Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009707

Physical Location & Seq

Genomic Coordinates Forward (+)

36011754 .. 36013819

Gene Structure 2066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGTCAAACTCAAGAGATTCTCATGCACAGCCTCTTCTTCCTCACATAGCTCTATTCCCATGCGCCGGAATGGGCCATCTGACTCCTTTCCTGCGCCTCGCTTCCACGCTCTCCTCCTCCCAAAACTGCTTGGTCACCTTGATCACAGCCTCCCCTGCTGTTTCCGCAGCAGAGTCCACACACATTTCCTTGTTCCTTTCTCAACACCCAAAAGTCAACCATCTTGAGTTCCATCTCATTCCCTCCGATCCAACCACCACCACCATTCCCGACCCTTTCTTTCTCCAATGGCAATCCACCAACCACTCTCTCCATCTCCTCTACCCTTCACTCGCTTCCGCATCGCCGCCTCTCTCGGCGATCTTCTCCGACTTTGTAGTAGCACCAAGTATGGGAACAATGGCTGCCCAACTCAACATTCCCAACTACATCTTCTCCCCCACTTCATGTAAGTTCTTCTGTCTCATGGCTTACCTTCCTACTCTCTTATCAAACACTTCAGATATTAGCACTCTAACTCAAGTCGAAATCCCCGGCCTCGCCCCTCTGCCAATGACAAGCATTCCTCCCCCATTCAGGAATCCAAATCATATCTTCACATCACTAATACTTCAAAGCTCTCGAGCTCTCTCTACCGCGAAAGCTATCCTAATGAACACCTTCCATGAGTTTGAGTCAGACACTCTAGCTTCTATCAATGATGGCACAGCTTTACACAACATTAACCTCCCACCAATTCTCCCAATTGGGCCGTTACAAGATTTGGACATCAAGAATGATCACCAAGACAAGTACTACCTGTCATGGCTAGACAACCAGCCGAAAGAGTCTGTAGTTTACGTTAGCTTTGGAAGCAGAACAGCTATGTCGGATTCACAGATAAGAGAGCTCTCAAAAGGGTTGGAGACAAGTGGATATAGGTTCTTGTGGGTACTGAAGACTAGTAAAGTTGATAAGGATGATATACAAGAGGTGAGTGATATGGTGGGAGAGTCATTTATGGAGAGAACAAAGAACAAGGGCATTGTATTGAAAGCTTGGGTAAGCCAGCAGGATATTCTAGAACATCCAGCCATTGGAGGGTTTGTGAATCACTGCGGTTGGAACTCGGTTATGGAAGCGGCCCGGGAAGGCATTCCGGTGCTGGCGTGGCCGCAACATGGGGATCAAAGCGTGAACGCTGAGATTGTGGAGAAGGCAGGGTTAGGGATATGGGAGAGGAAATGGGGTTGGGGACTTGAAGGGTTGGTGAGTGCTGAAGAGATAAGAAATAAGATTGTGGAGCTGATGGAACATGAGAAGGTGAGGAGTTGTTCTAAAAAGGTTGGGGAAGAGGCTAGGAAAGCTAGTGGGATTGATGGCAGATCTGAGAAGGTGGTCAAGGAAATCATGCAGTCTTTGATGCAGAAGAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

473

Amino Acids

52.18

Weight (kDa)

6.01

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	270 - 403	6.8e-20	UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C	PF06722	341 - 446	2.7e-07	Erythromycin biosynthesis protein CIII-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47570 FvH4_6g47580
malus_domestica	MD17G1055700.v1.1
prunus_persica	Prupe.3G260000_v2.0.a1 Prupe.3G260100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166671 RchiOBHm_Chr2g0166701
rosa_laevigata	RLG00000021640
rosa_multiflora	Rmu_co8149328.1_g000001 Rmu_co8284467.1_g000001 Rmu_sc0002181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084310 Rroxscaffold_2G00084620
rosa_rugosa	Rorug02G0524900 Rorug02G0558700
rosa_samantha	Rh2AG591200 Rh2BG603000 Rh2CG574000 Rh2DG613800 Rh2DG613900
rosa_wichuraiana	Rw2G049240 Rw2G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1076
AccII	CGCG	1 cut(s)	638
AciI	CCGC	7 cut(s)	165, 339, 347, 636, 1098, 1121, 1154
AclWI	GGATC	2 cut(s)	242, 1173
AcoI	YGGCCR	1 cut(s)	1151
AcuI	CTGAAG	3 cut(s)	483, 956, 1278
AfaI	GTAC	2 cut(s)	794, 933
AfiI	CCNNNNNNNGG	6 cut(s)	65, 392, 576, 1076, 1080, 1160
AgsI	TTSAA	3 cut(s)	614, 1033, 1241
AhlI	ACTAGT	1 cut(s)	941
AjuI	GAANNNNNNNTTGG	4 cut(s)	402, 416, 434, 448
Alw21I	GWGCWC	2 cut(s)	628, 891
Alw26I	GTCTC	2 cut(s)	467, 899
AlwI	GGATC	2 cut(s)	242, 1173
Ama87I	CYCGRG	2 cut(s)	621, 1125
AoxI	GGCC	5 cut(s)	73, 535, 749, 1122, 1151
ApeKI	GCWGC	2 cut(s)	167, 404
Asp700I	GAANNNNTTC	2 cut(s)	659, 1134
AspLEI	GCGC	2 cut(s)	65, 96
AspS9I	GGNCC	3 cut(s)	73, 749, 1123
AsuC2I	CCSGG	3 cut(s)	534, 1126, 1127
AsuHPI	GGTGA	5 cut(s)	127, 773, 985, 1261, 1315
AvaI	CYCGRG	2 cut(s)	621, 1125
BanII	GRGCYC	2 cut(s)	628, 891
BbsI	GAAGAC	1 cut(s)	944
Bbv12I	GWGCWC	2 cut(s)	628, 891
BbvI	GCAGC	2 cut(s)	179, 391
BccI	CCATC	7 cut(s)	84, 228, 240, 321, 695, 1282, 1352
BceAI	ACGGC	1 cut(s)	736
BclI	TGATCA	2 cut(s)	141, 778
BcnI	CCSGG	3 cut(s)	534, 1126, 1127
BcoDI	GTCTC	2 cut(s)	467, 899
BcuI	ACTAGT	1 cut(s)	941
BfaI	CTAG	7 cut(s)	686, 809, 942, 1061, 1338, 1347, 1417
BfmI	CTRYAG	1 cut(s)	831
BglII	AGATCT	1 cut(s)	1364
BisI	GCNGC	5 cut(s)	168, 347, 405, 1122, 1154
BlsI	GCNGC	5 cut(s)	169, 348, 406, 1123, 1155
BmcAI	AGTACT	1 cut(s)	794
Bme1390I	CCNGG	3 cut(s)	534, 1126, 1127
BmeT110I	CYCGRG	2 cut(s)	621, 1125
BmgT120I	GGNCC	3 cut(s)	73, 749, 1123
BmrFI	CCNGG	3 cut(s)	534, 1126, 1127
BmsI	GCATC	2 cut(s)	350, 1392
BpiI	GAAGAC	1 cut(s)	944
BpuEI	CTTGAG	2 cut(s)	245, 504
BpuMI	CCSGG	3 cut(s)	534, 1126, 1127
BsaJI	CCNNGG	2 cut(s)	532, 1125
BsaWI	WCCGGW	1 cut(s)	1138
BsaXI	ACNNNNNCTCC	6 cut(s)	419, 449, 723, 753, 1071, 1101
Bsc4I	CCNNNNNNNGG	6 cut(s)	65, 392, 576, 1076, 1080, 1160
BseDI	CCNNGG	2 cut(s)	532, 1125
BseGI	GGATG	2 cut(s)	964, 1066
BseLI	CCNNNNNNNGG	6 cut(s)	65, 392, 576, 1076, 1080, 1160
BseMII	CTCAG	2 cut(s)	1173, 1359
BseRI	GAGGAG	4 cut(s)	103, 106, 308, 1321
BseXI	GCAGC	2 cut(s)	179, 391
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	5 cut(s)	75, 537, 751, 1124, 1153
BsiHKAI	GWGCWC	2 cut(s)	628, 891
BsiHKCI	CYCGRG	2 cut(s)	621, 1125
BsiSI	CCGG	4 cut(s)	66, 534, 1126, 1139
BslFI	GGGAC	1 cut(s)	1248
BslI	CCNNNNNNNGG	6 cut(s)	65, 392, 576, 1076, 1080, 1160
BsmAI	GTCTC	2 cut(s)	467, 899
BsmFI	GGGAC	1 cut(s)	1248
BsmI	GAATGC	2 cut(s)	561, 1134
BsnI	GGCC	5 cut(s)	75, 537, 751, 1124, 1153
BsoBI	CYCGRG	2 cut(s)	621, 1125
Bsp1286I	GDGCHC	2 cut(s)	628, 891
Bsp143I	GATC	6 cut(s)	141, 247, 360, 778, 1165, 1364
BspACI	CCGC	7 cut(s)	165, 339, 347, 636, 1098, 1121, 1154
BspANI	GGCC	5 cut(s)	75, 537, 751, 1124, 1153
BspCNI	CTCAG	2 cut(s)	1174, 1360
BspFNI	CGCG	1 cut(s)	638
BspPI	GGATC	2 cut(s)	242, 1173
BssECI	CCNNGG	2 cut(s)	532, 1125
BssMI	GATC	6 cut(s)	141, 247, 360, 778, 1165, 1364
Bst6I	CTCTTC	4 cut(s)	39, 1254, 1326, 1403
BstC8I	GCNNGC	2 cut(s)	1049, 1146
BstDEI	CTNAG	2 cut(s)	1182, 1368
BstEII	GGTNACC	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	964, 1066
BstFNI	CGCG	1 cut(s)	638
BstHHI	GCGC	2 cut(s)	65, 96
BstKTI	GATC	6 cut(s)	144, 250, 363, 781, 1168, 1367
BstMAI	GTCTC	2 cut(s)	467, 899
BstMBI	GATC	6 cut(s)	141, 247, 360, 778, 1165, 1364
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 164, 852, 1150, 1343
BstPI	GGTNACC	1 cut(s)	133
BstSCI	CCNGG	3 cut(s)	532, 1124, 1125
BstSFI	CTRYAG	1 cut(s)	831
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	2 cut(s)	179, 391
BstV2I	GAAGAC	1 cut(s)	944
BstX2I	RGATCY	1 cut(s)	1364
BstYI	RGATCY	1 cut(s)	1364
BsuRI	GGCC	5 cut(s)	75, 537, 751, 1124, 1153
BtgZI	GCGATG	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	964, 1066
BtsI	GCAGTG	1 cut(s)	1093
BtsIMutI	CAGTG	1 cut(s)	1093
Cac8I	GCNNGC	2 cut(s)	1049, 1146
CfoI	GCGC	2 cut(s)	65, 96
Cfr13I	GGNCC	3 cut(s)	73, 749, 1123
Cfr9I	CCCGGG	1 cut(s)	1125
Csp6I	GTAC	2 cut(s)	793, 932
CviAII	CATG	9 cut(s)	23, 60, 447, 466, 665, 804, 1160, 1295, 1390
CviQI	GTAC	2 cut(s)	793, 932
DdeI	CTNAG	2 cut(s)	1182, 1368
DpnI	GATC	6 cut(s)	143, 249, 362, 780, 1167, 1366
DpnII	GATC	6 cut(s)	141, 247, 360, 778, 1165, 1364
EaeI	YGGCCR	1 cut(s)	1151
Eam1104I	CTCTTC	4 cut(s)	39, 1254, 1326, 1403
EarI	CTCTTC	4 cut(s)	39, 1254, 1326, 1403
Ecl136II	GAGCTC	2 cut(s)	626, 889
Eco24I	GRGCYC	2 cut(s)	628, 891
Eco53kI	GAGCTC	2 cut(s)	626, 889
Eco57I	CTGAAG	3 cut(s)	483, 956, 1278
Eco88I	CYCGRG	2 cut(s)	621, 1125
Eco91I	GGTNACC	1 cut(s)	133
EcoICRI	GAGCTC	2 cut(s)	626, 889
EcoO65I	GGTNACC	1 cut(s)	133
EcoT38I	GRGCYC	2 cut(s)	628, 891
FaeI	CATG	9 cut(s)	26, 63, 450, 469, 668, 807, 1163, 1298, 1393
FaqI	GGGAC	1 cut(s)	1248
FatI	CATG	9 cut(s)	22, 59, 446, 465, 664, 803, 1159, 1294, 1389
FbaI	TGATCA	2 cut(s)	141, 778
Fnu4HI	GCNGC	5 cut(s)	168, 347, 405, 1122, 1154
FokI	GGATG	2 cut(s)	971, 1053
FriOI	GRGCYC	2 cut(s)	628, 891
Fsp4HI	GCNGC	5 cut(s)	168, 347, 405, 1122, 1154
FspBI	CTAG	7 cut(s)	686, 809, 942, 1061, 1338, 1347, 1417
GlaI	GCGC	2 cut(s)	64, 95
GluI	GCNGC	5 cut(s)	168, 347, 405, 1122, 1154
HaeIII	GGCC	5 cut(s)	75, 537, 751, 1124, 1153
HapII	CCGG	4 cut(s)	66, 534, 1126, 1139
HhaI	GCGC	2 cut(s)	65, 96
Hin1II	CATG	9 cut(s)	26, 63, 450, 469, 668, 807, 1163, 1298, 1393
Hin6I	GCGC	2 cut(s)	63, 94
HinP1I	GCGC	2 cut(s)	63, 94
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	1035
HinfI	GANTC	9 cut(s)	17, 82, 173, 580, 674, 827, 872, 992, 1090
HpaII	CCGG	4 cut(s)	66, 534, 1126, 1139
HphI	GGTGA	5 cut(s)	127, 773, 985, 1261, 1315
Hpy166II	GTNNAC	4 cut(s)	177, 217, 838, 1177
Hpy188I	TCNGA	7 cut(s)	81, 247, 370, 502, 679, 871, 1369
Hpy188III	TCNNGA	7 cut(s)	12, 224, 269, 577, 621, 772, 1061
Hpy8I	GTNNAC	4 cut(s)	177, 217, 838, 1177
HpyAV	CCTTC	8 cut(s)	336, 485, 670, 1124, 1189, 1235, 1294, 1366
HpyCH4IV	ACGT	1 cut(s)	840
HpyCH4V	TGCA	3 cut(s)	26, 1393, 1405
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 164, 852, 1150, 1343
HpyF3I	CTNAG	2 cut(s)	1182, 1368
HpySE526I	ACGT	1 cut(s)	840
Hsp92II	CATG	9 cut(s)	26, 63, 450, 469, 668, 807, 1163, 1298, 1393
HspAI	GCGC	2 cut(s)	63, 94
Ksp22I	TGATCA	2 cut(s)	141, 778
Kzo9I	GATC	6 cut(s)	141, 247, 360, 778, 1165, 1364
LmnI	GCTCC	1 cut(s)	1282
Lsp1109I	GCAGC	2 cut(s)	179, 391
LweI	GCATC	2 cut(s)	350, 1392
MaeI	CTAG	7 cut(s)	686, 809, 942, 1061, 1338, 1347, 1417
MaeII	ACGT	1 cut(s)	840
MaeIII	GTNAC	2 cut(s)	133, 753
MalI	GATC	6 cut(s)	143, 249, 362, 780, 1167, 1366
MboI	GATC	6 cut(s)	141, 247, 360, 778, 1165, 1364
MboII	GAAGA	9 cut(s)	26, 29, 355, 424, 448, 586, 949, 1271, 1343
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	1364
MhlI	GDGCHC	2 cut(s)	628, 891
MluCI	AATT	2 cut(s)	735, 744
MlyI	GAGTC	5 cut(s)	76, 182, 683, 836, 1001
MmeI	TCCRAC	5 cut(s)	275, 393, 849, 882, 1082
MroXI	GAANNNNTTC	2 cut(s)	659, 1134
MseI	TTAA	1 cut(s)	723
MslI	CAYNNNNRTG	1 cut(s)	1139
MspI	CCGG	4 cut(s)	66, 534, 1126, 1139
MspR9I	CCNGG	3 cut(s)	534, 1126, 1127
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	2 cut(s)	561, 1134
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	5 cut(s)	155, 164, 852, 1150, 1343
NciI	CCSGG	3 cut(s)	534, 1126, 1127
NdeII	GATC	6 cut(s)	141, 247, 360, 778, 1165, 1364
NlaIII	CATG	9 cut(s)	26, 63, 450, 469, 668, 807, 1163, 1298, 1393
NmeAIII	GCCGAG	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	621
PctI	GAATGC	2 cut(s)	561, 1134
PdmI	GAANNNNTTC	2 cut(s)	659, 1134
PfeI	GAWTC	4 cut(s)	17, 580, 872, 1090
PflMI	CCANNNNNTGG	1 cut(s)	1076
PkrI	GCNGC	5 cut(s)	169, 348, 406, 1123, 1155
PleI	GAGTC	5 cut(s)	76, 181, 682, 835, 1000
PpsI	GAGTC	5 cut(s)	76, 181, 682, 835, 1000
Psp124BI	GAGCTC	2 cut(s)	628, 891
PspEI	GGTNACC	1 cut(s)	133
PspPI	GGNCC	3 cut(s)	73, 749, 1123
PsuI	RGATCY	1 cut(s)	1364
RsaI	GTAC	2 cut(s)	794, 933
RsaNI	GTAC	2 cut(s)	793, 932
RseI	CAYNNNNRTG	1 cut(s)	1139
SacI	GAGCTC	2 cut(s)	628, 891
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	5 cut(s)	168, 347, 405, 1122, 1154
Sau3AI	GATC	6 cut(s)	141, 247, 360, 778, 1165, 1364
Sau96I	GGNCC	3 cut(s)	73, 749, 1123
ScaI	AGTACT	1 cut(s)	794
SchI	GAGTC	5 cut(s)	76, 182, 683, 836, 1001
ScrFI	CCNGG	3 cut(s)	534, 1126, 1127
SduI	GDGCHC	2 cut(s)	628, 891
SfaNI	GCATC	2 cut(s)	350, 1392
SfcI	CTRYAG	1 cut(s)	831
Sfr274I	CTCGAG	1 cut(s)	621
SlaI	CTCGAG	1 cut(s)	621
SmaI	CCCGGG	1 cut(s)	1127
SmiMI	CAYNNNNRTG	1 cut(s)	1139
SmlI	CTYRAG	4 cut(s)	10, 224, 519, 621
SmoI	CTYRAG	4 cut(s)	10, 224, 519, 621
SpeI	ACTAGT	1 cut(s)	941
Sse9I	AATT	2 cut(s)	735, 744
SsiI	CCGC	7 cut(s)	165, 339, 347, 636, 1098, 1121, 1154
SspMI	CTAG	7 cut(s)	686, 809, 942, 1061, 1338, 1347, 1417
SstI	GAGCTC	2 cut(s)	628, 891
StyD4I	CCNGG	3 cut(s)	532, 1124, 1125
TaiI	ACGT	1 cut(s)	843
TaqI	TCGA	2 cut(s)	525, 622
TasI	AATT	2 cut(s)	735, 744
TatI	WGTACW	1 cut(s)	792
TauI	GCSGC	3 cut(s)	349, 1124, 1156
TfiI	GAWTC	4 cut(s)	17, 580, 872, 1090
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	1 cut(s)	1100
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	167, 404
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	435, 668
TspMI	CCCGGG	1 cut(s)	1125
TspRI	CASTG	1 cut(s)	1100
Van91I	CCANNNNNTGG	1 cut(s)	1076
XbaI	TCTAGA	1 cut(s)	1060
XhoI	CTCGAG	1 cut(s)	621
XmaI	CCCGGG	1 cut(s)	1125
XmnI	GAANNNNTTC	2 cut(s)	659, 1134
XspI	CTAG	7 cut(s)	686, 809, 942, 1061, 1338, 1347, 1417
ZrmI	AGTACT	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.