Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009707

Physical Location & Seq

Genomic Coordinates Reverse (-)

65517504 .. 65518362

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0524900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCATTCTATGGCTTCTCGCCTTCCTCTGCGAGTCTTGGTTTGCCTTCAATTGGTTTCTCAACCTCATCACCCTATGGAATCCCATGCATGGATTACAAAACGTACCCCAACAATCTCTTGCAACAGGTGCCGGAGCTTCCTGCGATGGACGTTTTTGTATCAACGGCAGATCCAATGCTAGCGCCGCCTATCGTCACAGTGAACAGTGTCCTGATGAGCATGAAAATCTCTGCCAAAAGATTAAAGACAGGCCACCATTCGGTCCCCCCTGATATTTCTGGAGACTTTGCAACTATTGCTCACAAAACAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

105

Amino Acids

11.2

Weight (kDa)

6.23

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47570 FvH4_6g47580
malus_domestica	MD17G1055700.v1.1
prunus_persica	Prupe.3G260000_v2.0.a1 Prupe.3G260100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166671 RchiOBHm_Chr2g0166701
rosa_laevigata	RLG00000021640
rosa_multiflora	Rmu_co8149328.1_g000001 Rmu_co8284467.1_g000001 Rmu_sc0002181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084310 Rroxscaffold_2G00084620
rosa_rugosa	Rorug02G0524900 Rorug02G0558700
rosa_samantha	Rh2AG591200 Rh2BG603000 Rh2CG574000 Rh2DG613800 Rh2DG613900
rosa_wichuraiana	Rw2G049240 Rw2G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	3 cut(s)	53, 91, 262
AgsI	TTSAA	1 cut(s)	51
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	63
AsuNHI	GCTAGC	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	130
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	188
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	132, 267
BmtI	GCTAGC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 91, 262
BseLI	CCNNNNNNNGG	3 cut(s)	53, 91, 262
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	3 cut(s)	53, 91, 262
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	132, 267
BspOI	GCTAGC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	130
BssMI	GATC	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	202, 209
BstAPI	GCANNNNNTGC	2 cut(s)	130, 299
BstC8I	GCNNGC	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 187, 299
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	207, 214
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	3 cut(s)	87, 91, 223
CviJI	RGCY	3 cut(s)	15, 139, 255
CviKI_1	RGCY	3 cut(s)	15, 139, 255
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	265
EcoT22I	ATGCAT	1 cut(s)	92
FaeI	CATG	3 cut(s)	90, 94, 226
FaiI	YATR	5 cut(s)	12, 78, 88, 92, 224
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	3 cut(s)	86, 90, 222
Fnu4HI	GCNGC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	3 cut(s)	90, 94, 226
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	34, 81
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	214, 282
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	33, 57
HpyCH4III	ACNGT	2 cut(s)	202, 209
HpyCH4IV	ACGT	2 cut(s)	104, 153
HpyCH4V	TGCA	3 cut(s)	90, 124, 293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 187, 299
HpySE526I	ACGT	2 cut(s)	104, 153
Hsp92II	CATG	3 cut(s)	90, 94, 226
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	7 cut(s)	113, 147, 156, 227, 237, 267, 285
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	2 cut(s)	104, 153
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	37, 76
Mph1103I	ATGCAT	1 cut(s)	92
MseI	TTAA	1 cut(s)	245
MspI	CCGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	3 cut(s)	130, 187, 299
NdeII	GATC	1 cut(s)	172
NheI	GCTAGC	1 cut(s)	181
NlaIII	CATG	3 cut(s)	90, 94, 226
NlaIV	GGNNCC	2 cut(s)	132, 267
NmuCI	GTSAC	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	92
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	132, 267
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	43
SetI	ASST	5 cut(s)	68, 107, 132, 141, 156
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	202, 209
TaiI	ACGT	2 cut(s)	107, 156
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	1 cut(s)	51
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	2 cut(s)	207, 214
TseFI	GTSAC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	2 cut(s)	207, 214
VpaK11BI	GGWCC	1 cut(s)	265
XspI	CTAG	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.