Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010808

Physical Location & Seq

Genomic Coordinates Reverse (-)

80685205 .. 80690220

Gene Structure 5016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53375

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3435 bp

ATGGGTGTTCGATCTTCTTCCTCTCCGGTCACCAATTTCCTCTCTTTTCCGGGACCCACTTCGCCGCTGGTTCTGAAGCTCGTTTTGGTGCTGTGGGCGTGCGCGGCGGCGTCGTCACGGAACGGCGTCGTTTCGGCGGAGACGGACGCATCGGTGCTGCTTCAGCTCAAAGGCTCAGTCTTGGACTCGGAAGGGTTGCTTTCGAGCTGGGGCTCGGTCAATTCCAGTCACTGCACCTGGTCAGGAGTCTTGTGCGACGCGAATTTCCGTGTCGTTTCGCTCAACATTACCGGCGCCGGCGCCGGCGGAGGTAAATCGAAATCGAGCTCCTTTCCGTGCGTTGATTTTGGTCAGTTTCCGTTTTATGGGTTGGGGATTAGGAGGAGTTGTGTGGGTGGTAGTGGGAGGCTGGTGGGGAAGCTCCCTCCTGTGATTGGGAAGCTCACTGAGCTAAAGGTCTTGTCTTTGCCCTTTAATGGTTTTGATGGTGAAATTCCTGTTGAAATTTGGGGCATGGAGAACCTAGAGGTCGTTGATCTTGAAGGGAATTCGATCACCGGGTCTTTGCCGTTTCGGGTGAACCCGAATTTGAGGGTTCTGAATCTTGGGTTTAATAAGATTCAGGGTGAGATACCGATCTTTGACTCTGTCAGCTTAGAGATCTTGAATTTAGCTGGGAACCGGGTGAACGGCTCCGTTCCGGGTTTCGTTGGCAGGTTGGAAGGGGTGTACTTGTCATACAATTGGCTCAGTGGGGATATTCCTAGTGAGATTGGAGATAGTTGTGGCAAGCTTGAGCATCTTGATTTGTCTGGCAACTTCTTGGTTCATAAGATTCCGAGTAGTCTGGGGAACTGCAGTCGGCTGAGGACGCTGTTGTTGTATTCGAATATGTTGGAAGAAGGTATTCCGGCTGAACTCGGCCGGCTTCAGGCGCTTGAGGTGTTGGATGTGTCGAGGAATAGCTTGAGTGGTTCGTTGCCTCGAGAGCTGGGGAATTGTTCTCAGTTGTCTGTGCTTGTGCTTTCGTCGCTGTTTAATCCCCTTCCCCTTGTGCGAGCCAATTACACAGATGACTCGTTGTTGGAGCAGTTGAGTTCCATGAATGATGACTTCAATTACTTTCAAGGCTCAATGCCGAAGGAGATTACAAGCCTTCCAAAGCTGAAGATCTTGTGGGGACCGAGGGCAAGTATTGAGGGCAACTTTCCAAGTGATTGGGGTGCTTGTGAGAACTTGGAAATGATCAATTTGGCTCAGAATTTTTTTACTGGGGAAATTTCTAGTGGGCTTAACCGCTGCCAGAAGCTTCATTTTCTTGACCTAAGCACTAACAAGCTTACTGGGGAGCTTGTTCAGGTCCTTCAGGTTCCTTGTATGACTATGCTTGATGTCAGTGGAAATTTCTTGTCAGGTTCATTGCCTGAATATGCTAACAGTACTTGTCGTCCTGTTTCCTCTGTGGATCTTTCTTTCAAAGATGATGATTTTTCCTCGCCCTATGAAGCATTTTTTGGATCTAAAGCTCAAGCTGGAATGCCATTGCAATGGCCCACAGAGGATGATGTTGTTGTAGTGATTCACAACTTTGGGCACAATAATTTTACCGGCACTCTGCAGTCATTGCCCATTGCACCCGAAAGGTTTCAGAAGAAAATTCTGTATGCATTCCTTGTTGGAGAAAACAAGCTTACTGGAGCATTTCCAGGTAATTTGTTTGGGAAGTGTCAGGGATTAGATTCACTGGTTGTTAATGTAAGCAACAACAGGTTAGATGGGAAGATTCCAACTGAAATTGGTAAAATGTGCAATTCTCTCAAGTTTTTAGATGCATCTCTGAATCGGATTGTGGGTTCCATTCCTGCTAGTTTTGGAGAATTGGTGTCTCTTGCTGGCCTTAACTTGAGTTCGAACAGGTTGCAAGGTCAAATTCCGACCACTCTTGGCCAGATAAGGGATCTGGAGCGTCTTTCTTTGTCTGGTAATAACCTTACAGGTGTTATTCCTGCTAGTTTGGGGCAGGTTTACTCCTTGCATGTGCTTGAGCTTTCTCGGAACTCTCTCACTGGTGAGATACCAAACGATCTTGTAAACTTGCGAAACTTGAGAGTTCTTCTGCTGGACAAAAATAAACTTTCTGGCCAGATTCCATCTGGTTTGGCAAATGTGACCACGCTCTCAGCCTTCAATGTGTCTTACAATAACTTCTCTGGTTCATTGCCTTTGAATAATAACCTGGTGAATTGCAATACTGCTATTGGAAACCCCCATTTAAGTTCCTGCCCCTCACTTTCTCAAGTACAGCCAGCTAATACTCAAGGAAGAGTTGGCGATTCAGAACCTTATGCTGCTTCACCATTGGTAGGAACTCAGAAGAGTGCTGGTAGCGGTTTCAATTCAATTGAAATAGCATCCATTACATCTGCATCTGCCATTGTTTTAGTGCTTATAGCTCTTGTTGTTCTATTCTTGTATACGCGGAAGTGGAATCGGAAGTCTGGAGGTCCAGGCTCTACTAGGAAGGAAGTTACTGTTTTCACAAACATTGGGGTTCCACTGACCTTTGATAGTGTTGTTCGGGGCACGGGGAGCTTCAATGCTAGCAACTGTATTGGGAATGGAGGTTTTGGAGCAACTTACAAGGCAGAGATATCACCTGGAGTCCTAGTGGCTATAAAACGGCTTGCTGTTGGAAGGTTCCAAGGAGTGCAACAGTTTCATGCAGAAATCAAAACACTGGGGAGGCTTCGACATCCAAATCTGGTCACTTTACTAGGTTACCATGCCAGTGAAACAGAGATGTTCCTAATATATAATTATTTTCCTGGTGGTAATCTGGAAAAATTTATTCAGGAAAGGTCTACCAGGGCAGTGGATTGGAAGATACTTCACAAGATTGCTTTGGACATAGCCCGTGCACTTGCCTACCTACATGATCAGTGTGTACCTCGTGTCCTTCACCGTGATGTCAAGCCCAGCAATATTTTGTTGGATGATGATTTTAATGCATATCTATCAGACTTTGGTTTGGCCAGACTTCTTGGGACTTCAGAAACCCATGCTACTACTGGTGTAGCAGGGACCTTTGGATATGTTGCCCCAGAATATGCAATGACGTGTCGTGTTTCAGATAAGTCTGATGTGTATAGTTATGGTGTAGTGCTTCTTGAGTTGCTGTCTGACAAGAAAGTGTTGGATCCTTCCTTTTCTTCATTTGGAAATGGATTCAACATCGTTGCATGGGCATGTATGCTTCTTCGACAAGGCCGTGCAAAGGAATTCTTTTCTGCAGGGTTGTGGGATGCAGGCCCCCATGATGATTTGGTTGAAGTTCTACACTTGGCAGTGGTATGTACGGTTGATTCTCTCTCGACTAGGCCTACTATGAGGCAAGTCGTTCGACGGCTAAAGCAACTTCAACCCCCCTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

1144

Amino Acids

123.35

Weight (kDa)

6.42

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	47 - 86	9e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	253 - 391	3.9e-07	Leucine-rich repeat region
LRR_8	PF13855	653 - 712	2.1e-08	Leucine rich repeat
Pkinase	PF00069	867 - 1066	1.3e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	868 - 1136	7e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02130 AT3G02130
fragaria_vesca	FvH4_6g46830
malus_domestica	MD09G1067100.v1.1 MD17G1060000.v1.1 MD17G1060100.v1.1
prunus_persica	Prupe.3G254600_v2.0.a1
pyrus_communis	pycom111g05640 pycom17g05970 pycom17g05980
rosa_chinensis	RchiOBHm_Chr2g0165821
rosa_laevigata	RLG00000021558
rosa_multiflora	Rmu_sc0003227.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085480
rosa_rugosa	Rorug02G0518000
rosa_samantha	Rh2AG583700 Rh2BG595700 Rh2CG566600 Rh2DG605500
rosa_wichuraiana	Rw2G048670

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	705, 2011
AccB1I	GGYRCC	2 cut(s)	293, 299
AccI	GTMKAC	2 cut(s)	2474, 2861
AccII	CGCG	3 cut(s)	104, 260, 2479
AciI	CCGC	8 cut(s)	65, 104, 107, 137, 306, 1297, 2388, 2479
AclWI	GGATC	5 cut(s)	1473, 1525, 1965, 3191, 3204
AcoI	YGGCCR	4 cut(s)	922, 1945, 2140, 3030
AcuI	CTGAAG	6 cut(s)	95, 146, 914, 1187, 1349, 3033
AcyI	GRCGYC	4 cut(s)	110, 126, 294, 300
AfaI	GTAC	5 cut(s)	731, 1441, 2301, 2946, 3355
AfiI	CCNNNNNNNGG	7 cut(s)	365, 434, 476, 931, 1954, 2363, 3274
AflIII	ACRYGT	1 cut(s)	3116
AjiI	CACGTC	1 cut(s)	3117
AjnI	CCWGG	7 cut(s)	236, 1705, 2235, 2506, 2656, 2824, 2864
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 1497, 1529
AloI	GAACNNNNNNTCC	2 cut(s)	1837, 1869
Alw21I	GWGCWC	2 cut(s)	329, 2920
Alw26I	GTCTC	2 cut(s)	134, 1890
Alw44I	GTGCAC	1 cut(s)	2916
AlwI	GGATC	5 cut(s)	1473, 1525, 1965, 3191, 3204
AlwNI	CAGNNNCTG	1 cut(s)	231
Ama87I	CYCGRG	1 cut(s)	984
AoxI	GGCC	9 cut(s)	922, 1550, 1894, 1945, 2140, 3030, 3265, 3307, 3377
ApaLI	GTGCAC	1 cut(s)	2916
ApeKI	GCWGC	3 cut(s)	157, 1299, 2348
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
Asp700I	GAANNNNTTC	2 cut(s)	906, 1644
AspLEI	GCGC	4 cut(s)	104, 296, 302, 937
AspS9I	GGNCC	7 cut(s)	53, 1181, 1360, 1551, 2504, 3081, 3308
AsuC2I	CCSGG	4 cut(s)	51, 559, 683, 702
AsuII	TTCGAA	2 cut(s)	887, 1910
AsuNHI	GCTAGC	1 cut(s)	2600
AvaI	CYCGRG	1 cut(s)	984
AvaII	GGWCC	5 cut(s)	53, 1181, 1360, 2504, 3081
BaeGI	GKGCMC	3 cut(s)	1596, 2585, 2920
BalI	TGGCCA	3 cut(s)	1947, 2142, 3032
BamHI	GGATCC	1 cut(s)	3196
BanI	GGYRCC	2 cut(s)	293, 299
BanII	GRGCYC	2 cut(s)	215, 329
BauI	CACGAG	1 cut(s)	2949
Bbv12I	GWGCWC	2 cut(s)	329, 2920
BbvCI	CCTCAGC	1 cut(s)	866
BbvI	GCAGC	3 cut(s)	144, 1286, 2335
BccI	CCATC	3 cut(s)	479, 1769, 2158
BceAI	ACGGC	6 cut(s)	139, 553, 706, 2696, 3252, 3419
BcgI	CGANNNNNNTGC	4 cut(s)	1900, 1934, 3380, 3414
BciT130I	CCWGG	7 cut(s)	238, 1707, 2237, 2508, 2658, 2826, 2866
BclI	TGATCA	2 cut(s)	1245, 2935
BcnI	CCSGG	4 cut(s)	51, 559, 683, 702
BcoDI	GTCTC	2 cut(s)	134, 1890
BfmI	CTRYAG	3 cut(s)	856, 1616, 3288
BfoI	RGCGCY	3 cut(s)	297, 303, 938
BfuAI	ACCTGC	2 cut(s)	705, 2011
BglII	AGATCT	2 cut(s)	660, 1170
BisI	GCNGC	6 cut(s)	65, 105, 108, 158, 1300, 2349
BlsI	GCNGC	6 cut(s)	66, 106, 109, 159, 1301, 2350
BmcAI	AGTACT	1 cut(s)	1441
Bme18I	GGWCC	5 cut(s)	53, 1181, 1360, 2504, 3081
BmeT110I	CYCGRG	1 cut(s)	984
BmgBI	CACGTC	1 cut(s)	3117
BmgT120I	GGNCC	7 cut(s)	53, 1181, 1360, 1551, 2504, 3081, 3308
BmrI	ACTGGG	3 cut(s)	1281, 1353, 2747
BmsI	GCATC	7 cut(s)	158, 808, 1819, 1841, 2420, 2435, 3292
BmtI	GCTAGC	1 cut(s)	2604
BmuI	ACTGGG	3 cut(s)	1281, 1353, 2747
BpmI	CTGGAG	4 cut(s)	1716, 1982, 2520, 2679
Bpu10I	CCTNAGC	2 cut(s)	866, 1325
Bpu14I	TTCGAA	2 cut(s)	887, 1910
BpuMI	CCSGG	4 cut(s)	51, 559, 683, 702
BsaBI	GATNNNNATC	1 cut(s)	635
BsaHI	GRCGYC	4 cut(s)	110, 126, 294, 300
BsaJI	CCNNGG	3 cut(s)	1184, 2701, 2865
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	6 cut(s)	373, 403, 1866, 1896, 2652, 2682
Bsc4I	CCNNNNNNNGG	7 cut(s)	365, 434, 476, 931, 1954, 2363, 3274
Bse118I	RCCGGY	5 cut(s)	290, 296, 302, 924, 1607
Bse1I	ACTGG	9 cut(s)	225, 1276, 1348, 1699, 1749, 2071, 2742, 2787, 3073
Bse3DI	GCAATG	7 cut(s)	1418, 1541, 1553, 1622, 1629, 2216, 3117
Bse8I	GATNNNNATC	1 cut(s)	635
BseBI	CCWGG	7 cut(s)	238, 1707, 2237, 2508, 2658, 2826, 2866
BseDI	CCNNGG	3 cut(s)	1184, 2701, 2865
BseGI	GGATG	6 cut(s)	955, 1567, 2411, 2752, 2998, 3307
BseJI	GATNNNNATC	1 cut(s)	635
BseLI	CCNNNNNNNGG	7 cut(s)	365, 434, 476, 931, 1954, 2363, 3274
BseMI	GCAATG	7 cut(s)	1418, 1541, 1553, 1622, 1629, 2216, 3117
BseMII	CTCAG	8 cut(s)	189, 438, 763, 857, 1019, 1271, 2193, 2384
BseNI	ACTGG	9 cut(s)	225, 1276, 1348, 1699, 1749, 2071, 2742, 2787, 3073
BseRI	GAGGAG	1 cut(s)	397
BseSI	GKGCMC	3 cut(s)	1596, 2585, 2920
BseX3I	CGGCCG	1 cut(s)	922
BseXI	GCAGC	3 cut(s)	144, 1286, 2335
BseYI	CCCAGC	4 cut(s)	207, 674, 991, 2975
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	3 cut(s)	104, 260, 2479
Bsh1285I	CGRYCG	1 cut(s)	925
BshFI	GGCC	9 cut(s)	924, 1552, 1896, 1947, 2142, 3032, 3267, 3309, 3379
BshNI	GGYRCC	2 cut(s)	293, 299
BsiEI	CGRYCG	1 cut(s)	925
BsiHKAI	GWGCWC	2 cut(s)	329, 2920
BsiHKCI	CYCGRG	1 cut(s)	984
BslFI	GGGAC	4 cut(s)	66, 1194, 3058, 3094
BslI	CCNNNNNNNGG	7 cut(s)	365, 434, 476, 931, 1954, 2363, 3274
BsmAI	GTCTC	2 cut(s)	134, 1890
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	4 cut(s)	66, 1194, 3058, 3094
BsmI	GAATGC	2 cut(s)	1542, 1667
BsnI	GGCC	9 cut(s)	924, 1552, 1896, 1947, 2142, 3032, 3267, 3309, 3379
BsoBI	CYCGRG	1 cut(s)	984
Bsp119I	TTCGAA	2 cut(s)	887, 1910
Bsp1286I	GDGCHC	5 cut(s)	215, 329, 1596, 2585, 2920
BspACI	CCGC	8 cut(s)	65, 104, 107, 137, 306, 1297, 2388, 2479
BspANI	GGCC	9 cut(s)	924, 1552, 1896, 1947, 2142, 3032, 3267, 3309, 3379
BspCNI	CTCAG	8 cut(s)	188, 439, 762, 858, 1018, 1270, 2192, 2383
BspFNI	CGCG	3 cut(s)	104, 260, 2479
BspMAI	CTGCAG	3 cut(s)	860, 1620, 3292
BspMI	ACCTGC	2 cut(s)	705, 2011
BspOI	GCTAGC	1 cut(s)	2604
BspPI	GGATC	5 cut(s)	1473, 1525, 1965, 3191, 3204
BspT104I	TTCGAA	2 cut(s)	887, 1910
BspT107I	GGYRCC	2 cut(s)	293, 299
BsrDI	GCAATG	7 cut(s)	1418, 1541, 1553, 1622, 1629, 2216, 3117
BsrFI	RCCGGY	5 cut(s)	290, 296, 302, 924, 1607
BsrI	ACTGG	9 cut(s)	225, 1276, 1348, 1699, 1749, 2071, 2742, 2787, 3073
BssAI	RCCGGY	5 cut(s)	290, 296, 302, 924, 1607
BssECI	CCNNGG	3 cut(s)	1184, 2701, 2865
BssNAI	GTATAC	1 cut(s)	2475
BssNI	GRCGYC	4 cut(s)	110, 126, 294, 300
BssSI	CACGAG	1 cut(s)	2949
BssT1I	CCWWGG	1 cut(s)	2701
Bst1107I	GTATAC	1 cut(s)	2475
Bst2BI	CACGAG	1 cut(s)	2949
Bst2UI	CCWGG	7 cut(s)	238, 1707, 2237, 2508, 2658, 2826, 2866
Bst4CI	ACNGT	6 cut(s)	1439, 2533, 2609, 2715, 2963, 3358
Bst6I	CTCTTC	2 cut(s)	2317, 2369
BstACI	GRCGYC	4 cut(s)	110, 126, 294, 300
BstAPI	GCANNNNNTGC	1 cut(s)	1624
BstBI	TTCGAA	2 cut(s)	887, 1910
BstEII	GGTNACC	2 cut(s)	28, 2777
BstF5I	GGATG	6 cut(s)	955, 1567, 2411, 2752, 2998, 3307
BstFNI	CGCG	3 cut(s)	104, 260, 2479
BstH2I	RGCGCY	3 cut(s)	297, 303, 938
BstHHI	GCGC	4 cut(s)	104, 296, 302, 937
BstMAI	GTCTC	2 cut(s)	134, 1890
BstMCI	CGRYCG	1 cut(s)	925
BstMWI	GCNNNNNNNGC	9 cut(s)	104, 163, 448, 871, 934, 988, 1030, 1624, 2589
BstNI	CCWGG	7 cut(s)	238, 1707, 2237, 2508, 2658, 2826, 2866
BstNSI	RCATGY	2 cut(s)	2039, 3249
BstPI	GGTNACC	2 cut(s)	28, 2777
BstSFI	CTRYAG	3 cut(s)	856, 1616, 3288
BstSLI	GKGCMC	3 cut(s)	1596, 2585, 2920
BstUI	CGCG	3 cut(s)	104, 260, 2479
BstV1I	GCAGC	3 cut(s)	144, 1286, 2335
BstX2I	RGATCY	6 cut(s)	660, 1170, 1465, 1517, 1957, 3196
BstXI	CCANNNNNNTGG	3 cut(s)	1218, 1548, 2872
BstYI	RGATCY	6 cut(s)	660, 1170, 1465, 1517, 1957, 3196
BstZ17I	GTATAC	1 cut(s)	2475
BstZI	CGGCCG	1 cut(s)	922
BsuRI	GGCC	9 cut(s)	924, 1552, 1896, 1947, 2142, 3032, 3267, 3309, 3379
BtrI	CACGTC	1 cut(s)	3117
BtsCI	GGATG	6 cut(s)	955, 1567, 2411, 2752, 2998, 3307
BtsI	GCAGTG	3 cut(s)	229, 2877, 3351
BveI	ACCTGC	2 cut(s)	705, 2011
CaiI	CAGNNNCTG	1 cut(s)	231
CfoI	GCGC	4 cut(s)	104, 296, 302, 937
Cfr10I	RCCGGY	5 cut(s)	290, 296, 302, 924, 1607
Cfr13I	GGNCC	7 cut(s)	53, 1181, 1360, 1551, 2504, 3081, 3308
CseI	GACGC	6 cut(s)	99, 115, 155, 266, 880, 1955
CsiI	ACCWGGT	2 cut(s)	236, 2235
Csp6I	GTAC	5 cut(s)	730, 1440, 2300, 2945, 3354
CviQI	GTAC	5 cut(s)	730, 1440, 2300, 2945, 3354
DinI	GGCGCC	2 cut(s)	295, 301
EaeI	YGGCCR	4 cut(s)	922, 1945, 2140, 3030
EagI	CGGCCG	1 cut(s)	922
Eam1104I	CTCTTC	2 cut(s)	2317, 2369
EarI	CTCTTC	2 cut(s)	2317, 2369
EciI	GGCGGA	2 cut(s)	152, 321
Ecl136II	GAGCTC	1 cut(s)	327
EclXI	CGGCCG	1 cut(s)	922
Eco130I	CCWWGG	1 cut(s)	2701
Eco147I	AGGCCT	1 cut(s)	3379
Eco24I	GRGCYC	2 cut(s)	215, 329
Eco32I	GATATC	1 cut(s)	2652
Eco47I	GGWCC	5 cut(s)	53, 1181, 1360, 2504, 3081
Eco52I	CGGCCG	1 cut(s)	922
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	6 cut(s)	95, 146, 914, 1187, 1349, 3033
Eco88I	CYCGRG	1 cut(s)	984
Eco91I	GGTNACC	2 cut(s)	28, 2777
EcoICRI	GAGCTC	1 cut(s)	327
EcoO109I	RGGNCCY	4 cut(s)	53, 1360, 3081, 3308
EcoO65I	GGTNACC	2 cut(s)	28, 2777
EcoRI	GAATTC	2 cut(s)	547, 3278
EcoRII	CCWGG	7 cut(s)	236, 1705, 2235, 2506, 2656, 2824, 2864
EcoRV	GATATC	1 cut(s)	2652
EcoT14I	CCWWGG	1 cut(s)	2701
EcoT22I	ATGCAT	3 cut(s)	1669, 1834, 3010
EcoT38I	GRGCYC	2 cut(s)	215, 329
EgeI	GGCGCC	2 cut(s)	295, 301
EheI	GGCGCC	2 cut(s)	295, 301
ErhI	CCWWGG	1 cut(s)	2701
Esp3I	CGTCTC	1 cut(s)	134
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 3266, 3298
FaqI	GGGAC	4 cut(s)	66, 1194, 3058, 3094
FbaI	TGATCA	2 cut(s)	1245, 2935
FblI	GTMKAC	2 cut(s)	2474, 2861
Fnu4HI	GCNGC	6 cut(s)	65, 105, 108, 158, 1300, 2349
FokI	GGATG	6 cut(s)	962, 1574, 2398, 2739, 3005, 3314
FriOI	GRGCYC	2 cut(s)	215, 329
Fsp4HI	GCNGC	6 cut(s)	65, 105, 108, 158, 1300, 2349
GlaI	GCGC	4 cut(s)	103, 295, 301, 936
GluI	GCNGC	6 cut(s)	65, 105, 108, 158, 1300, 2349
GsaI	CCCAGC	4 cut(s)	211, 678, 995, 2979
GsuI	CTGGAG	4 cut(s)	1716, 1982, 2520, 2679
HaeII	RGCGCY	3 cut(s)	297, 303, 938
HaeIII	GGCC	9 cut(s)	924, 1552, 1896, 1947, 2142, 3032, 3267, 3309, 3379
HgaI	GACGC	6 cut(s)	99, 115, 155, 266, 880, 1955
HhaI	GCGC	4 cut(s)	104, 296, 302, 937
Hin1I	GRCGYC	4 cut(s)	110, 126, 294, 300
Hin6I	GCGC	4 cut(s)	102, 294, 300, 935
HinP1I	GCGC	4 cut(s)	102, 294, 300, 935
HindIII	AAGCTT	4 cut(s)	791, 1307, 1337, 1688
Hpy166II	GTNNAC	9 cut(s)	580, 688, 730, 2026, 2092, 2475, 2862, 2918, 2945
Hpy8I	GTNNAC	9 cut(s)	580, 688, 730, 2026, 2092, 2475, 2862, 2918, 2945
Hpy99I	CGWCG	5 cut(s)	115, 131, 260, 1033, 3405
HpyCH4III	ACNGT	6 cut(s)	1439, 2533, 2609, 2715, 2963, 3358
HpyCH4IV	ACGT	1 cut(s)	3116
HpyF10VI	GCNNNNNNNGC	9 cut(s)	104, 163, 448, 871, 934, 988, 1030, 1624, 2589
HpySE526I	ACGT	1 cut(s)	3116
Hsp92I	GRCGYC	4 cut(s)	110, 126, 294, 300
HspAI	GCGC	4 cut(s)	102, 294, 300, 935
KasI	GGCGCC	2 cut(s)	293, 299
KflI	GGGWCCC	1 cut(s)	53
KroI	GCCGGC	3 cut(s)	296, 302, 924
KroNI	GCCGGC	3 cut(s)	298, 304, 926
Ksp22I	TGATCA	2 cut(s)	1245, 2935
LmnI	GCTCC	9 cut(s)	332, 426, 698, 1087, 1348, 1697, 1963, 2589, 2630
Lsp1109I	GCAGC	3 cut(s)	144, 1286, 2335
LweI	GCATC	7 cut(s)	158, 808, 1819, 1841, 2420, 2435, 3292
MabI	ACCWGGT	2 cut(s)	236, 2235
MaeII	ACGT	1 cut(s)	3116
MaeIII	GTNAC	7 cut(s)	28, 114, 227, 2167, 2527, 2764, 2777
MfeI	CAATTG	2 cut(s)	742, 2400
MflI	RGATCY	6 cut(s)	660, 1170, 1465, 1517, 1957, 3196
MhlI	GDGCHC	5 cut(s)	215, 329, 1596, 2585, 2920
MlsI	TGGCCA	3 cut(s)	1947, 2142, 3032
MluNI	TGGCCA	3 cut(s)	1947, 2142, 3032
Mly113I	GGCGCC	2 cut(s)	294, 300
MlyI	GAGTC	5 cut(s)	179, 255, 638, 1070, 2670
Mox20I	TGGCCA	3 cut(s)	1947, 2142, 3032
Mph1103I	ATGCAT	3 cut(s)	1669, 1834, 3010
MreI	CGCCGGCG	2 cut(s)	296, 302
MroNI	GCCGGC	3 cut(s)	296, 302, 924
MroXI	GAANNNNTTC	2 cut(s)	906, 1644
MscI	TGGCCA	3 cut(s)	1947, 2142, 3032
MseI	TTAA	8 cut(s)	474, 612, 1038, 1293, 1752, 1899, 2273, 3003
MslI	CAYNNNNRTG	4 cut(s)	1546, 2787, 2964, 3244
Msp20I	TGGCCA	3 cut(s)	1947, 2142, 3032
MspA1I	CMGCKG	2 cut(s)	67, 1299
MunI	CAATTG	2 cut(s)	742, 2400
Mva1269I	GAATGC	2 cut(s)	1542, 1667
MvaI	CCWGG	7 cut(s)	238, 1707, 2237, 2508, 2658, 2826, 2866
MvnI	CGCG	3 cut(s)	104, 260, 2479
MwoI	GCNNNNNNNGC	9 cut(s)	104, 163, 448, 871, 934, 988, 1030, 1624, 2589
NaeI	GCCGGC	3 cut(s)	298, 304, 926
NarI	GGCGCC	2 cut(s)	294, 300
NciI	CCSGG	4 cut(s)	51, 559, 683, 702
NgoMIV	GCCGGC	3 cut(s)	296, 302, 924
NheI	GCTAGC	1 cut(s)	2600
NmeAIII	GCCGAG	1 cut(s)	900
NmuCI	GTSAC	5 cut(s)	28, 114, 227, 2167, 2764
NsiI	ATGCAT	3 cut(s)	1669, 1834, 3010
NspI	RCATGY	2 cut(s)	2039, 3249
NspV	TTCGAA	2 cut(s)	887, 1910
PaeR7I	CTCGAG	1 cut(s)	984
PceI	AGGCCT	1 cut(s)	3379
PcsI	WCGNNNNNNNCGW	1 cut(s)	3265
PctI	GAATGC	2 cut(s)	1542, 1667
PdiI	GCCGGC	3 cut(s)	298, 304, 926
PdmI	GAANNNNTTC	2 cut(s)	906, 1644
PflFI	GACNNNGTC	1 cut(s)	647
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	6 cut(s)	66, 106, 109, 159, 1301, 2350
PleI	GAGTC	5 cut(s)	179, 254, 638, 1070, 2669
PluTI	GGCGCC	2 cut(s)	297, 303
PpsI	GAGTC	5 cut(s)	179, 254, 638, 1070, 2669
PpuMI	RGGWCCY	3 cut(s)	53, 1360, 3081
Psp124BI	GAGCTC	1 cut(s)	329
Psp5II	RGGWCCY	3 cut(s)	53, 1360, 3081
Psp6I	CCWGG	7 cut(s)	236, 1705, 2235, 2506, 2656, 2824, 2864
PspEI	GGTNACC	2 cut(s)	28, 2777
PspFI	CCCAGC	4 cut(s)	207, 674, 991, 2975
PspGI	CCWGG	7 cut(s)	236, 1705, 2235, 2506, 2656, 2824, 2864
PspPI	GGNCC	7 cut(s)	53, 1181, 1360, 1551, 2504, 3081, 3308
PspPPI	RGGWCCY	3 cut(s)	53, 1360, 3081
PstI	CTGCAG	3 cut(s)	860, 1620, 3292
PstNI	CAGNNNCTG	1 cut(s)	231
PsuI	RGATCY	6 cut(s)	660, 1170, 1465, 1517, 1957, 3196
PsyI	GACNNNGTC	1 cut(s)	647
RsaI	GTAC	5 cut(s)	731, 1441, 2301, 2946, 3355
RsaNI	GTAC	5 cut(s)	730, 1440, 2300, 2945, 3354
RseI	CAYNNNNRTG	4 cut(s)	1546, 2787, 2964, 3244
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	8 cut(s)	474, 612, 1038, 1293, 1752, 1899, 2273, 3003
SatI	GCNGC	6 cut(s)	65, 105, 108, 158, 1300, 2349
Sau96I	GGNCC	7 cut(s)	53, 1181, 1360, 1551, 2504, 3081, 3308
ScaI	AGTACT	1 cut(s)	1441
SchI	GAGTC	5 cut(s)	179, 255, 638, 1070, 2670
SduI	GDGCHC	5 cut(s)	215, 329, 1596, 2585, 2920
SexAI	ACCWGGT	2 cut(s)	236, 2235
SfaNI	GCATC	7 cut(s)	158, 808, 1819, 1841, 2420, 2435, 3292
SfcI	CTRYAG	3 cut(s)	856, 1616, 3288
SfoI	GGCGCC	2 cut(s)	295, 301
Sfr274I	CTCGAG	1 cut(s)	984
SfuI	TTCGAA	2 cut(s)	887, 1910
SgrAI	CRCCGGYG	2 cut(s)	296, 302
SinI	GGWCC	5 cut(s)	53, 1181, 1360, 2504, 3081
SlaI	CTCGAG	1 cut(s)	984
SmiMI	CAYNNNNRTG	4 cut(s)	1546, 2787, 2964, 3244
SseBI	AGGCCT	1 cut(s)	3379
SsiI	CCGC	8 cut(s)	65, 104, 107, 137, 306, 1297, 2388, 2479
SspDI	GGCGCC	2 cut(s)	293, 299
SspI	AATATT	1 cut(s)	2983
SstI	GAGCTC	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	3379
StyI	CCWWGG	1 cut(s)	2701
TaaI	ACNGT	6 cut(s)	1439, 2533, 2609, 2715, 2963, 3358
TaiI	ACGT	1 cut(s)	3119
TaqII	GACCGA	2 cut(s)	205, 1198
TatI	WGTACW	3 cut(s)	729, 1439, 2299
TauI	GCSGC	3 cut(s)	67, 107, 110
Tru1I	TTAA	8 cut(s)	474, 612, 1038, 1293, 1752, 1899, 2273, 3003
Tru9I	TTAA	8 cut(s)	474, 612, 1038, 1293, 1752, 1899, 2273, 3003
TseFI	GTSAC	5 cut(s)	28, 114, 227, 2167, 2764
TseI	GCWGC	3 cut(s)	157, 1299, 2348
Tsp45I	GTSAC	5 cut(s)	28, 114, 227, 2167, 2764
TspDTI	ATGAA	8 cut(s)	818, 1118, 1301, 1407, 1518, 2205, 2708, 3201
TspGWI	ACGGA	6 cut(s)	133, 158, 257, 324, 348, 685
Tth111I	GACNNNGTC	1 cut(s)	647
VneI	GTGCAC	1 cut(s)	2916
VpaK11BI	GGWCC	5 cut(s)	53, 1181, 1360, 2504, 3081
XceI	RCATGY	2 cut(s)	2039, 3249
XcmI	CCANNNNNNNNNTGG	3 cut(s)	64, 2150, 3065
XhoI	CTCGAG	1 cut(s)	984
XmiI	GTMKAC	2 cut(s)	2474, 2861
XmnI	GAANNNNTTC	2 cut(s)	906, 1644
ZrmI	AGTACT	1 cut(s)	1441
Zsp2I	ATGCAT	3 cut(s)	1669, 1834, 3010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.