Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8284467.1

Orthogroup ID

OG0009707

Physical Location & Seq

Genomic Coordinates Reverse (-)

476 .. 781

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8284467.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggaagcagcccaagaagggataccggtgctggcgtggccgcaacacagcgatcaaagagtgaacgctgagattgtggagaaggcagggttagggatatgggagagcaaatggggttggggacttgaagggttggtaagtggtgaagagataggaaataagattgtggagctaatggaaaatcagaaggtgagggaattttctagaaatgttggggaaaaggctaggaaagctagtgggattggtggaaaatcagagaaggtggtcatggaaatcatggagtctttgatgcagaagaggaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

101

Amino Acids

11.25

Weight (kDa)

5.5

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47570 FvH4_6g47580
malus_domestica	MD17G1055700.v1.1
prunus_persica	Prupe.3G260000_v2.0.a1 Prupe.3G260100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166671 RchiOBHm_Chr2g0166701
rosa_laevigata	RLG00000021640
rosa_multiflora	Rmu_co8149328.1_g000001 Rmu_co8284467.1_g000001 Rmu_sc0002181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084310 Rroxscaffold_2G00084620
rosa_rugosa	Rorug02G0524900 Rorug02G0558700
rosa_samantha	Rh2AG591200 Rh2BG603000 Rh2CG574000 Rh2DG613800 Rh2DG613900
rosa_wichuraiana	Rw2G049240 Rw2G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgeI	ACCGGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	128
AluBI	AGCT	2 cut(s)	172, 233
AluI	AGCT	2 cut(s)	172, 233
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	197
AsiGI	ACCGGT	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	155, 202
BbvI	GCAGC	1 cut(s)	20
BciVI	GTATCC	1 cut(s)	15
BfaI	CTAG	4 cut(s)	204, 225, 234, 304
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	2 cut(s)	9, 41
BlsI	GCNGC	2 cut(s)	10, 42
BmsI	GCATC	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse118I	RCCGGY	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	40
BshTI	ACCGGT	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	141, 290
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 230
BstV1I	GCAGC	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	25
CspAI	ACCGGT	1 cut(s)	25
CviAII	CATG	2 cut(s)	268, 277
CviJI	RGCY	5 cut(s)	11, 40, 172, 224, 233
CviKI_1	RGCY	5 cut(s)	11, 40, 172, 224, 233
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	2 cut(s)	141, 290
EarI	CTCTTC	2 cut(s)	141, 290
FaeI	CATG	2 cut(s)	271, 280
FaiI	YATR	3 cut(s)	100, 269, 278
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	2 cut(s)	267, 276
Fnu4HI	GCNGC	2 cut(s)	9, 41
Fsp4HI	GCNGC	2 cut(s)	9, 41
FspBI	CTAG	4 cut(s)	204, 225, 234, 304
GluI	GCNGC	2 cut(s)	9, 41
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	2 cut(s)	271, 280
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	155, 202
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	186, 256
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	5 cut(s)	11, 76, 122, 181, 253
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 230
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	271, 280
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	3 cut(s)	17, 39, 72
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	4 cut(s)	204, 225, 234, 304
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	2 cut(s)	186, 291
MspI	CCGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	37, 230
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	271, 280
PinAI	ACCGGT	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	10, 42
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
SatI	GCNGC	2 cut(s)	9, 41
Sau3AI	GATC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	290
SetI	ASST	4 cut(s)	174, 192, 235, 264
SfaNI	GCATC	1 cut(s)	279
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	4 cut(s)	204, 225, 234, 304
TasI	AATT	1 cut(s)	197
TauI	GCSGC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	197
XbaI	TCTAGA	1 cut(s)	203
XspI	CTAG	4 cut(s)	204, 225, 234, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.