Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010808

Physical Location & Seq

Genomic Coordinates Reverse (-)

64920964 .. 64924391

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0518000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAGGATTTGCCTCCGCCACCTCGTATCGTACCACCCAATGTGAAGCCAGAAGTTGTGGCTCTGGCTCCTCCTAAGCACTCTATTATGGTTAGGCCGCGTGGGAGTGGAACCACAGGGCAGCGCATACAATTGAGCCCTAACCATTTCAAAGTTTCTGTGAAGAATCCAGATGCTGTGTTCTACCGGTACTATGTTCTGATAACTTATGAAGATAAGACTATAAGAGACCTGTTGAAGGCATGGGACTTGGGAGAAAGCTGGTGGATAAGCTCTATCAAACATACTCTTCAGAGTTTGCTGGTAAAAAGTTTGCATATGATGGGGACAAAGCTTTATACACAGTCGTCGGTCCTCTCCCGCGAAACAAGCTTGAGTTCACAGTTGTTTTGGAGGAGTCATTTGCAAAGAGGAGCTGAAGTAGACAACACTCAGGATGCATTGAGAGTGCTTGATATTATTCTACGGCAGAAAGCAGCTAAGATGGGATGCCTTCTAGTACGACAGTCATTCTTCCATGATGACTCCATGAACTTTGTTGAGATTGGAGGAGGTGTGACTGGTGTCCGGGGTTTTCATTCCAGTTTCCGTCCAACTCAGGGGGGCATGTCCTTGAATATGGATGTATCTACAACAATGATTGTGACGCCTGGACTTGTTATTGATTTTCTGTTACCCAACCAGGGTATACGAGAACCCCGCTACATTGGCTGGGTAAAGGCCAAAAGAATGCTGAAAAATATGAGAATTATAACGAGACACTGTAACATCGACTGCAAAATCACTGGGTTAATTGAGAAGACCTGCAATAATCAGTTGTTTAATCTGAAGCTAAGGAGTGGTGATGGCACGGGTGAGGGGGAAACTGTAGAGATTACGACTTCAAGAAATTACCGCTATTATGAGGATCCTGTGTTTGCTGAATGTGGTATATCTATAGAGAAGCAACTGATTCAGATGGATGGCCGTATTCTTGAGACTCCAAAGTTAAAGGTAGGTAGCAGTGAGGACATGATGCCCTTTAAGGGAGGATGGAACTTCAAAGGAAAGGCTAAGCTCCAAGAACCACCTGAGTTCATTCTCTGTGTCATACCAAAGAAAGGTTCTGATATCTATGCTGATGATGGTAATGATCCTCTTATATCAAGGTACAATGCAGCTGTTAGAACACAATCTCCTATGGTGGAGATGATTGATGGTCTATACAAGCCACTTCCAAATGGAAATGTTGATAGTATTATCATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

416

Amino Acids

46.92

Weight (kDa)

9.11

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoL1	PF08699	167 - 215	3.7e-18	Argonaute linker 1 domain
ArgoL2	PF16488	297 - 331	7.1e-08	Argonaute linker 2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02130 AT3G02130
fragaria_vesca	FvH4_6g46830
malus_domestica	MD09G1067100.v1.1 MD17G1060000.v1.1 MD17G1060100.v1.1
prunus_persica	Prupe.3G254600_v2.0.a1
pyrus_communis	pycom111g05640 pycom17g05970 pycom17g05980
rosa_chinensis	RchiOBHm_Chr2g0165821
rosa_laevigata	RLG00000021558
rosa_multiflora	Rmu_sc0003227.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085480
rosa_rugosa	Rorug02G0518000
rosa_samantha	Rh2AG583700 Rh2BG595700 Rh2CG566600 Rh2DG605500
rosa_wichuraiana	Rw2G048670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	752
Acc36I	ACCTGC	1 cut(s)	812
AccI	GTMKAC	2 cut(s)	423, 688
AccII	CGCG	2 cut(s)	100, 363
AciI	CCGC	5 cut(s)	17, 98, 361, 700, 895
AclWI	GGATC	3 cut(s)	902, 915, 1127
AcoI	YGGCCR	1 cut(s)	964
AcuI	CTGAAG	3 cut(s)	275, 438, 848
AcyI	GRCGYC	1 cut(s)	647
AfaI	GTAC	4 cut(s)	33, 191, 501, 1151
AfiI	CCNNNNNNNGG	5 cut(s)	238, 599, 683, 1025, 1100
AgeI	ACCGGT	1 cut(s)	186
AgsI	TTSAA	5 cut(s)	151, 238, 616, 885, 1042
AjnI	CCWGG	2 cut(s)	649, 681
AjuI	GAANNNNNNNTTGG	2 cut(s)	1087, 1119
AloI	GAACNNNNNNTCC	2 cut(s)	1159, 1191
AluBI	AGCT	9 cut(s)	261, 273, 334, 372, 416, 479, 832, 1057, 1160
AluI	AGCT	9 cut(s)	261, 273, 334, 372, 416, 479, 832, 1057, 1160
Alw26I	GTCTC	3 cut(s)	222, 751, 971
AlwI	GGATC	3 cut(s)	902, 915, 1127
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	95, 720, 964
ApeKI	GCWGC	3 cut(s)	121, 476, 1157
AsiGI	ACCGGT	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	854, 866
AvaII	GGWCC	1 cut(s)	352
BamHI	GGATCC	1 cut(s)	907
BanII	GRGCYC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	806
BbvI	GCAGC	3 cut(s)	133, 488, 1169
BccI	CCATC	8 cut(s)	316, 478, 839, 952, 956, 1026, 1118, 1190
BceAI	ACGGC	2 cut(s)	482, 951
BciT130I	CCWGG	2 cut(s)	651, 683
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	3 cut(s)	222, 751, 971
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	2 cut(s)	867, 936
BfuAI	ACCTGC	1 cut(s)	812
BisI	GCNGC	4 cut(s)	98, 122, 477, 1158
BlpI	GCTNAGC	1 cut(s)	1053
BlsI	GCNGC	4 cut(s)	99, 123, 478, 1159
Bme1390I	CCNGG	3 cut(s)	569, 651, 683
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	3 cut(s)	69, 112, 909
BmrFI	CCNGG	3 cut(s)	569, 651, 683
BmrI	ACTGGG	1 cut(s)	795
BmsI	GCATC	4 cut(s)	163, 427, 479, 1005
BmuI	ACTGGG	1 cut(s)	795
BoxI	GACNNNNGTC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	806
Bpu10I	CCTNAGC	2 cut(s)	75, 833
Bpu1102I	GCTNAGC	1 cut(s)	1053
BpuEI	CTTGAG	2 cut(s)	394, 995
BpuMI	CCSGG	1 cut(s)	569
BsaHI	GRCGYC	1 cut(s)	647
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	568, 682
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	6 cut(s)	405, 435, 540, 570, 1159, 1189
Bsc4I	CCNNNNNNNGG	5 cut(s)	238, 599, 683, 1025, 1100
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	3 cut(s)	565, 582, 790
BseBI	CCWGG	2 cut(s)	651, 683
BseDI	CCNNGG	2 cut(s)	568, 682
BseGI	GGATG	5 cut(s)	442, 494, 628, 967, 1037
BseLI	CCNNNNNNNGG	5 cut(s)	238, 599, 683, 1025, 1100
BseMII	CTCAG	3 cut(s)	446, 611, 1062
BseNI	ACTGG	3 cut(s)	565, 582, 790
BseRI	GAGGAG	4 cut(s)	60, 409, 426, 564
BseXI	GCAGC	3 cut(s)	133, 488, 1169
BseYI	CCCAGC	1 cut(s)	711
Bsh1236I	CGCG	2 cut(s)	100, 363
BshFI	GGCC	3 cut(s)	97, 722, 966
BshTI	ACCGGT	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	187, 568
BslFI	GGGAC	2 cut(s)	260, 340
BslI	CCNNNNNNNGG	5 cut(s)	238, 599, 683, 1025, 1100
BsmAI	GTCTC	3 cut(s)	222, 751, 971
BsmFI	GGGAC	2 cut(s)	260, 340
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	3 cut(s)	97, 722, 966
Bso31I	GGTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	907, 1132
Bsp1720I	GCTNAGC	1 cut(s)	1053
BspACI	CCGC	5 cut(s)	17, 98, 361, 700, 895
BspANI	GGCC	3 cut(s)	97, 722, 966
BspCNI	CTCAG	3 cut(s)	445, 610, 1063
BspFNI	CGCG	2 cut(s)	100, 363
BspLI	GGNNCC	3 cut(s)	69, 112, 909
BspMI	ACCTGC	1 cut(s)	812
BspPI	GGATC	3 cut(s)	902, 915, 1127
BspTNI	GGTCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	186
BsrI	ACTGG	3 cut(s)	565, 582, 790
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	568, 682
BssMI	GATC	2 cut(s)	907, 1132
BssNAI	GTATAC	1 cut(s)	689
BssNI	GRCGYC	1 cut(s)	647
Bst1107I	GTATAC	1 cut(s)	689
Bst2UI	CCWGG	2 cut(s)	651, 683
Bst4CI	ACNGT	5 cut(s)	345, 384, 507, 764, 868
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	647
BstDEI	CTNAG	7 cut(s)	75, 432, 480, 597, 833, 1053, 1071
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	5 cut(s)	442, 494, 628, 967, 1037
BstFNI	CGCG	2 cut(s)	100, 363
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	2 cut(s)	910, 1135
BstMAI	GTCTC	3 cut(s)	222, 751, 971
BstMBI	GATC	2 cut(s)	907, 1132
BstMWI	GCNNNNNNNGC	2 cut(s)	369, 708
BstNI	CCWGG	2 cut(s)	651, 683
BstNSI	RCATGY	1 cut(s)	610
BstPAI	GACNNNNGTC	1 cut(s)	563
BstSCI	CCNGG	3 cut(s)	567, 649, 681
BstSFI	CTRYAG	2 cut(s)	867, 936
BstUI	CGCG	2 cut(s)	100, 363
BstV1I	GCAGC	3 cut(s)	133, 488, 1169
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	907
BstZ17I	GTATAC	1 cut(s)	689
BsuRI	GGCC	3 cut(s)	97, 722, 966
BtsCI	GGATG	5 cut(s)	442, 494, 628, 967, 1037
BtsI	GCAGTG	1 cut(s)	1009
BtsIMutI	CAGTG	3 cut(s)	760, 783, 1009
BveI	ACCTGC	1 cut(s)	812
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	352
CseI	GACGC	1 cut(s)	655
Csp6I	GTAC	4 cut(s)	32, 190, 500, 1150
CspAI	ACCGGT	1 cut(s)	186
CviAII	CATG	6 cut(s)	243, 518, 529, 607, 1012, 1243
CviQI	GTAC	4 cut(s)	32, 190, 500, 1150
DdeI	CTNAG	7 cut(s)	75, 432, 480, 597, 833, 1053, 1071
DpnI	GATC	2 cut(s)	909, 1134
DpnII	GATC	2 cut(s)	907, 1132
EaeI	YGGCCR	1 cut(s)	964
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	1111
Eco47I	GGWCC	1 cut(s)	352
Eco57I	CTGAAG	3 cut(s)	275, 438, 848
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	649, 681
EcoRV	GATATC	1 cut(s)	1111
EcoT22I	ATGCAT	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	6 cut(s)	246, 521, 532, 610, 1015, 1246
FaqI	GGGAC	2 cut(s)	260, 340
FatI	CATG	6 cut(s)	242, 517, 528, 606, 1011, 1242
FauI	CCCGC	2 cut(s)	368, 707
FauNDI	CATATG	1 cut(s)	318
FblI	GTMKAC	2 cut(s)	423, 688
Fnu4HI	GCNGC	4 cut(s)	98, 122, 477, 1158
FokI	GGATG	5 cut(s)	449, 501, 635, 974, 1044
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	4 cut(s)	98, 122, 477, 1158
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	4 cut(s)	98, 122, 477, 1158
GsaI	CCCAGC	1 cut(s)	715
HaeIII	GGCC	3 cut(s)	97, 722, 966
HapII	CCGG	2 cut(s)	187, 568
HgaI	GACGC	1 cut(s)	655
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	1 cut(s)	647
Hin1II	CATG	6 cut(s)	246, 521, 532, 610, 1015, 1246
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HindIII	AAGCTT	2 cut(s)	332, 370
HinfI	GANTC	5 cut(s)	166, 397, 524, 952, 979
HpaII	CCGG	2 cut(s)	187, 568
HphI	GGTGA	2 cut(s)	854, 866
Hpy166II	GTNNAC	3 cut(s)	380, 424, 689
Hpy188I	TCNGA	5 cut(s)	201, 294, 828, 957, 1108
Hpy188III	TCNNGA	4 cut(s)	170, 434, 885, 974
Hpy8I	GTNNAC	3 cut(s)	380, 424, 689
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	232, 503
HpyCH4III	ACNGT	5 cut(s)	345, 384, 507, 764, 868
HpyCH4V	TGCA	6 cut(s)	316, 406, 440, 777, 807, 1157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	369, 708
HpyF3I	CTNAG	7 cut(s)	75, 432, 480, 597, 833, 1053, 1071
Hsp92I	GRCGYC	1 cut(s)	647
Hsp92II	CATG	6 cut(s)	246, 521, 532, 610, 1015, 1246
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	907, 1132
LmnI	GCTCC	3 cut(s)	73, 413, 1062
Lsp1109I	GCAGC	3 cut(s)	133, 488, 1169
LweI	GCATC	4 cut(s)	163, 427, 479, 1005
MaeI	CTAG	1 cut(s)	497
MaeIII	GTNAC	4 cut(s)	556, 643, 672, 764
MalI	GATC	2 cut(s)	909, 1134
MboI	GATC	2 cut(s)	907, 1132
MboII	GAAGA	5 cut(s)	175, 224, 281, 505, 811
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	1 cut(s)	907
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	4 cut(s)	131, 747, 792, 889
MlyI	GAGTC	3 cut(s)	406, 518, 973
MmeI	TCCRAC	1 cut(s)	617
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	4 cut(s)	791, 822, 989, 1023
MspA1I	CMGCKG	1 cut(s)	1160
MspI	CCGG	2 cut(s)	187, 568
MspR9I	CCNGG	3 cut(s)	569, 651, 683
MunI	CAATTG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	735
MvaI	CCWGG	2 cut(s)	651, 683
MvnI	CGCG	2 cut(s)	100, 363
MwoI	GCNNNNNNNGC	2 cut(s)	369, 708
NciI	CCSGG	1 cut(s)	569
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	2 cut(s)	907, 1132
NlaIII	CATG	6 cut(s)	246, 521, 532, 610, 1015, 1246
NlaIV	GGNNCC	3 cut(s)	69, 112, 909
NmuCI	GTSAC	2 cut(s)	556, 643
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	610
PctI	GAATGC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	166, 952
PinAI	ACCGGT	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	99, 123, 478, 1159
PleI	GAGTC	3 cut(s)	405, 518, 973
PpsI	GAGTC	3 cut(s)	405, 518, 973
PshAI	GACNNNNGTC	1 cut(s)	563
PsiI	TTATAA	1 cut(s)	752
Psp6I	CCWGG	2 cut(s)	649, 681
PspFI	CCCAGC	1 cut(s)	711
PspGI	CCWGG	2 cut(s)	649, 681
PspN4I	GGNNCC	3 cut(s)	69, 112, 909
PspPI	GGNCC	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	907
PvuII	CAGCTG	1 cut(s)	1160
RsaI	GTAC	4 cut(s)	33, 191, 501, 1151
RsaNI	GTAC	4 cut(s)	32, 190, 500, 1150
SaqAI	TTAA	4 cut(s)	791, 822, 989, 1023
SatI	GCNGC	4 cut(s)	98, 122, 477, 1158
Sau3AI	GATC	2 cut(s)	907, 1132
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	3 cut(s)	406, 518, 973
ScrFI	CCNGG	3 cut(s)	569, 651, 683
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	4 cut(s)	163, 427, 479, 1005
SfcI	CTRYAG	2 cut(s)	867, 936
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	373, 974
SmoI	CTYRAG	2 cut(s)	373, 974
Sse9I	AATT	4 cut(s)	131, 747, 792, 889
SsiI	CCGC	5 cut(s)	17, 98, 361, 700, 895
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	567, 649, 681
TaaI	ACNGT	5 cut(s)	345, 384, 507, 764, 868
TaqI	TCGA	1 cut(s)	771
TaqII	GACCGA	1 cut(s)	340
TasI	AATT	4 cut(s)	131, 747, 792, 889
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	2 cut(s)	166, 952
Tru1I	TTAA	4 cut(s)	791, 822, 989, 1023
Tru9I	TTAA	4 cut(s)	791, 822, 989, 1023
TscAI	CASTG	3 cut(s)	767, 790, 1009
TseFI	GTSAC	2 cut(s)	556, 643
TseI	GCWGC	3 cut(s)	121, 476, 1157
Tsp45I	GTSAC	2 cut(s)	556, 643
TspDTI	ATGAA	4 cut(s)	225, 545, 566, 1066
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	3 cut(s)	767, 790, 1009
VpaK11BI	GGWCC	1 cut(s)	352
XagI	CCTNNNNNAGG	1 cut(s)	236
XceI	RCATGY	1 cut(s)	610
XmiI	GTMKAC	2 cut(s)	423, 688
XspI	CTAG	1 cut(s)	497
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.