Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010808

Physical Location & Seq

Genomic Coordinates Reverse (-)

81692406 .. 81695831

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG583700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3426 bp

ATGGGTGTTCGATCTTCTTCCTCTCCGGTCACCAATTTCCTCTCTTTTCCGGGACCCACTTCGCCGCTGGTTCTGAAGCTCGTTTTGGTGCTGTGGGTGTGCGCGGCGGCGCCACAGAACGGCGTCGTTTCGGCGGAGACGGACGCATCGGTGCTGCTTCAGCTCAAAGGCTCAGTCTTGGACTCGGAAGGGTTGCTTTCCAGCTGGGGCTGGGTCAATTCCAGTCACTGCACCTGGTCCGGAGTCTTGTGCGACGCGAATTTCCGTGTCGTTTCGCTCAACATTACCGGCGGCGGCGGAGGTAAATCGAAATCGAGCTCCTTTCCGTGCGTTGATTTTGGTCAGTTTCCGTTTTATGGTTTGGGGATTAGGAGGAGTTGTGTGGGTGGTAGTGGGAGGTTGGTGGGGAAGCTCCCTTCTGTGATTGGGAAGCTCACTGAGCTAAAGGTCTTGTCTTTGCCCTTTAATGGTTTTGATGGTGAGATTCCTGTTGAAATTTGGGGCATGGAGAACCTAGAGGTCGTTGATCTTGAAGGAAATTCGATCACCGGGTCTTTGCCGTTTCGGGTGAACCCGAATTTGAGGGTTCTGAATCTTGGGTTTAATAAGATTCACGGCGAGATACCGATCTTTGACTCTGTCAGCTTAGAGATCTTGAATTTAGCTGGGAACCGGGTGAACGGCTCCGTCCCGGGTTTCGTTGGCAGGTTGGAAGGGGTGTACTTGTCATACAATTGGCTCAGTGGGGATATTCCTAGTGAGATTGGAGATAGTTGTGGCAAGCTTGAGCATCTTGATTTGTCTGGTAACTTCTTGGTTCATAAGATTCCGAGTAGTTTGGGGAACTGCAGTCGGCTGAGGACGCTGTTGTTGTATTCGAATATGTTGGAAGAAGGTATTCCGGCTGAACTCGGCCGGCTTCAGGCGCTTGAGGTCGTGGATGTGTCGAGGAATAGCTTGAGTGGTTCGCTGCCTCGAGAGCTGGGGAATTGTTCTCAGTTGTCTGTGCTTGTGCTTTCGTCGCTGTTTAATCCCCTTCCCCTTGTGCGAGCCAATTATACAGATGACTCGTTGTTGGAGCAGTTGAGTTCCATGAATGATGACTTCAATTACTTTCAAGGCTCAATGCCGAAGGAGATTACAAGCCTTCCAAAGCTGAAGATCTTGTGGGGACCGAGAGCAAGTATTGAGGGCAGCTTTCCAAGTGATTGGGGTGCTTGTGAGAACTTGGAAATGATCAATTTGGCTCAGAATTTTTTTACTGGGGGAATTTCTGGTGGGCTTAACCGCTGCCAGAAGCTTCATTTTCTTGACCTAAGCACTAACAAGCTTACTGGGGAGCTTGTTCAGGTTCTTCAGGTTCCTTGTATGACTATGCTTGATGTCAGTGGAAATTTCTTGTCAGGTTCATTGCCTGAATATGCTAACAGTACTTGTCGTCCTGTTTCCTCTGTGGATCTTTCTTTCAAAGATGATGATTTTTCCTCGCCCTATGAAGCATTTTTTGGATCTAAAGCTCAAGCTGGAATGCCATTGCAATGGCCCACAGAGGATGATGTTGTTGTAGTGATTCACAACTTTGGGCACAATAATTTTACTGGCACTCTGCAGTCATTGCCCATTGCACCCGAAAGGTTTCAGAAGAAAATTCTGTATGCATTCCTTGTTGGAGAAAACAAGCTTACTGGAGCATTTCCAGGTAATTTGTTTGGGAAGTGTCAGGGATTAGATTCACTGGTTGTTAATGTAAGCAACAACAGGTTAGATGGGAAGATTCCAACTGAAATTGGTAAAATGTGCAATTCTCTCAAGTTTTTAGATGCATCTCTGAATCGGATTGTGGGTTCCATTCCTGCTAGTTTTGGAGAATTGGTGTCTCTTGCTGGCCTTAACTTGAGTTCAAACAGGTTGCAAGGTCAAATTCCGACCACTCTTGGCCAGATAAGGGATCTGGAGCATCTTTCTTTGTCTGGTAATAACCTTACAGGTGTTATTCCTGCTAGTTTGGGGCAGCTTTACTCCTTGCATGTGCTTGAGCTTTCTCGGAACTCTCTCACTGGTGAGATACCAAACGATCTTGTAAACTTGCGAAACTTGAGAGTTCTTCTGCTGGACAAAAATAAACTTTCTGGCCAGATTCCATCTGGTTTGGCAAATGTGACCACACTCTCAGCCTTCAATGTGTCTTACAATAACTTCTCTGGTTCATTGCCTTTGAACAATAACCTGGTGAATTGCAATACTGCTATTGGAAACCCCCATTTAAGTTCCTGTCCCTCACTTTCTCAAGTACAGCCAGCTAATACTCAAGGAAGAGTTGGCGATTCAGAACCTTACGCTGCTTCACCATTGGTAGAAACTCAGAAGAGTGCTGGTAGCGGTTTCAATTCAATTGAAATAGCATCCATTACATCTGCATCTGCCATTGTTTTAGTGCTTCTAGCTCTTGTTGTTCTATTCTTGTATACGCGGAAGTGGAATCGGAAGTCTGGAGGTCCAGGCTCTACTAGGAAGGAAGTTACTGTTTTCACAAACATTGGGGTTCCGCTGACCTTTGATAGTGTTGTTCGGGGCACGGGGAGCTTCAATGCTAGCAACTGTATTGGGAATGGAGGTTTTGGAGCAACTTACAAGGCAGAGATATCACCTGGAGTCCTAGTGGCTATAAAACGGCTTGCTGTTGGAAGGTTCCAAGGAGTGCAACAGTTTCATGCAGAAATCAAAACTCTGGGGAGGCTTCGACATCCAAATCTGGTCACTTTACTAGGTTACCATGCCAGTGAAACAGAGATGTTCCTAATATATAATTATTTTCCTGGTGGTAATCTGGAAAAATTTATTCAGGAAAGGTCTACCAGGGCTGTGGATTGGAAGATACTTCACAAGATTGCTTTGGACATAGCCCGTGCACTTGCCTACCTACATGATCAGTGTGTACCTCGTGTCCTTCACCGTGATGTCAAGCCCAGCAATATTTTGTTGGATGATGATTTTAATGCATATCTATCAGACTTTGGTTTGGCCAGACTTCTTGGGACTTCAGAAACCCATGCTACTACTGGTGTAGCAGGGACCTTTGGATATGTTGCCCCAGAATATGCAATGACGTGTCGTGTTTCAGATAAGTCTGATGTGTATAGTTATGGTGTAGTGCTTCTTGAGTTGCTCTCTGACAAGAAAGTGTTGGATCCTTCCTTTTCTTCATATGGAAATGGATTCAACATCGTTGCATGGGCATGTATGCTTCTTCGACAAGGCCGTGCAAAGGAATTCTTTTCTTCAGGGTTGTGGGATGCAGGCCCCCATGATGATTTGGTTGAAGTTCTACACTTGGCAGTGGTATGTACGGTTGATTCTCTCTCGACTAGGCCTACTATGAGGCAAGTCGTTCGACGGCTAAAGCAACTTCAACCCCCCTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

1141

Amino Acids

123.18

Weight (kDa)

6.29

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	46 - 85	4.7e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	265 - 389	2.7e-06	Leucine-rich repeat region
LRR_8	PF13855	651 - 709	1.8e-08	Leucine rich repeat
Pkinase	PF00069	864 - 1063	1e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	865 - 1133	6.2e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02130 AT3G02130
fragaria_vesca	FvH4_6g46830
malus_domestica	MD09G1067100.v1.1 MD17G1060000.v1.1 MD17G1060100.v1.1
prunus_persica	Prupe.3G254600_v2.0.a1
pyrus_communis	pycom111g05640 pycom17g05970 pycom17g05980
rosa_chinensis	RchiOBHm_Chr2g0165821
rosa_laevigata	RLG00000021558
rosa_multiflora	Rmu_sc0003227.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085480
rosa_rugosa	Rorug02G0518000
rosa_samantha	Rh2AG583700 Rh2BG595700 Rh2CG566600 Rh2DG605500
rosa_wichuraiana	Rw2G048670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	2 cut(s)	2465, 2852
AccII	CGCG	3 cut(s)	104, 257, 2470
AccIII	TCCGGA	1 cut(s)	239
AclWI	GGATC	5 cut(s)	1464, 1516, 1956, 3182, 3195
AcoI	YGGCCR	4 cut(s)	913, 1936, 2131, 3021
AcuI	CTGAAG	7 cut(s)	95, 143, 905, 1178, 1340, 3024, 3264
AcyI	GRCGYC	2 cut(s)	110, 123
AfaI	GTAC	5 cut(s)	722, 1432, 2292, 2937, 3346
AfiI	CCNNNNNNNGG	6 cut(s)	119, 356, 467, 922, 1945, 3265
AflIII	ACRYGT	1 cut(s)	3107
AjiI	CACGTC	1 cut(s)	3108
AjnI	CCWGG	7 cut(s)	233, 1696, 2226, 2497, 2647, 2815, 2855
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 1488, 1520
AloI	GAACNNNNNNTCC	2 cut(s)	1828, 1860
Alw21I	GWGCWC	2 cut(s)	320, 2911
Alw26I	GTCTC	2 cut(s)	131, 1881
Alw44I	GTGCAC	1 cut(s)	2907
AlwI	GGATC	5 cut(s)	1464, 1516, 1956, 3182, 3195
AlwNI	CAGNNNCTG	1 cut(s)	228
Ama87I	CYCGRG	2 cut(s)	691, 975
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	9 cut(s)	913, 1541, 1885, 1936, 2131, 3021, 3256, 3298, 3368
ApaLI	GTGCAC	1 cut(s)	2907
ApeKI	GCWGC	6 cut(s)	154, 970, 1194, 1290, 2011, 2339
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
Asp700I	GAANNNNTTC	2 cut(s)	897, 1635
AspLEI	GCGC	3 cut(s)	104, 112, 928
AspS9I	GGNCC	7 cut(s)	53, 237, 1172, 1542, 2495, 3072, 3299
AsuC2I	CCSGG	5 cut(s)	51, 550, 674, 692, 693
AsuII	TTCGAA	1 cut(s)	878
AsuNHI	GCTAGC	1 cut(s)	2591
AvaI	CYCGRG	2 cut(s)	691, 975
AvaII	GGWCC	5 cut(s)	53, 237, 1172, 2495, 3072
BaeGI	GKGCMC	3 cut(s)	1587, 2576, 2911
BalI	TGGCCA	3 cut(s)	1938, 2133, 3023
BamHI	GGATCC	1 cut(s)	3187
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	320
BauI	CACGAG	1 cut(s)	2940
Bbv12I	GWGCWC	2 cut(s)	320, 2911
BbvCI	CCTCAGC	1 cut(s)	857
BbvI	GCAGC	6 cut(s)	141, 957, 1206, 1277, 2023, 2326
BccI	CCATC	3 cut(s)	470, 1760, 2149
BceAI	ACGGC	7 cut(s)	136, 544, 631, 697, 2687, 3243, 3410
BcgI	CGANNNNNNTGC	2 cut(s)	3371, 3405
BciT130I	CCWGG	7 cut(s)	235, 1698, 2228, 2499, 2649, 2817, 2857
BclI	TGATCA	2 cut(s)	1236, 2926
BcnI	CCSGG	5 cut(s)	51, 550, 674, 692, 693
BcoDI	GTCTC	2 cut(s)	131, 1881
BfmI	CTRYAG	2 cut(s)	847, 1607
BfoI	RGCGCY	2 cut(s)	113, 929
BfuAI	ACCTGC	1 cut(s)	696
BglII	AGATCT	2 cut(s)	651, 1161
BmcAI	AGTACT	1 cut(s)	1432
Bme18I	GGWCC	5 cut(s)	53, 237, 1172, 2495, 3072
BmeT110I	CYCGRG	2 cut(s)	691, 975
BmgBI	CACGTC	1 cut(s)	3108
BmgT120I	GGNCC	7 cut(s)	53, 237, 1172, 1542, 2495, 3072, 3299
BmrI	ACTGGG	2 cut(s)	1272, 1344
BmsI	GCATC	8 cut(s)	155, 799, 1810, 1832, 1966, 2411, 2426, 3283
BmtI	GCTAGC	1 cut(s)	2595
BmuI	ACTGGG	2 cut(s)	1272, 1344
BplI	GAGNNNNNCTC	2 cut(s)	3152, 3184
BpmI	CTGGAG	4 cut(s)	1707, 1973, 2511, 2670
Bpu10I	CCTNAGC	2 cut(s)	857, 1316
Bpu14I	TTCGAA	1 cut(s)	878
BpuMI	CCSGG	5 cut(s)	51, 550, 674, 692, 693
BsaBI	GATNNNNATC	1 cut(s)	626
BsaHI	GRCGYC	2 cut(s)	110, 123
BsaJI	CCNNGG	3 cut(s)	691, 2692, 2856
BsaWI	WCCGGW	2 cut(s)	25, 239
BsaXI	ACNNNNNCTCC	6 cut(s)	364, 394, 1857, 1887, 2643, 2673
Bsc4I	CCNNNNNNNGG	6 cut(s)	119, 356, 467, 922, 1945, 3265
Bse118I	RCCGGY	2 cut(s)	287, 915
Bse1I	ACTGG	9 cut(s)	222, 1267, 1339, 1603, 1690, 1740, 2062, 2778, 3064
Bse3DI	GCAATG	7 cut(s)	1409, 1532, 1544, 1613, 1620, 2207, 3108
Bse8I	GATNNNNATC	1 cut(s)	626
BseAI	TCCGGA	1 cut(s)	239
BseBI	CCWGG	7 cut(s)	235, 1698, 2228, 2499, 2649, 2817, 2857
BseDI	CCNNGG	3 cut(s)	691, 2692, 2856
BseGI	GGATG	6 cut(s)	946, 1558, 2402, 2743, 2989, 3298
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	6 cut(s)	119, 356, 467, 922, 1945, 3265
BseMI	GCAATG	7 cut(s)	1409, 1532, 1544, 1613, 1620, 2207, 3108
BseMII	CTCAG	8 cut(s)	186, 429, 754, 848, 1010, 1262, 2184, 2375
BseNI	ACTGG	9 cut(s)	222, 1267, 1339, 1603, 1690, 1740, 2062, 2778, 3064
BseRI	GAGGAG	1 cut(s)	388
BseSI	GKGCMC	3 cut(s)	1587, 2576, 2911
BseX3I	CGGCCG	1 cut(s)	913
BseXI	GCAGC	6 cut(s)	141, 957, 1206, 1277, 2023, 2326
BseYI	CCCAGC	5 cut(s)	204, 210, 665, 982, 2966
BsgI	GTGCAG	1 cut(s)	214
Bsh1236I	CGCG	3 cut(s)	104, 257, 2470
Bsh1285I	CGRYCG	1 cut(s)	916
BshFI	GGCC	9 cut(s)	915, 1543, 1887, 1938, 2133, 3023, 3258, 3300, 3370
BshNI	GGYRCC	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	916
BsiHKAI	GWGCWC	2 cut(s)	320, 2911
BsiHKCI	CYCGRG	2 cut(s)	691, 975
BsiSI	CCGG	9 cut(s)	26, 50, 240, 288, 549, 673, 692, 902, 916
BslFI	GGGAC	6 cut(s)	66, 674, 1185, 2259, 3049, 3085
BslI	CCNNNNNNNGG	6 cut(s)	119, 356, 467, 922, 1945, 3265
BsmAI	GTCTC	2 cut(s)	131, 1881
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	6 cut(s)	66, 674, 1185, 2259, 3049, 3085
BsmI	GAATGC	2 cut(s)	1533, 1658
BsnI	GGCC	9 cut(s)	915, 1543, 1887, 1938, 2133, 3023, 3258, 3300, 3370
BsoBI	CYCGRG	2 cut(s)	691, 975
Bsp119I	TTCGAA	1 cut(s)	878
Bsp1286I	GDGCHC	4 cut(s)	320, 1587, 2576, 2911
Bsp13I	TCCGGA	1 cut(s)	239
BspANI	GGCC	9 cut(s)	915, 1543, 1887, 1938, 2133, 3023, 3258, 3300, 3370
BspCNI	CTCAG	8 cut(s)	185, 430, 753, 849, 1009, 1261, 2183, 2374
BspEI	TCCGGA	1 cut(s)	239
BspFNI	CGCG	3 cut(s)	104, 257, 2470
BspMAI	CTGCAG	2 cut(s)	851, 1611
BspMI	ACCTGC	1 cut(s)	696
BspOI	GCTAGC	1 cut(s)	2595
BspPI	GGATC	5 cut(s)	1464, 1516, 1956, 3182, 3195
BspT104I	TTCGAA	1 cut(s)	878
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	7 cut(s)	1409, 1532, 1544, 1613, 1620, 2207, 3108
BsrFI	RCCGGY	2 cut(s)	287, 915
BsrI	ACTGG	9 cut(s)	222, 1267, 1339, 1603, 1690, 1740, 2062, 2778, 3064
BssAI	RCCGGY	2 cut(s)	287, 915
BssECI	CCNNGG	3 cut(s)	691, 2692, 2856
BssNAI	GTATAC	1 cut(s)	2466
BssNI	GRCGYC	2 cut(s)	110, 123
BssSI	CACGAG	1 cut(s)	2940
BssT1I	CCWWGG	1 cut(s)	2692
Bst1107I	GTATAC	1 cut(s)	2466
Bst2BI	CACGAG	1 cut(s)	2940
Bst2UI	CCWGG	7 cut(s)	235, 1698, 2228, 2499, 2649, 2817, 2857
Bst4CI	ACNGT	6 cut(s)	1430, 2524, 2600, 2706, 2954, 3349
Bst6I	CTCTTC	2 cut(s)	2308, 2360
BstACI	GRCGYC	2 cut(s)	110, 123
BstAPI	GCANNNNNTGC	1 cut(s)	1615
BstBI	TTCGAA	1 cut(s)	878
BstC8I	GCNNGC	8 cut(s)	782, 917, 1050, 1885, 2298, 2593, 2676, 3298
BstEII	GGTNACC	2 cut(s)	28, 2768
BstF5I	GGATG	6 cut(s)	946, 1558, 2402, 2743, 2989, 3298
BstFNI	CGCG	3 cut(s)	104, 257, 2470
BstH2I	RGCGCY	2 cut(s)	113, 929
BstHHI	GCGC	3 cut(s)	104, 112, 928
BstMAI	GTCTC	2 cut(s)	131, 1881
BstMCI	CGRYCG	1 cut(s)	916
BstMWI	GCNNNNNNNGC	8 cut(s)	160, 439, 862, 925, 979, 1021, 1615, 2580
BstNI	CCWGG	7 cut(s)	235, 1698, 2228, 2499, 2649, 2817, 2857
BstNSI	RCATGY	2 cut(s)	2030, 3240
BstPI	GGTNACC	2 cut(s)	28, 2768
BstSFI	CTRYAG	2 cut(s)	847, 1607
BstSLI	GKGCMC	3 cut(s)	1587, 2576, 2911
BstUI	CGCG	3 cut(s)	104, 257, 2470
BstV1I	GCAGC	6 cut(s)	141, 957, 1206, 1277, 2023, 2326
BstX2I	RGATCY	6 cut(s)	651, 1161, 1456, 1508, 1948, 3187
BstXI	CCANNNNNNTGG	3 cut(s)	1209, 1539, 2863
BstYI	RGATCY	6 cut(s)	651, 1161, 1456, 1508, 1948, 3187
BstZ17I	GTATAC	1 cut(s)	2466
BstZI	CGGCCG	1 cut(s)	913
BsuRI	GGCC	9 cut(s)	915, 1543, 1887, 1938, 2133, 3023, 3258, 3300, 3370
BtrI	CACGTC	1 cut(s)	3108
BtsCI	GGATG	6 cut(s)	946, 1558, 2402, 2743, 2989, 3298
BtsI	GCAGTG	2 cut(s)	226, 3342
BtsIMutI	CAGTG	9 cut(s)	226, 435, 748, 1393, 1733, 2055, 2785, 2936, 3342
BveI	ACCTGC	1 cut(s)	696
Cac8I	GCNNGC	8 cut(s)	782, 917, 1050, 1885, 2298, 2593, 2676, 3298
CaiI	CAGNNNCTG	1 cut(s)	228
CfoI	GCGC	3 cut(s)	104, 112, 928
Cfr10I	RCCGGY	2 cut(s)	287, 915
Cfr13I	GGNCC	7 cut(s)	53, 237, 1172, 1542, 2495, 3072, 3299
Cfr9I	CCCGGG	1 cut(s)	691
CseI	GACGC	4 cut(s)	112, 152, 263, 871
CsiI	ACCWGGT	2 cut(s)	233, 2226
Csp6I	GTAC	5 cut(s)	721, 1431, 2291, 2936, 3345
CviQI	GTAC	5 cut(s)	721, 1431, 2291, 2936, 3345
DinI	GGCGCC	1 cut(s)	111
EaeI	YGGCCR	4 cut(s)	913, 1936, 2131, 3021
EagI	CGGCCG	1 cut(s)	913
Eam1104I	CTCTTC	2 cut(s)	2308, 2360
EarI	CTCTTC	2 cut(s)	2308, 2360
EciI	GGCGGA	2 cut(s)	149, 312
Ecl136II	GAGCTC	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	913
Eco130I	CCWWGG	1 cut(s)	2692
Eco147I	AGGCCT	1 cut(s)	3370
Eco24I	GRGCYC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	2643
Eco47I	GGWCC	5 cut(s)	53, 237, 1172, 2495, 3072
Eco52I	CGGCCG	1 cut(s)	913
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	7 cut(s)	95, 143, 905, 1178, 1340, 3024, 3264
Eco88I	CYCGRG	2 cut(s)	691, 975
Eco91I	GGTNACC	2 cut(s)	28, 2768
EcoICRI	GAGCTC	1 cut(s)	318
EcoO109I	RGGNCCY	3 cut(s)	53, 3072, 3299
EcoO65I	GGTNACC	2 cut(s)	28, 2768
EcoRI	GAATTC	1 cut(s)	3269
EcoRII	CCWGG	7 cut(s)	233, 1696, 2226, 2497, 2647, 2815, 2855
EcoRV	GATATC	1 cut(s)	2643
EcoT14I	CCWWGG	1 cut(s)	2692
EcoT22I	ATGCAT	3 cut(s)	1660, 1825, 3001
EcoT38I	GRGCYC	1 cut(s)	320
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	2692
Esp3I	CGTCTC	1 cut(s)	131
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 3257, 3289
FaqI	GGGAC	6 cut(s)	66, 674, 1185, 2259, 3049, 3085
FauNDI	CATATG	1 cut(s)	3205
FbaI	TGATCA	2 cut(s)	1236, 2926
FblI	GTMKAC	2 cut(s)	2465, 2852
FokI	GGATG	6 cut(s)	953, 1565, 2389, 2730, 2996, 3305
FriOI	GRGCYC	1 cut(s)	320
GlaI	GCGC	3 cut(s)	103, 111, 927
GsaI	CCCAGC	5 cut(s)	208, 214, 669, 986, 2970
GsuI	CTGGAG	4 cut(s)	1707, 1973, 2511, 2670
HaeII	RGCGCY	2 cut(s)	113, 929
HaeIII	GGCC	9 cut(s)	915, 1543, 1887, 1938, 2133, 3023, 3258, 3300, 3370
HapII	CCGG	9 cut(s)	26, 50, 240, 288, 549, 673, 692, 902, 916
HgaI	GACGC	4 cut(s)	112, 152, 263, 871
HhaI	GCGC	3 cut(s)	104, 112, 928
Hin1I	GRCGYC	2 cut(s)	110, 123
Hin6I	GCGC	3 cut(s)	102, 110, 926
HinP1I	GCGC	3 cut(s)	102, 110, 926
HindIII	AAGCTT	4 cut(s)	782, 1298, 1328, 1679
HpaII	CCGG	9 cut(s)	26, 50, 240, 288, 549, 673, 692, 902, 916
Hpy166II	GTNNAC	8 cut(s)	571, 679, 721, 2083, 2466, 2853, 2909, 2936
Hpy8I	GTNNAC	8 cut(s)	571, 679, 721, 2083, 2466, 2853, 2909, 2936
Hpy99I	CGWCG	4 cut(s)	128, 257, 1024, 3396
HpyCH4III	ACNGT	6 cut(s)	1430, 2524, 2600, 2706, 2954, 3349
HpyCH4IV	ACGT	1 cut(s)	3107
HpyF10VI	GCNNNNNNNGC	8 cut(s)	160, 439, 862, 925, 979, 1021, 1615, 2580
HpySE526I	ACGT	1 cut(s)	3107
Hsp92I	GRCGYC	2 cut(s)	110, 123
HspAI	GCGC	3 cut(s)	102, 110, 926
KasI	GGCGCC	1 cut(s)	109
KflI	GGGWCCC	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	239
KroI	GCCGGC	1 cut(s)	915
KroNI	GCCGGC	1 cut(s)	917
Ksp22I	TGATCA	2 cut(s)	1236, 2926
LmnI	GCTCC	9 cut(s)	323, 417, 689, 1078, 1339, 1688, 1954, 2580, 2621
Lsp1109I	GCAGC	6 cut(s)	141, 957, 1206, 1277, 2023, 2326
LweI	GCATC	8 cut(s)	155, 799, 1810, 1832, 1966, 2411, 2426, 3283
MabI	ACCWGGT	2 cut(s)	233, 2226
MaeII	ACGT	1 cut(s)	3107
MaeIII	GTNAC	7 cut(s)	28, 224, 806, 2158, 2518, 2755, 2768
MfeI	CAATTG	2 cut(s)	733, 2391
MflI	RGATCY	6 cut(s)	651, 1161, 1456, 1508, 1948, 3187
MhlI	GDGCHC	4 cut(s)	320, 1587, 2576, 2911
MlsI	TGGCCA	3 cut(s)	1938, 2133, 3023
MluNI	TGGCCA	3 cut(s)	1938, 2133, 3023
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	5 cut(s)	176, 252, 629, 1061, 2661
MmeI	TCCRAC	9 cut(s)	690, 867, 1056, 1648, 1802, 1949, 2662, 2961, 3165
Mox20I	TGGCCA	3 cut(s)	1938, 2133, 3023
Mph1103I	ATGCAT	3 cut(s)	1660, 1825, 3001
MroI	TCCGGA	1 cut(s)	239
MroNI	GCCGGC	1 cut(s)	915
MroXI	GAANNNNTTC	2 cut(s)	897, 1635
MscI	TGGCCA	3 cut(s)	1938, 2133, 3023
MseI	TTAA	8 cut(s)	465, 603, 1029, 1284, 1743, 1890, 2264, 2994
MslI	CAYNNNNRTG	4 cut(s)	1537, 2778, 2955, 3235
Msp20I	TGGCCA	3 cut(s)	1938, 2133, 3023
MspA1I	CMGCKG	4 cut(s)	67, 204, 1290, 2548
MspI	CCGG	9 cut(s)	26, 50, 240, 288, 549, 673, 692, 902, 916
MunI	CAATTG	2 cut(s)	733, 2391
Mva1269I	GAATGC	2 cut(s)	1533, 1658
MvaI	CCWGG	7 cut(s)	235, 1698, 2228, 2499, 2649, 2817, 2857
MvnI	CGCG	3 cut(s)	104, 257, 2470
MwoI	GCNNNNNNNGC	8 cut(s)	160, 439, 862, 925, 979, 1021, 1615, 2580
NaeI	GCCGGC	1 cut(s)	917
NarI	GGCGCC	1 cut(s)	110
NciI	CCSGG	5 cut(s)	51, 550, 674, 692, 693
NdeI	CATATG	1 cut(s)	3205
NgoMIV	GCCGGC	1 cut(s)	915
NheI	GCTAGC	1 cut(s)	2591
NmeAIII	GCCGAG	1 cut(s)	891
NmuCI	GTSAC	4 cut(s)	28, 224, 2158, 2755
NsiI	ATGCAT	3 cut(s)	1660, 1825, 3001
NspI	RCATGY	2 cut(s)	2030, 3240
NspV	TTCGAA	1 cut(s)	878
PaeR7I	CTCGAG	1 cut(s)	975
PceI	AGGCCT	1 cut(s)	3370
PcsI	WCGNNNNNNNCGW	1 cut(s)	3256
PctI	GAATGC	2 cut(s)	1533, 1658
PdiI	GCCGGC	1 cut(s)	917
PdmI	GAANNNNTTC	2 cut(s)	897, 1635
PflFI	GACNNNGTC	1 cut(s)	638
PfoI	TCCNGGA	1 cut(s)	49
PleI	GAGTC	5 cut(s)	176, 251, 629, 1061, 2660
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	5 cut(s)	176, 251, 629, 1061, 2660
PpuMI	RGGWCCY	2 cut(s)	53, 3072
Psp124BI	GAGCTC	1 cut(s)	320
Psp5II	RGGWCCY	2 cut(s)	53, 3072
Psp6I	CCWGG	7 cut(s)	233, 1696, 2226, 2497, 2647, 2815, 2855
PspEI	GGTNACC	2 cut(s)	28, 2768
PspFI	CCCAGC	5 cut(s)	204, 210, 665, 982, 2966
PspGI	CCWGG	7 cut(s)	233, 1696, 2226, 2497, 2647, 2815, 2855
PspPI	GGNCC	7 cut(s)	53, 237, 1172, 1542, 2495, 3072, 3299
PspPPI	RGGWCCY	2 cut(s)	53, 3072
PstI	CTGCAG	2 cut(s)	851, 1611
PstNI	CAGNNNCTG	1 cut(s)	228
PsuI	RGATCY	6 cut(s)	651, 1161, 1456, 1508, 1948, 3187
PsyI	GACNNNGTC	1 cut(s)	638
PvuII	CAGCTG	1 cut(s)	204
RsaI	GTAC	5 cut(s)	722, 1432, 2292, 2937, 3346
RsaNI	GTAC	5 cut(s)	721, 1431, 2291, 2936, 3345
RseI	CAYNNNNRTG	4 cut(s)	1537, 2778, 2955, 3235
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	8 cut(s)	465, 603, 1029, 1284, 1743, 1890, 2264, 2994
Sau96I	GGNCC	7 cut(s)	53, 237, 1172, 1542, 2495, 3072, 3299
ScaI	AGTACT	1 cut(s)	1432
SchI	GAGTC	5 cut(s)	176, 252, 629, 1061, 2661
SduI	GDGCHC	4 cut(s)	320, 1587, 2576, 2911
SexAI	ACCWGGT	2 cut(s)	233, 2226
SfaNI	GCATC	8 cut(s)	155, 799, 1810, 1832, 1966, 2411, 2426, 3283
SfcI	CTRYAG	2 cut(s)	847, 1607
SfoI	GGCGCC	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	975
SfuI	TTCGAA	1 cut(s)	878
SinI	GGWCC	5 cut(s)	53, 237, 1172, 2495, 3072
SlaI	CTCGAG	1 cut(s)	975
SmaI	CCCGGG	1 cut(s)	693
SmiMI	CAYNNNNRTG	4 cut(s)	1537, 2778, 2955, 3235
SseBI	AGGCCT	1 cut(s)	3370
SspDI	GGCGCC	1 cut(s)	109
SspI	AATATT	1 cut(s)	2974
SstI	GAGCTC	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	3370
StyI	CCWWGG	1 cut(s)	2692
TaaI	ACNGT	6 cut(s)	1430, 2524, 2600, 2706, 2954, 3349
TaiI	ACGT	1 cut(s)	3110
TaqII	GACCGA	1 cut(s)	1189
TatI	WGTACW	3 cut(s)	720, 1430, 2290
TauI	GCSGC	5 cut(s)	67, 107, 110, 294, 297
Tru1I	TTAA	8 cut(s)	465, 603, 1029, 1284, 1743, 1890, 2264, 2994
Tru9I	TTAA	8 cut(s)	465, 603, 1029, 1284, 1743, 1890, 2264, 2994
TscAI	CASTG	9 cut(s)	233, 442, 748, 1393, 1740, 2062, 2785, 2936, 3342
TseFI	GTSAC	4 cut(s)	28, 224, 2158, 2755
TseI	GCWGC	6 cut(s)	154, 970, 1194, 1290, 2011, 2339
Tsp45I	GTSAC	4 cut(s)	28, 224, 2158, 2755
TspDTI	ATGAA	8 cut(s)	809, 1109, 1292, 1398, 1509, 2196, 2699, 3192
TspGWI	ACGGA	5 cut(s)	155, 254, 315, 339, 676
TspMI	CCCGGG	1 cut(s)	691
TspRI	CASTG	9 cut(s)	233, 442, 748, 1393, 1740, 2062, 2785, 2936, 3342
Tth111I	GACNNNGTC	1 cut(s)	638
VneI	GTGCAC	1 cut(s)	2907
VpaK11BI	GGWCC	5 cut(s)	53, 237, 1172, 2495, 3072
XceI	RCATGY	2 cut(s)	2030, 3240
XcmI	CCANNNNNNNNNTGG	3 cut(s)	64, 2141, 3056
XhoI	CTCGAG	1 cut(s)	975
XmaI	CCCGGG	1 cut(s)	691
XmiI	GTMKAC	2 cut(s)	2465, 2852
XmnI	GAANNNNTTC	2 cut(s)	897, 1635
ZrmI	AGTACT	1 cut(s)	1432
Zsp2I	ATGCAT	3 cut(s)	1660, 1825, 3001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.