 2719
PluTI	GGCGCC	1 cut(s)	1178
PpsI	GAGTC	4 cut(s)	182, 1078, 2660, 2719
PscI	ACATGT	2 cut(s)	1797, 1908
PsiI	TTATAA	1 cut(s)	2631
Psp124BI	GAGCTC	3 cut(s)	171, 641, 1325
Psp6I	CCWGG	7 cut(s)	209, 1699, 2229, 2647, 2815, 2826, 2855
PspEI	GGTNACC	2 cut(s)	28, 2822
PspFI	CCCAGC	5 cut(s)	668, 913, 985, 2966, 3068
PspGI	CCWGG	7 cut(s)	209, 1699, 2229, 2647, 2815, 2826, 2855
PspN4I	GGNNCC	7 cut(s)	321, 693, 1176, 1365, 2690, 3189, 3301
PspPI	GGNCC	5 cut(s)	243, 916, 1442, 2571, 3299
PspXI	VCTCGAGB	1 cut(s)	164
PstNI	CAGNNNCTG	2 cut(s)	234, 1418
PsuI	RGATCY	7 cut(s)	654, 1164, 1459, 1511, 1951, 2077, 3187
PvuII	CAGCTG	1 cut(s)	2303
RsaI	GTAC	7 cut(s)	525, 725, 734, 1435, 2192, 2937, 3346
RsaNI	GTAC	7 cut(s)	524, 724, 733, 1434, 2191, 2936, 3345
RseI	CAYNNNNRTG	4 cut(s)	2473, 2778, 2955, 3235
SacI	GAGCTC	3 cut(s)	171, 641, 1325
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	6 cut(s)	468, 606, 1032, 1746, 1893, 2994
Sau96I	GGNCC	5 cut(s)	243, 916, 1442, 2571, 3299
ScaI	AGTACT	1 cut(s)	1435
SchI	GAGTC	4 cut(s)	182, 1079, 2661, 2719
ScrFI	CCNGG	8 cut(s)	211, 696, 1701, 2231, 2649, 2817, 2828, 2857
SduI	GDGCHC	8 cut(s)	10, 171, 366, 641, 1287, 1325, 1590, 2911
SexAI	ACCWGGT	1 cut(s)	2229
SfaNI	GCATC	8 cut(s)	161, 802, 1813, 1835, 1969, 2411, 2426, 3283
SfoI	GGCGCC	1 cut(s)	1176
Sfr274I	CTCGAG	1 cut(s)	164
SfuI	TTCGAA	3 cut(s)	881, 1904, 2363
SinI	GGWCC	2 cut(s)	243, 1442
SlaI	CTCGAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	4 cut(s)	2473, 2778, 2955, 3235
SseBI	AGGCCT	1 cut(s)	3370
SsiI	CCGC	9 cut(s)	65, 68, 71, 114, 140, 179, 1291, 1392, 3279
SspDI	GGCGCC	1 cut(s)	1174
SspI	AATATT	2 cut(s)	2974, 3223
SspMI	CTAG	9 cut(s)	1278, 1860, 2004, 2081, 2441, 2508, 2592, 2657, 2765
SstI	GAGCTC	3 cut(s)	171, 641, 1325
StuI	AGGCCT	1 cut(s)	3370
StyD4I	CCNGG	8 cut(s)	209, 694, 1699, 2229, 2647, 2815, 2826, 2855
StyI	CCWWGG	2 cut(s)	192, 2692
TaaI	ACNGT	6 cut(s)	236, 1433, 2524, 2706, 2954, 3349
TaiI	ACGT	1 cut(s)	3110
TaqII	GACCGA	1 cut(s)	161
TatI	WGTACW	2 cut(s)	723, 1433
TauI	GCSGC	4 cut(s)	67, 70, 73, 116
Tru1I	TTAA	6 cut(s)	468, 606, 1032, 1746, 1893, 2994
Tru9I	TTAA	6 cut(s)	468, 606, 1032, 1746, 1893, 2994
TseFI	GTSAC	4 cut(s)	28, 236, 2161, 2755
TseI	GCWGC	8 cut(s)	73, 160, 199, 415, 868, 1197, 1293, 2014
Tsp45I	GTSAC	4 cut(s)	28, 236, 2161, 2755
TspDTI	ATGAA	6 cut(s)	812, 1112, 1295, 1512, 2199, 2699
TspGWI	ACGGA	3 cut(s)	315, 342, 2485
VneI	GTGCAC	1 cut(s)	2907
VpaK11BI	GGWCC	2 cut(s)	243, 1442
XagI	CCTNNNNNAGG	1 cut(s)	214
XceI	RCATGY	4 cut(s)	1801, 1912, 2033, 3240
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2144, 3056
XhoI	CTCGAG	1 cut(s)	164
XmiI	GTMKAC	2 cut(s)	2465, 2852
XmnI	GAANNNNTTC	1 cut(s)	1638
XspI	CTAG	9 cut(s)	1278, 1860, 2004, 2081, 2441, 2508, 2592, 2657, 2765
ZrmI	AGTACT	1 cut(s)	1435
Zsp2I	ATGCAT	2 cut(s)	1828, 3001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.