Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009707

Physical Location & Seq

Genomic Coordinates Forward (+)

36017899 .. 36021243

Gene Structure 3345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGTCAAACTCTCATGCACAGCCTCTTCTTCCTCACATAGCTCTATTCCCATGCGCCGGAATGGGCCATCTGACTCCTTTCCTCCGCCTCGCTTCCATGCTCTCCTCCTCCCAAAACTGCCTGCTCACCTTGATCACAGCCTCCCCTGCTGTTTCCGCAGCAGAGTCCACCCACATTTCCTTGTTCCTTTCTCAACACCCAAAAGTCAACCATCTCGAGTTCCATCTCATTCCCTCCGATCCAACCACCATCACCATTCCCGACCCTTTCTTTCTCCAATGGCAATCCACCAACCACTCTCTCCATCTCCTCTACCCTTCACTCGCTTCCGCATCGCCGCCTCTCTCGGCGATCTTCTCCGACTTTGTAGTAGCACCAAGTATGGGAACAATGGCTGCCCAACTCAACATTCCCAACTACATCTTCTCCCCCACTTCATGTAAGTTCTTCTGTCTCATGGCTTACCTTCCTACTCTCTTATCAAACACTTCAGATATTAGCACTCTAACTCATGTCGAAATCCCCGGCCTCGCCCCTCTGCCAATGACAAGCATTCCTCCCCCATTCAGGAATCCAAATCATAACTTCACATCACTAACACTTCAAAGCTCTCGAGCTCTCTCTACCGCGAAAGCTATCCTAATGAACACCTTCCATGAGTTTGAGTCAGACACTCTAGCTCCTATCAATGATGGCACAGCTTTACACAACATTAACCTCCCACCAATTCTCCCAATTGGGCCGTTACAAGCTTTGGACATCAAGAATGATCACCAAGACAAGTACTACCTGTCATGGCTAGACAACCAGCCGAAAGAGTCTGTAGTTTACGTTAGCTTTGGAAGCAGAACAGCTATGTCGGTTTCACAGATAAGAGAGCTCTCAAAAGGGTTGGAGACAAGTGGATATAGGTTCTTGTGGGTACTGAAGACTAGTAAAGTTGATAAGGATGATATACAAGAGGTGAGGGATATGATGGGAGAGTCATTTATGGAGAGAACAAAGAACAAGGGCATTGTATTGAAAGCTTGGGTAAGCCAGCAGGACATTCTAGAACATCCAGCCATTGGAGGGTTTGTGAATCACTGCGGTTGGAACTCGGTTATGGAAGCGGCCCGGGAAGGGATTCCGGTGCTGGCGTGGCCGCAACATGGGGATCAAAGAGTGAACGCTGAGATTGTGGAGAAGGCAGGGTTAGGGATATGGGAGAGGAAATGGGGATGGGGACTTGAAGGGTTGGCGAGTGCTGAAGAGATAAGAAATAAGATTGTGGAGCTGATGGAACATGAGAAGGTGAGGAGTTGTTCTAAAAAGGTTGGGGAAGAGGCTAGGAAAGCTAGTGGGGTTGATGGAAAATCTGAGAAGGTGGTCATGGAAATCATGCAGTCTTTGATGCAGAAGAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

470

Amino Acids

51.93

Weight (kDa)

6.31

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	266 - 400	2.7e-19	UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C	PF06722	338 - 443	4.4e-07	Erythromycin biosynthesis protein CIII-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47570 FvH4_6g47580
malus_domestica	MD17G1055700.v1.1
prunus_persica	Prupe.3G260000_v2.0.a1 Prupe.3G260100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166671 RchiOBHm_Chr2g0166701
rosa_laevigata	RLG00000021640
rosa_multiflora	Rmu_co8149328.1_g000001 Rmu_co8284467.1_g000001 Rmu_sc0002181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084310 Rroxscaffold_2G00084620
rosa_rugosa	Rorug02G0524900 Rorug02G0558700
rosa_samantha	Rh2AG591200 Rh2BG603000 Rh2CG574000 Rh2DG613800 Rh2DG613900
rosa_wichuraiana	Rw2G049240 Rw2G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccII	CGCG	1 cut(s)	629
AciI	CCGC	8 cut(s)	85, 156, 330, 338, 627, 1089, 1112, 1145
AclWI	GGATC	2 cut(s)	233, 1164
AcoI	YGGCCR	1 cut(s)	1142
AcuI	CTGAAG	3 cut(s)	474, 947, 1269
AfaI	GTAC	2 cut(s)	785, 924
AfiI	CCNNNNNNNGG	7 cut(s)	56, 383, 567, 1067, 1071, 1122, 1151
AgsI	TTSAA	3 cut(s)	605, 1024, 1232
AhlI	ACTAGT	1 cut(s)	932
AjuI	GAANNNNNNNTTGG	4 cut(s)	393, 407, 425, 439
Alw21I	GWGCWC	2 cut(s)	619, 882
Alw26I	GTCTC	2 cut(s)	458, 890
AlwI	GGATC	2 cut(s)	233, 1164
Ama87I	CYCGRG	3 cut(s)	215, 612, 1116
AoxI	GGCC	5 cut(s)	64, 526, 740, 1113, 1142
ApeKI	GCWGC	2 cut(s)	158, 395
Asp700I	GAANNNNTTC	2 cut(s)	650, 1125
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	3 cut(s)	64, 740, 1114
AsuC2I	CCSGG	3 cut(s)	525, 1117, 1118
AsuHPI	GGTGA	5 cut(s)	118, 244, 764, 976, 1306
AvaI	CYCGRG	3 cut(s)	215, 612, 1116
BanII	GRGCYC	2 cut(s)	619, 882
BbsI	GAAGAC	1 cut(s)	935
Bbv12I	GWGCWC	2 cut(s)	619, 882
BbvI	GCAGC	2 cut(s)	170, 382
BceAI	ACGGC	1 cut(s)	727
BclI	TGATCA	2 cut(s)	132, 769
BcnI	CCSGG	3 cut(s)	525, 1117, 1118
BcoDI	GTCTC	2 cut(s)	458, 890
BcuI	ACTAGT	1 cut(s)	932
BfaI	CTAG	7 cut(s)	677, 800, 933, 1052, 1329, 1338, 1408
BfmI	CTRYAG	1 cut(s)	822
BisI	GCNGC	5 cut(s)	159, 338, 396, 1113, 1145
BlsI	GCNGC	5 cut(s)	160, 339, 397, 1114, 1146
BmcAI	AGTACT	1 cut(s)	785
Bme1390I	CCNGG	3 cut(s)	525, 1117, 1118
BmeT110I	CYCGRG	3 cut(s)	215, 612, 1116
BmgT120I	GGNCC	3 cut(s)	64, 740, 1114
BmrFI	CCNGG	3 cut(s)	525, 1117, 1118
BmsI	GCATC	2 cut(s)	341, 1383
BpiI	GAAGAC	1 cut(s)	935
BpuMI	CCSGG	3 cut(s)	525, 1117, 1118
BsaJI	CCNNGG	2 cut(s)	523, 1116
BsaWI	WCCGGW	1 cut(s)	1129
BsaXI	ACNNNNNCTCC	8 cut(s)	410, 440, 664, 694, 714, 744, 1062, 1092
Bsc4I	CCNNNNNNNGG	7 cut(s)	56, 383, 567, 1067, 1071, 1122, 1151
BseDI	CCNNGG	2 cut(s)	523, 1116
BseGI	GGATG	3 cut(s)	955, 1057, 1226
BseLI	CCNNNNNNNGG	7 cut(s)	56, 383, 567, 1067, 1071, 1122, 1151
BseMII	CTCAG	2 cut(s)	1164, 1350
BseRI	GAGGAG	4 cut(s)	94, 97, 299, 1312
BseXI	GCAGC	2 cut(s)	170, 382
Bsh1236I	CGCG	1 cut(s)	629
BshFI	GGCC	5 cut(s)	66, 528, 742, 1115, 1144
BsiHKAI	GWGCWC	2 cut(s)	619, 882
BsiHKCI	CYCGRG	3 cut(s)	215, 612, 1116
BsiSI	CCGG	4 cut(s)	57, 525, 1117, 1130
BslFI	GGGAC	1 cut(s)	1239
BslI	CCNNNNNNNGG	7 cut(s)	56, 383, 567, 1067, 1071, 1122, 1151
BsmAI	GTCTC	2 cut(s)	458, 890
BsmFI	GGGAC	1 cut(s)	1239
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	5 cut(s)	66, 528, 742, 1115, 1144
BsoBI	CYCGRG	3 cut(s)	215, 612, 1116
Bsp1286I	GDGCHC	2 cut(s)	619, 882
Bsp143I	GATC	5 cut(s)	132, 238, 351, 769, 1156
BspACI	CCGC	8 cut(s)	85, 156, 330, 338, 627, 1089, 1112, 1145
BspANI	GGCC	5 cut(s)	66, 528, 742, 1115, 1144
BspCNI	CTCAG	2 cut(s)	1165, 1351
BspFNI	CGCG	1 cut(s)	629
BspPI	GGATC	2 cut(s)	233, 1164
BssECI	CCNNGG	2 cut(s)	523, 1116
BssMI	GATC	5 cut(s)	132, 238, 351, 769, 1156
Bst6I	CTCTTC	4 cut(s)	30, 1245, 1317, 1394
BstC8I	GCNNGC	3 cut(s)	122, 1040, 1137
BstDEI	CTNAG	2 cut(s)	1173, 1359
BstF5I	GGATG	3 cut(s)	955, 1057, 1226
BstFNI	CGCG	1 cut(s)	629
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	5 cut(s)	135, 241, 354, 772, 1159
BstMAI	GTCTC	2 cut(s)	458, 890
BstMBI	GATC	5 cut(s)	132, 238, 351, 769, 1156
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 155, 843, 1141, 1334
BstSCI	CCNGG	3 cut(s)	523, 1115, 1116
BstSFI	CTRYAG	1 cut(s)	822
BstUI	CGCG	1 cut(s)	629
BstV1I	GCAGC	2 cut(s)	170, 382
BstV2I	GAAGAC	1 cut(s)	935
BsuRI	GGCC	5 cut(s)	66, 528, 742, 1115, 1144
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	955, 1057, 1226
BtsI	GCAGTG	1 cut(s)	1084
BtsIMutI	CAGTG	1 cut(s)	1084
Cac8I	GCNNGC	3 cut(s)	122, 1040, 1137
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	3 cut(s)	64, 740, 1114
Cfr9I	CCCGGG	1 cut(s)	1116
Csp6I	GTAC	2 cut(s)	784, 923
CviQI	GTAC	2 cut(s)	784, 923
DdeI	CTNAG	2 cut(s)	1173, 1359
DpnI	GATC	5 cut(s)	134, 240, 353, 771, 1158
DpnII	GATC	5 cut(s)	132, 238, 351, 769, 1156
EaeI	YGGCCR	1 cut(s)	1142
Eam1104I	CTCTTC	4 cut(s)	30, 1245, 1317, 1394
EarI	CTCTTC	4 cut(s)	30, 1245, 1317, 1394
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	2 cut(s)	617, 880
Eco24I	GRGCYC	2 cut(s)	619, 882
Eco53kI	GAGCTC	2 cut(s)	617, 880
Eco57I	CTGAAG	3 cut(s)	474, 947, 1269
Eco88I	CYCGRG	3 cut(s)	215, 612, 1116
EcoICRI	GAGCTC	2 cut(s)	617, 880
EcoT38I	GRGCYC	2 cut(s)	619, 882
FaqI	GGGAC	1 cut(s)	1239
FbaI	TGATCA	2 cut(s)	132, 769
Fnu4HI	GCNGC	5 cut(s)	159, 338, 396, 1113, 1145
FokI	GGATG	3 cut(s)	962, 1044, 1233
FriOI	GRGCYC	2 cut(s)	619, 882
Fsp4HI	GCNGC	5 cut(s)	159, 338, 396, 1113, 1145
FspBI	CTAG	7 cut(s)	677, 800, 933, 1052, 1329, 1338, 1408
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	5 cut(s)	159, 338, 396, 1113, 1145
HaeIII	GGCC	5 cut(s)	66, 528, 742, 1115, 1144
HapII	CCGG	4 cut(s)	57, 525, 1117, 1130
HhaI	GCGC	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	2 cut(s)	750, 1026
HinfI	GANTC	8 cut(s)	73, 164, 571, 665, 818, 983, 1081, 1126
HpaII	CCGG	4 cut(s)	57, 525, 1117, 1130
HphI	GGTGA	5 cut(s)	118, 244, 764, 976, 1306
Hpy166II	GTNNAC	4 cut(s)	168, 208, 829, 1168
Hpy188I	TCNGA	6 cut(s)	72, 238, 361, 493, 670, 1360
Hpy188III	TCNNGA	6 cut(s)	215, 260, 568, 612, 763, 1052
Hpy8I	GTNNAC	4 cut(s)	168, 208, 829, 1168
HpyAV	CCTTC	8 cut(s)	327, 476, 661, 1115, 1180, 1226, 1285, 1357
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	3 cut(s)	17, 1384, 1396
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 155, 843, 1141, 1334
HpyF3I	CTNAG	2 cut(s)	1173, 1359
HpySE526I	ACGT	1 cut(s)	831
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	2 cut(s)	132, 769
Kzo9I	GATC	5 cut(s)	132, 238, 351, 769, 1156
LmnI	GCTCC	2 cut(s)	685, 1273
Lsp1109I	GCAGC	2 cut(s)	170, 382
LweI	GCATC	2 cut(s)	341, 1383
MaeI	CTAG	7 cut(s)	677, 800, 933, 1052, 1329, 1338, 1408
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	1 cut(s)	744
MalI	GATC	5 cut(s)	134, 240, 353, 771, 1158
MboI	GATC	5 cut(s)	132, 238, 351, 769, 1156
MboII	GAAGA	8 cut(s)	17, 20, 346, 415, 439, 940, 1262, 1334
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	2 cut(s)	619, 882
MluCI	AATT	2 cut(s)	726, 735
MlyI	GAGTC	5 cut(s)	67, 173, 674, 827, 992
MmeI	TCCRAC	4 cut(s)	266, 384, 873, 1073
MroXI	GAANNNNTTC	2 cut(s)	650, 1125
MseI	TTAA	1 cut(s)	714
MspI	CCGG	4 cut(s)	57, 525, 1117, 1130
MspR9I	CCNGG	3 cut(s)	525, 1117, 1118
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	552
MvnI	CGCG	1 cut(s)	629
MwoI	GCNNNNNNNGC	5 cut(s)	146, 155, 843, 1141, 1334
NciI	CCSGG	3 cut(s)	525, 1117, 1118
NdeII	GATC	5 cut(s)	132, 238, 351, 769, 1156
NmeAIII	GCCGAG	1 cut(s)	326
PaeR7I	CTCGAG	2 cut(s)	215, 612
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	2 cut(s)	650, 1125
PfeI	GAWTC	3 cut(s)	571, 1081, 1126
PflMI	CCANNNNNTGG	1 cut(s)	1067
PkrI	GCNGC	5 cut(s)	160, 339, 397, 1114, 1146
PleI	GAGTC	5 cut(s)	67, 172, 673, 826, 991
PpsI	GAGTC	5 cut(s)	67, 172, 673, 826, 991
Psp124BI	GAGCTC	2 cut(s)	619, 882
PspPI	GGNCC	3 cut(s)	64, 740, 1114
RsaI	GTAC	2 cut(s)	785, 924
RsaNI	GTAC	2 cut(s)	784, 923
SacI	GAGCTC	2 cut(s)	619, 882
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	5 cut(s)	159, 338, 396, 1113, 1145
Sau3AI	GATC	5 cut(s)	132, 238, 351, 769, 1156
Sau96I	GGNCC	3 cut(s)	64, 740, 1114
ScaI	AGTACT	1 cut(s)	785
SchI	GAGTC	5 cut(s)	67, 173, 674, 827, 992
ScrFI	CCNGG	3 cut(s)	525, 1117, 1118
SduI	GDGCHC	2 cut(s)	619, 882
SfaNI	GCATC	2 cut(s)	341, 1383
SfcI	CTRYAG	1 cut(s)	822
Sfr274I	CTCGAG	2 cut(s)	215, 612
SlaI	CTCGAG	2 cut(s)	215, 612
SmaI	CCCGGG	1 cut(s)	1118
SmlI	CTYRAG	2 cut(s)	215, 612
SmoI	CTYRAG	2 cut(s)	215, 612
SpeI	ACTAGT	1 cut(s)	932
Sse9I	AATT	2 cut(s)	726, 735
SsiI	CCGC	8 cut(s)	85, 156, 330, 338, 627, 1089, 1112, 1145
SspMI	CTAG	7 cut(s)	677, 800, 933, 1052, 1329, 1338, 1408
SstI	GAGCTC	2 cut(s)	619, 882
StyD4I	CCNGG	3 cut(s)	523, 1115, 1116
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	3 cut(s)	216, 516, 613
TasI	AATT	2 cut(s)	726, 735
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	3 cut(s)	340, 1115, 1147
TfiI	GAWTC	3 cut(s)	571, 1081, 1126
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	1 cut(s)	1091
TseI	GCWGC	2 cut(s)	158, 395
TspDTI	ATGAA	2 cut(s)	426, 659
TspMI	CCCGGG	1 cut(s)	1116
TspRI	CASTG	1 cut(s)	1091
Van91I	CCANNNNNTGG	1 cut(s)	1067
XbaI	TCTAGA	1 cut(s)	1051
XhoI	CTCGAG	2 cut(s)	215, 612
XmaI	CCCGGG	1 cut(s)	1116
XmnI	GAANNNNTTC	2 cut(s)	650, 1125
XspI	CTAG	7 cut(s)	677, 800, 933, 1052, 1329, 1338, 1408
ZrmI	AGTACT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.