Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003227.1

Orthogroup ID

OG0010808

Physical Location & Seq

Genomic Coordinates Forward (+)

8436 .. 12854

Gene Structure 4419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003227.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3477 bp

atgggtgttcgatcttcttcctctccggtcaccaatttcctctctttcccgggacccacttcgccgctggttctgaagctcgttttggtgctgtgggcgtgcgcggcggcgtcacagaacggcgtcgtttcggcggagacggacgcatcggtgctgcttcagctcaaaggctcagtcttggactcggaagggttgctttcgagctggggctcggtcaattccggtcactgcacctggtcaggagtcttgtgcgacgcgaatttccgtgtcgtttcgctcaacattaccggcgccggcgccggcggaggtaaatcgaaatcgagctcctttccgtgcgttgattttggtcagtttccgttttatgggttggggattaggaggagttgtgtgggtggtagtgggaggctggtggggaagctccctcctgtgattgggaagctcactgagctaaaggtcttgtctttgccctttaatggttttgatggtgaaattcctgttgaaatttggggcatggagaacctagaggtcgttgatcttgaagggaattcgatcaccgggtctttgccgtttcgggtgaacccgaatttgagggttctgaatcttgggtttaataagattcagggtgagataccgatctttgactctgtcagcttagagatcttgaatttagctgggaaccgggtgaacggctccgttccgggtttcgttggcaggttggaaggggtgtacttgtcatacaattggctcagtggggatattcctagtgagattggagatagttgtgggaagcttgagcatcttgatttgtctggcaacttcttggttcataagattccgagtagtctggggaactgcagtcggctgaggacgctgttgttgtattcgaatatgttggaagaaggtattccggctgaactcggccggcttcaggcgcttgaggtgttggatgtgtcgaggaatagcttgagtggatcgttgcctcgagagctggggaattgttctcagttgtctgtgcttgtgctttcgtcgctgtttaatccccttccccttgtgcgagccaattacacagatgactcgttgttggagcagttgagttccatgaatgatgacttcaattactttcaaggctcaatgccaaaggagattacaagccttccaaagctgaagatcttgtggggaccgagggcaagtattgagggcaactttccaagtgattggggtgcttgtgagaacttggaaatgatcaatttggctcagaatttttttactggggaaatttctagtgggcttaaccgctgccagaagcttcattttcttgacctaagcactaacaagcttactggggagcttgttcaggtccttcaggttccttgtatgactatgcttgatgtcagtggaaatttcttgtcaggttcattgcctgaatatgctaacagtacttgtcgtcctgtttcctctgtggatctttctttcaaagatgatgatttttcctcgccctatgaagcattttttggatctaaagctcaagctggaatgccattgcaatggcccacagaggatgatgttgttgtagtgattcacaacttcgggcacaataattttaccggcactctgcagtcattgcccattgcacccgaaaggtttcagaagaaaattctgtatgcattccttgttggagaaaacaagcttactggagcatttccaggtaatttgtttgggaagtgtcagggattagattcactggttgttaatgtaagcaacaacaggttagatgggaagattccaactgaaattggtaaaatgtgcaattctctcaagtttttagatgcatctctgaatcggattgtgggttccattcctgctagttttggagaattggtgtctcttgctggccttaacttgagttcgaacaggttgcaaggtcaaattccgaccactcttggccagataagggatctggagtgtctttctttgtctggtaataaccttacaggtgttattcctgctagtttggggcaggtttactccttgcatgtgcttgagctttctcggaactctctcactggtgagataccaaacgatcttgtaaacttgcgaaacttgagagttcttctgctggacaaaaataaactttctggccagattccatctggtttggcaaatgtgaccacgctctcagccttcaatgtgtcttacaataacttctctggttcattgcctttgaataataacctggtgaattgcaatactgctattggaaacccccatttaagttcctgcccctcactttctcaagtacagccagctaatactcaaggaagagttggcgattcagaaccttatgctgcttcaccattggtaggaactcagaagagtgctggtagcggtttcaattcaattgaaatagcatccattacatctgcatctgccattgttttagtgcttatagctcttgttgttctattcttgtatacgcggaagtggaatcggaagtctggaggtccaggctctactaggaaggaagttactgttttcacaaacattggggttccactgacctttgatagtgttgttcggggcacggggagcttcaatgctagcaactgtattgggaatggaggttttggagcaacttacaaggcagagatatcacctggagtcctagtggctataaaacggcttgctgttggaaggttccaaggagtgcaacagtttcatgcagaaatcaaaacactggggaggcttcgacatccaaatctggtcactttactaggttaccatgccagtgaaacagagatgttcctaatatataattattttcctggtggtaatctggaaaaatttattcaggaaaggtctaccagggcagtggattggaagatacttcacaagattgctttggacatagcccgtgcacttgcctacctacatgatcagtgtgtacctcgtgtccttcaccgtgatgtcaagcccagcaatattttgttggatgatgattttaatgcatatctatcagactttggtttggccagacttcttgggacttcagaaacccatgctactactggtgtagcagggacctttggatatgttgccccagaatatgcaatgacgtgtcgtgtttcagataagtctgatgtgtatagttatggtgtagtgcttcttgagttgctctctgacaagaaagtgttggatccttccttttcttcatatggaaatggattcaacatcgttgcatgggcatgtatgcttcttcgacaaggccgtgcaaaggaattcttttctgcagggttgtgggatgcaggcccccatgatgatttggttgaagttctacacttggcagtgagtccaacatgtcttaaaaggatggcaagccgtgatcctcgtggtggtgcaagcaatagcaatgaagcaatagaccaagtaaagcagcagtcgaagcaagtgaaacacgagaagcaggagatgctgccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

1158

Amino Acids

124.77

Weight (kDa)

6.19

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02130 AT3G02130
fragaria_vesca	FvH4_6g46830
malus_domestica	MD09G1067100.v1.1 MD17G1060000.v1.1 MD17G1060100.v1.1
prunus_persica	Prupe.3G254600_v2.0.a1
pyrus_communis	pycom111g05640 pycom17g05970 pycom17g05980
rosa_chinensis	RchiOBHm_Chr2g0165821
rosa_laevigata	RLG00000021558
rosa_multiflora	Rmu_sc0003227.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085480
rosa_rugosa	Rorug02G0518000
rosa_samantha	Rh2AG583700 Rh2BG595700 Rh2CG566600 Rh2DG605500
rosa_wichuraiana	Rw2G048670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	702, 2008
AccB1I	GGYRCC	2 cut(s)	290, 296
AccI	GTMKAC	2 cut(s)	2471, 2858
AccII	CGCG	3 cut(s)	104, 257, 2476
AciI	CCGC	8 cut(s)	65, 104, 107, 134, 303, 1294, 2385, 2476
AclWI	GGATC	7 cut(s)	979, 1470, 1522, 1962, 3188, 3201, 3374
AcoI	YGGCCR	4 cut(s)	919, 1942, 2137, 3027
AcuI	CTGAAG	6 cut(s)	95, 143, 911, 1184, 1346, 3030
AcyI	GRCGYC	4 cut(s)	110, 123, 291, 297
AfaI	GTAC	4 cut(s)	728, 1438, 2298, 2943
AfiI	CCNNNNNNNGG	8 cut(s)	362, 431, 473, 928, 1951, 2360, 3271, 3389
AflIII	ACRYGT	2 cut(s)	3113, 3353
AjiI	CACGTC	1 cut(s)	3114
AjnI	CCWGG	7 cut(s)	233, 1702, 2232, 2503, 2653, 2821, 2861
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 1494, 1526
AloI	GAACNNNNNNTCC	2 cut(s)	1834, 1866
Alw21I	GWGCWC	2 cut(s)	326, 2917
Alw26I	GTCTC	2 cut(s)	131, 1887
Alw44I	GTGCAC	1 cut(s)	2913
AlwI	GGATC	7 cut(s)	979, 1470, 1522, 1962, 3188, 3201, 3374
Ama87I	CYCGRG	2 cut(s)	49, 981
AoxI	GGCC	8 cut(s)	919, 1547, 1891, 1942, 2137, 3027, 3262, 3304
ApaLI	GTGCAC	1 cut(s)	2913
ApeKI	GCWGC	5 cut(s)	154, 1296, 2345, 3430, 3469
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
Asp700I	GAANNNNTTC	2 cut(s)	903, 1641
AspLEI	GCGC	4 cut(s)	104, 293, 299, 934
AspS9I	GGNCC	7 cut(s)	53, 1178, 1357, 1548, 2501, 3078, 3305
AsuC2I	CCSGG	5 cut(s)	50, 51, 556, 680, 699
AsuII	TTCGAA	2 cut(s)	884, 1907
AsuNHI	GCTAGC	1 cut(s)	2597
AvaI	CYCGRG	2 cut(s)	49, 981
AvaII	GGWCC	5 cut(s)	53, 1178, 1357, 2501, 3078
BaeGI	GKGCMC	3 cut(s)	1593, 2582, 2917
BalI	TGGCCA	3 cut(s)	1944, 2139, 3029
BamHI	GGATCC	1 cut(s)	3193
BanI	GGYRCC	2 cut(s)	290, 296
BanII	GRGCYC	2 cut(s)	212, 326
BauI	CACGAG	3 cut(s)	2946, 3384, 3452
Bbv12I	GWGCWC	2 cut(s)	326, 2917
BbvCI	CCTCAGC	1 cut(s)	863
BbvI	GCAGC	5 cut(s)	141, 1283, 2332, 3442, 3456
BccI	CCATC	4 cut(s)	476, 1766, 2155, 3361
BceAI	ACGGC	6 cut(s)	136, 550, 703, 2693, 3249, 3360
BcgI	CGANNNNNNTGC	2 cut(s)	1897, 1931
BciT130I	CCWGG	7 cut(s)	235, 1704, 2234, 2505, 2655, 2823, 2863
BclI	TGATCA	2 cut(s)	1242, 2932
BcnI	CCSGG	5 cut(s)	50, 51, 556, 680, 699
BcoDI	GTCTC	2 cut(s)	131, 1887
BfmI	CTRYAG	3 cut(s)	853, 1613, 3285
BfoI	RGCGCY	3 cut(s)	294, 300, 935
BfuAI	ACCTGC	2 cut(s)	702, 2008
BglII	AGATCT	2 cut(s)	657, 1167
BisI	GCNGC	8 cut(s)	65, 105, 108, 155, 1297, 2346, 3431, 3470
BlsI	GCNGC	8 cut(s)	66, 106, 109, 156, 1298, 2347, 3432, 3471
BmcAI	AGTACT	1 cut(s)	1438
Bme18I	GGWCC	5 cut(s)	53, 1178, 1357, 2501, 3078
BmeT110I	CYCGRG	2 cut(s)	49, 981
BmgBI	CACGTC	1 cut(s)	3114
BmgT120I	GGNCC	7 cut(s)	53, 1178, 1357, 1548, 2501, 3078, 3305
BmrI	ACTGGG	3 cut(s)	1278, 1350, 2744
BmsI	GCATC	8 cut(s)	155, 805, 1816, 1838, 2417, 2432, 3289, 3456
BmtI	GCTAGC	1 cut(s)	2601
BmuI	ACTGGG	3 cut(s)	1278, 1350, 2744
BplI	GAGNNNNNCTC	2 cut(s)	3158, 3190
BpmI	CTGGAG	4 cut(s)	1713, 1979, 2517, 2676
Bpu10I	CCTNAGC	2 cut(s)	863, 1322
Bpu14I	TTCGAA	2 cut(s)	884, 1907
BpuMI	CCSGG	5 cut(s)	50, 51, 556, 680, 699
BsaBI	GATNNNNATC	1 cut(s)	632
BsaHI	GRCGYC	4 cut(s)	110, 123, 291, 297
BsaJI	CCNNGG	4 cut(s)	49, 1181, 2698, 2862
BsaWI	WCCGGW	2 cut(s)	25, 221
BsaXI	ACNNNNNCTCC	6 cut(s)	370, 400, 1863, 1893, 2649, 2679
Bsc4I	CCNNNNNNNGG	8 cut(s)	362, 431, 473, 928, 1951, 2360, 3271, 3389
Bse118I	RCCGGY	5 cut(s)	287, 293, 299, 921, 1604
Bse1I	ACTGG	8 cut(s)	1273, 1345, 1696, 1746, 2068, 2739, 2784, 3070
Bse3DI	GCAATG	8 cut(s)	1415, 1538, 1550, 1619, 1626, 2213, 3114, 3412
Bse8I	GATNNNNATC	1 cut(s)	632
BseBI	CCWGG	7 cut(s)	235, 1704, 2234, 2505, 2655, 2823, 2863
BseDI	CCNNGG	4 cut(s)	49, 1181, 2698, 2862
BseGI	GGATG	7 cut(s)	952, 1564, 2408, 2749, 2995, 3304, 3372
BseJI	GATNNNNATC	1 cut(s)	632
BseLI	CCNNNNNNNGG	8 cut(s)	362, 431, 473, 928, 1951, 2360, 3271, 3389
BseMI	GCAATG	8 cut(s)	1415, 1538, 1550, 1619, 1626, 2213, 3114, 3412
BseMII	CTCAG	8 cut(s)	186, 435, 760, 854, 1016, 1268, 2190, 2381
BseNI	ACTGG	8 cut(s)	1273, 1345, 1696, 1746, 2068, 2739, 2784, 3070
BseRI	GAGGAG	1 cut(s)	394
BseSI	GKGCMC	3 cut(s)	1593, 2582, 2917
BseX3I	CGGCCG	1 cut(s)	919
BseXI	GCAGC	5 cut(s)	141, 1283, 2332, 3442, 3456
BseYI	CCCAGC	4 cut(s)	204, 671, 988, 2972
BsgI	GTGCAG	1 cut(s)	214
Bsh1236I	CGCG	3 cut(s)	104, 257, 2476
Bsh1285I	CGRYCG	1 cut(s)	922
BshFI	GGCC	8 cut(s)	921, 1549, 1893, 1944, 2139, 3029, 3264, 3306
BshNI	GGYRCC	2 cut(s)	290, 296
BsiEI	CGRYCG	1 cut(s)	922
BsiHKAI	GWGCWC	2 cut(s)	326, 2917
BsiHKCI	CYCGRG	2 cut(s)	49, 981
BslFI	GGGAC	4 cut(s)	66, 1191, 3055, 3091
BslI	CCNNNNNNNGG	8 cut(s)	362, 431, 473, 928, 1951, 2360, 3271, 3389
BsmAI	GTCTC	2 cut(s)	131, 1887
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	4 cut(s)	66, 1191, 3055, 3091
BsmI	GAATGC	2 cut(s)	1539, 1664
BsnI	GGCC	8 cut(s)	921, 1549, 1893, 1944, 2139, 3029, 3264, 3306
BsoBI	CYCGRG	2 cut(s)	49, 981
Bsp119I	TTCGAA	2 cut(s)	884, 1907
Bsp1286I	GDGCHC	5 cut(s)	212, 326, 1593, 2582, 2917
BspACI	CCGC	8 cut(s)	65, 104, 107, 134, 303, 1294, 2385, 2476
BspANI	GGCC	8 cut(s)	921, 1549, 1893, 1944, 2139, 3029, 3264, 3306
BspCNI	CTCAG	8 cut(s)	185, 436, 759, 855, 1015, 1267, 2189, 2380
BspFNI	CGCG	3 cut(s)	104, 257, 2476
BspMAI	CTGCAG	3 cut(s)	857, 1617, 3289
BspMI	ACCTGC	2 cut(s)	702, 2008
BspOI	GCTAGC	1 cut(s)	2601
BspPI	GGATC	7 cut(s)	979, 1470, 1522, 1962, 3188, 3201, 3374
BspT104I	TTCGAA	2 cut(s)	884, 1907
BspT107I	GGYRCC	2 cut(s)	290, 296
BsrDI	GCAATG	8 cut(s)	1415, 1538, 1550, 1619, 1626, 2213, 3114, 3412
BsrFI	RCCGGY	5 cut(s)	287, 293, 299, 921, 1604
BsrI	ACTGG	8 cut(s)	1273, 1345, 1696, 1746, 2068, 2739, 2784, 3070
BssAI	RCCGGY	5 cut(s)	287, 293, 299, 921, 1604
BssECI	CCNNGG	4 cut(s)	49, 1181, 2698, 2862
BssNAI	GTATAC	1 cut(s)	2472
BssNI	GRCGYC	4 cut(s)	110, 123, 291, 297
BssSI	CACGAG	3 cut(s)	2946, 3384, 3452
BssT1I	CCWWGG	1 cut(s)	2698
Bst1107I	GTATAC	1 cut(s)	2472
Bst2BI	CACGAG	3 cut(s)	2946, 3384, 3452
Bst2UI	CCWGG	7 cut(s)	235, 1704, 2234, 2505, 2655, 2823, 2863
Bst4CI	ACNGT	5 cut(s)	1436, 2530, 2606, 2712, 2960
Bst6I	CTCTTC	2 cut(s)	2314, 2366
BstACI	GRCGYC	4 cut(s)	110, 123, 291, 297
BstAPI	GCANNNNNTGC	2 cut(s)	1621, 3466
BstBI	TTCGAA	2 cut(s)	884, 1907
BstEII	GGTNACC	2 cut(s)	28, 2774
BstF5I	GGATG	7 cut(s)	952, 1564, 2408, 2749, 2995, 3304, 3372
BstFNI	CGCG	3 cut(s)	104, 257, 2476
BstH2I	RGCGCY	3 cut(s)	294, 300, 935
BstHHI	GCGC	4 cut(s)	104, 293, 299, 934
BstMAI	GTCTC	2 cut(s)	131, 1887
BstMCI	CGRYCG	1 cut(s)	922
BstNI	CCWGG	7 cut(s)	235, 1704, 2234, 2505, 2655, 2823, 2863
BstNSI	RCATGY	3 cut(s)	2036, 3246, 3357
BstPI	GGTNACC	2 cut(s)	28, 2774
BstSFI	CTRYAG	3 cut(s)	853, 1613, 3285
BstSLI	GKGCMC	3 cut(s)	1593, 2582, 2917
BstUI	CGCG	3 cut(s)	104, 257, 2476
BstV1I	GCAGC	5 cut(s)	141, 1283, 2332, 3442, 3456
BstX2I	RGATCY	6 cut(s)	657, 1167, 1462, 1514, 1954, 3193
BstXI	CCANNNNNNTGG	3 cut(s)	1215, 1545, 2869
BstYI	RGATCY	6 cut(s)	657, 1167, 1462, 1514, 1954, 3193
BstZ17I	GTATAC	1 cut(s)	2472
BstZI	CGGCCG	1 cut(s)	919
BsuRI	GGCC	8 cut(s)	921, 1549, 1893, 1944, 2139, 3029, 3264, 3306
BtrI	CACGTC	1 cut(s)	3114
BtsCI	GGATG	7 cut(s)	952, 1564, 2408, 2749, 2995, 3304, 3372
BtsI	GCAGTG	3 cut(s)	226, 2874, 3348
BveI	ACCTGC	2 cut(s)	702, 2008
CfoI	GCGC	4 cut(s)	104, 293, 299, 934
Cfr10I	RCCGGY	5 cut(s)	287, 293, 299, 921, 1604
Cfr13I	GGNCC	7 cut(s)	53, 1178, 1357, 1548, 2501, 3078, 3305
Cfr9I	CCCGGG	1 cut(s)	49
CseI	GACGC	5 cut(s)	99, 112, 152, 263, 877
CsiI	ACCWGGT	2 cut(s)	233, 2232
Csp6I	GTAC	4 cut(s)	727, 1437, 2297, 2942
CviQI	GTAC	4 cut(s)	727, 1437, 2297, 2942
DinI	GGCGCC	2 cut(s)	292, 298
EaeI	YGGCCR	4 cut(s)	919, 1942, 2137, 3027
EagI	CGGCCG	1 cut(s)	919
Eam1104I	CTCTTC	2 cut(s)	2314, 2366
EarI	CTCTTC	2 cut(s)	2314, 2366
EciI	GGCGGA	2 cut(s)	149, 318
Ecl136II	GAGCTC	1 cut(s)	324
EclXI	CGGCCG	1 cut(s)	919
Eco130I	CCWWGG	1 cut(s)	2698
Eco24I	GRGCYC	2 cut(s)	212, 326
Eco32I	GATATC	1 cut(s)	2649
Eco47I	GGWCC	5 cut(s)	53, 1178, 1357, 2501, 3078
Eco52I	CGGCCG	1 cut(s)	919
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	6 cut(s)	95, 143, 911, 1184, 1346, 3030
Eco88I	CYCGRG	2 cut(s)	49, 981
Eco91I	GGTNACC	2 cut(s)	28, 2774
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	4 cut(s)	53, 1357, 3078, 3305
EcoO65I	GGTNACC	2 cut(s)	28, 2774
EcoRI	GAATTC	2 cut(s)	544, 3275
EcoRII	CCWGG	7 cut(s)	233, 1702, 2232, 2503, 2653, 2821, 2861
EcoRV	GATATC	1 cut(s)	2649
EcoT14I	CCWWGG	1 cut(s)	2698
EcoT22I	ATGCAT	3 cut(s)	1666, 1831, 3007
EcoT38I	GRGCYC	2 cut(s)	212, 326
EgeI	GGCGCC	2 cut(s)	292, 298
EheI	GGCGCC	2 cut(s)	292, 298
ErhI	CCWWGG	1 cut(s)	2698
Esp3I	CGTCTC	1 cut(s)	131
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 3263, 3295
FaqI	GGGAC	4 cut(s)	66, 1191, 3055, 3091
FauNDI	CATATG	1 cut(s)	3211
FbaI	TGATCA	2 cut(s)	1242, 2932
FblI	GTMKAC	2 cut(s)	2471, 2858
Fnu4HI	GCNGC	8 cut(s)	65, 105, 108, 155, 1297, 2346, 3431, 3470
FokI	GGATG	7 cut(s)	959, 1571, 2395, 2736, 3002, 3311, 3379
FriOI	GRGCYC	2 cut(s)	212, 326
Fsp4HI	GCNGC	8 cut(s)	65, 105, 108, 155, 1297, 2346, 3431, 3470
GlaI	GCGC	4 cut(s)	103, 292, 298, 933
GluI	GCNGC	8 cut(s)	65, 105, 108, 155, 1297, 2346, 3431, 3470
GsaI	CCCAGC	4 cut(s)	208, 675, 992, 2976
GsuI	CTGGAG	4 cut(s)	1713, 1979, 2517, 2676
HaeII	RGCGCY	3 cut(s)	294, 300, 935
HaeIII	GGCC	8 cut(s)	921, 1549, 1893, 1944, 2139, 3029, 3264, 3306
HgaI	GACGC	5 cut(s)	99, 112, 152, 263, 877
HhaI	GCGC	4 cut(s)	104, 293, 299, 934
Hin1I	GRCGYC	4 cut(s)	110, 123, 291, 297
Hin6I	GCGC	4 cut(s)	102, 291, 297, 932
HinP1I	GCGC	4 cut(s)	102, 291, 297, 932
HindIII	AAGCTT	4 cut(s)	788, 1304, 1334, 1685
Hpy166II	GTNNAC	9 cut(s)	577, 685, 727, 2023, 2089, 2472, 2859, 2915, 2942
Hpy8I	GTNNAC	9 cut(s)	577, 685, 727, 2023, 2089, 2472, 2859, 2915, 2942
Hpy99I	CGWCG	3 cut(s)	128, 257, 1030
HpyCH4III	ACNGT	5 cut(s)	1436, 2530, 2606, 2712, 2960
HpyCH4IV	ACGT	1 cut(s)	3113
HpySE526I	ACGT	1 cut(s)	3113
Hsp92I	GRCGYC	4 cut(s)	110, 123, 291, 297
HspAI	GCGC	4 cut(s)	102, 291, 297, 932
KasI	GGCGCC	2 cut(s)	290, 296
KflI	GGGWCCC	1 cut(s)	53
KroI	GCCGGC	3 cut(s)	293, 299, 921
KroNI	GCCGGC	3 cut(s)	295, 301, 923
Ksp22I	TGATCA	2 cut(s)	1242, 2932
LmnI	GCTCC	8 cut(s)	329, 423, 695, 1084, 1345, 1694, 2586, 2627
Lsp1109I	GCAGC	5 cut(s)	141, 1283, 2332, 3442, 3456
LweI	GCATC	8 cut(s)	155, 805, 1816, 1838, 2417, 2432, 3289, 3456
MabI	ACCWGGT	2 cut(s)	233, 2232
MaeII	ACGT	1 cut(s)	3113
MaeIII	GTNAC	7 cut(s)	28, 111, 224, 2164, 2524, 2761, 2774
MfeI	CAATTG	2 cut(s)	739, 2397
MflI	RGATCY	6 cut(s)	657, 1167, 1462, 1514, 1954, 3193
MhlI	GDGCHC	5 cut(s)	212, 326, 1593, 2582, 2917
MlsI	TGGCCA	3 cut(s)	1944, 2139, 3029
MluNI	TGGCCA	3 cut(s)	1944, 2139, 3029
Mly113I	GGCGCC	2 cut(s)	291, 297
MlyI	GAGTC	6 cut(s)	176, 252, 635, 1067, 2667, 3355
Mox20I	TGGCCA	3 cut(s)	1944, 2139, 3029
Mph1103I	ATGCAT	3 cut(s)	1666, 1831, 3007
MreI	CGCCGGCG	2 cut(s)	293, 299
MroNI	GCCGGC	3 cut(s)	293, 299, 921
MroXI	GAANNNNTTC	2 cut(s)	903, 1641
MscI	TGGCCA	3 cut(s)	1944, 2139, 3029
MseI	TTAA	9 cut(s)	471, 609, 1035, 1290, 1749, 1896, 2270, 3000, 3360
MslI	CAYNNNNRTG	4 cut(s)	1543, 2784, 2961, 3241
Msp20I	TGGCCA	3 cut(s)	1944, 2139, 3029
MspA1I	CMGCKG	2 cut(s)	67, 1296
MunI	CAATTG	2 cut(s)	739, 2397
Mva1269I	GAATGC	2 cut(s)	1539, 1664
MvaI	CCWGG	7 cut(s)	235, 1704, 2234, 2505, 2655, 2823, 2863
MvnI	CGCG	3 cut(s)	104, 257, 2476
NaeI	GCCGGC	3 cut(s)	295, 301, 923
NarI	GGCGCC	2 cut(s)	291, 297
NciI	CCSGG	5 cut(s)	50, 51, 556, 680, 699
NdeI	CATATG	1 cut(s)	3211
NgoMIV	GCCGGC	3 cut(s)	293, 299, 921
NheI	GCTAGC	1 cut(s)	2597
NmeAIII	GCCGAG	1 cut(s)	897
NmuCI	GTSAC	5 cut(s)	28, 111, 224, 2164, 2761
NsiI	ATGCAT	3 cut(s)	1666, 1831, 3007
NspI	RCATGY	3 cut(s)	2036, 3246, 3357
NspV	TTCGAA	2 cut(s)	884, 1907
PaeR7I	CTCGAG	1 cut(s)	981
PciI	ACATGT	1 cut(s)	3353
PcsI	WCGNNNNNNNCGW	1 cut(s)	3262
PctI	GAATGC	2 cut(s)	1539, 1664
PdiI	GCCGGC	3 cut(s)	295, 301, 923
PdmI	GAANNNNTTC	2 cut(s)	903, 1641
PflFI	GACNNNGTC	1 cut(s)	644
PkrI	GCNGC	8 cut(s)	66, 106, 109, 156, 1298, 2347, 3432, 3471
PleI	GAGTC	6 cut(s)	176, 251, 635, 1067, 2666, 3354
PluTI	GGCGCC	2 cut(s)	294, 300
PpsI	GAGTC	6 cut(s)	176, 251, 635, 1067, 2666, 3354
PpuMI	RGGWCCY	3 cut(s)	53, 1357, 3078
PscI	ACATGT	1 cut(s)	3353
Psp124BI	GAGCTC	1 cut(s)	326
Psp5II	RGGWCCY	3 cut(s)	53, 1357, 3078
Psp6I	CCWGG	7 cut(s)	233, 1702, 2232, 2503, 2653, 2821, 2861
PspEI	GGTNACC	2 cut(s)	28, 2774
PspFI	CCCAGC	4 cut(s)	204, 671, 988, 2972
PspGI	CCWGG	7 cut(s)	233, 1702, 2232, 2503, 2653, 2821, 2861
PspPI	GGNCC	7 cut(s)	53, 1178, 1357, 1548, 2501, 3078, 3305
PspPPI	RGGWCCY	3 cut(s)	53, 1357, 3078
PstI	CTGCAG	3 cut(s)	857, 1617, 3289
PsuI	RGATCY	6 cut(s)	657, 1167, 1462, 1514, 1954, 3193
PsyI	GACNNNGTC	1 cut(s)	644
RsaI	GTAC	4 cut(s)	728, 1438, 2298, 2943
RsaNI	GTAC	4 cut(s)	727, 1437, 2297, 2942
RseI	CAYNNNNRTG	4 cut(s)	1543, 2784, 2961, 3241
SacI	GAGCTC	1 cut(s)	326
SaqAI	TTAA	9 cut(s)	471, 609, 1035, 1290, 1749, 1896, 2270, 3000, 3360
SatI	GCNGC	8 cut(s)	65, 105, 108, 155, 1297, 2346, 3431, 3470
Sau96I	GGNCC	7 cut(s)	53, 1178, 1357, 1548, 2501, 3078, 3305
ScaI	AGTACT	1 cut(s)	1438
SchI	GAGTC	6 cut(s)	176, 252, 635, 1067, 2667, 3355
SduI	GDGCHC	5 cut(s)	212, 326, 1593, 2582, 2917
SexAI	ACCWGGT	2 cut(s)	233, 2232
SfaNI	GCATC	8 cut(s)	155, 805, 1816, 1838, 2417, 2432, 3289, 3456
SfcI	CTRYAG	3 cut(s)	853, 1613, 3285
SfoI	GGCGCC	2 cut(s)	292, 298
Sfr274I	CTCGAG	1 cut(s)	981
SfuI	TTCGAA	2 cut(s)	884, 1907
SgrAI	CRCCGGYG	2 cut(s)	293, 299
SinI	GGWCC	5 cut(s)	53, 1178, 1357, 2501, 3078
SlaI	CTCGAG	1 cut(s)	981
SmaI	CCCGGG	1 cut(s)	51
SmiMI	CAYNNNNRTG	4 cut(s)	1543, 2784, 2961, 3241
SsiI	CCGC	8 cut(s)	65, 104, 107, 134, 303, 1294, 2385, 2476
SspDI	GGCGCC	2 cut(s)	290, 296
SspI	AATATT	1 cut(s)	2980
SstI	GAGCTC	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	2698
TaaI	ACNGT	5 cut(s)	1436, 2530, 2606, 2712, 2960
TaiI	ACGT	1 cut(s)	3116
TaqII	GACCGA	2 cut(s)	202, 1195
TatI	WGTACW	3 cut(s)	726, 1436, 2296
TauI	GCSGC	3 cut(s)	67, 107, 110
Tru1I	TTAA	9 cut(s)	471, 609, 1035, 1290, 1749, 1896, 2270, 3000, 3360
Tru9I	TTAA	9 cut(s)	471, 609, 1035, 1290, 1749, 1896, 2270, 3000, 3360
TseFI	GTSAC	5 cut(s)	28, 111, 224, 2164, 2761
TseI	GCWGC	5 cut(s)	154, 1296, 2345, 3430, 3469
Tsp45I	GTSAC	5 cut(s)	28, 111, 224, 2164, 2761
TspDTI	ATGAA	9 cut(s)	815, 1115, 1298, 1404, 1515, 2202, 2705, 3198, 3423
TspGWI	ACGGA	5 cut(s)	155, 254, 321, 345, 682
TspMI	CCCGGG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	644
VneI	GTGCAC	1 cut(s)	2913
VpaK11BI	GGWCC	5 cut(s)	53, 1178, 1357, 2501, 3078
XceI	RCATGY	3 cut(s)	2036, 3246, 3357
XcmI	CCANNNNNNNNNTGG	3 cut(s)	64, 2147, 3062
XhoI	CTCGAG	1 cut(s)	981
XmaI	CCCGGG	1 cut(s)	49
XmiI	GTMKAC	2 cut(s)	2471, 2858
XmnI	GAANNNNTTC	2 cut(s)	903, 1641
ZrmI	AGTACT	1 cut(s)	1438
Zsp2I	ATGCAT	3 cut(s)	1666, 1831, 3007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.