Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009707

Physical Location & Seq

Genomic Coordinates Forward (+)

76934423 .. 76935832

Gene Structure 1410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021640

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGACAAACTCAACAGATTCTCAAGCACTACTTCCTCACATAGCTCTATTCCCATGCGCCGGAATGGGCCATCTGACCCCCTTCCTCCGCCTCGCTTCCATGCTCTCCTCCTCCCAAAACTGTCTGGTCACCTTGATCACAGCCTCCCCTGCTGTGTCTGCAGCAGAGTCCACCCACATTTCCTTGTTCCTTTCTCAACACCCAAAAGTCAACCATCTTGAGTTGCAACTCATTCCCTCCAATCCAACCACCATCACCATTGACGACCCTTTCTTTCTCCAATGGCAATCTACCAACCGCTCTCTCCATCTCCTCTACCCTTCACTCGCTTCCTCATCGCCGCCGCTCTCGGCCATCTTCTCTGACTTTGTAGTAGCATCAAGTATGGGCACAATCGCTGCCCAACTCAATATTCCCAACTACGTCGTCTCCCCCACTTCATGTAAGTTCTTCTGTCTCATGGCTTACCTTCCGACTCTCTTATCAAACACCTCAGCTATTAGTACTCTCACTCAAGTCAACATCCCGGGCCTCGCCCCTTTGCCAATGACAAGCATTCCTCCCCCATTTAGGAATCCAAATCATATTTTCACATCACTAATACTTCAAAGCTCTCGAGCTCTCTCCAGCGCGAAAGGGATCCTAATGAACACCTTCCATGATTTTGAGTCAGACACTCTGGCCGCTATCAATGATGGCAGATCTTTAACCAACATTAATCTCCCACCAATCCTCCCAATTGGGCCGTTACAAGCTTTCGAGCTCAAGAACGACCAAGACAGGTACTATTTGTCATGGCTAGACAACCAACCAAAAGAGTCGGTAGTTTATGTGAGTTTTGGAAGCAGAACAGCTATGTCAGATTCGCAGATAAGAGAGTTTTCAAGGGGGTTGGAGACAAGTGGATATAGGTTTTTGTGGGTACTGAAAACCAGTAAAGTTGATAAAGATGATATACAAGAGGTGAAAGATATGGTCGGAGAGTCATTTCTGGAAAGAACAAAGAATAAGGGAATTGTATTAAAAGCGTGGGTAAGCCAACAGGACATTCTGGAACATCCAGCCATTGGAGGGTTTGTGAATCACTGCGGGTGGAACTCGGTTATGGAAGCAGCCCAAGAAGGGATACCGGTGTTGGCGTGGCCGCAACACGGCGATCAAAGCGTGAACGCTGAGATTGTGGAGAAGGCAGGGTTAGGGATATGGGAGAGCAAATGGGGTTGGGGACTTGAAGGGTTGGTAAGTGGTGAAGAGATAGGAAATAAGATTGTGGAGCTAATGGAAAATCAGAAGGTGAGGGGATTTTCTAGAAATGTTGGGGAAAAGGCTAGGAAAGCTAGTGGGATTGATGGAAAATCAGAGAAGGTGGTCATGGAACTCATGGAGTCCTTGATGCAGAAGAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

470

Amino Acids

51.53

Weight (kDa)

5.9

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	269 - 399	2.6e-19	UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C	PF06722	338 - 405	7.4e-06	Erythromycin biosynthesis protein CIII-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47570 FvH4_6g47580
malus_domestica	MD17G1055700.v1.1
prunus_persica	Prupe.3G260000_v2.0.a1 Prupe.3G260100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166671 RchiOBHm_Chr2g0166701
rosa_laevigata	RLG00000021640
rosa_multiflora	Rmu_co8149328.1_g000001 Rmu_co8284467.1_g000001 Rmu_sc0002181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084310 Rroxscaffold_2G00084620
rosa_rugosa	Rorug02G0524900 Rorug02G0558700
rosa_samantha	Rh2AG591200 Rh2BG603000 Rh2CG574000 Rh2DG613800 Rh2DG613900
rosa_wichuraiana	Rw2G049240 Rw2G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccBSI	CCGCTC	2 cut(s)	300, 346
AccII	CGCG	1 cut(s)	632
AciI	CCGC	7 cut(s)	88, 298, 341, 344, 684, 1089, 1145
AclWI	GGATC	2 cut(s)	634, 647
AcoI	YGGCCR	3 cut(s)	351, 681, 1142
AfaI	GTAC	3 cut(s)	505, 785, 924
AfiI	CCNNNNNNNGG	6 cut(s)	59, 570, 1067, 1071, 1122, 1151
AgeI	ACCGGT	1 cut(s)	1129
AgsI	TTSAA	3 cut(s)	608, 885, 1232
AjuI	GAANNNNNNNTTGG	4 cut(s)	396, 428, 1032, 1064
AluBI	AGCT	9 cut(s)	44, 497, 612, 620, 755, 763, 854, 1276, 1337
AluI	AGCT	9 cut(s)	44, 497, 612, 620, 755, 763, 854, 1276, 1337
Alw21I	GWGCWC	2 cut(s)	622, 765
Alw26I	GTCTC	3 cut(s)	433, 461, 890
AlwI	GGATC	2 cut(s)	634, 647
Ama87I	CYCGRG	2 cut(s)	526, 615
AoxI	GGCC	6 cut(s)	67, 351, 529, 681, 743, 1142
ApeKI	GCWGC	3 cut(s)	161, 398, 1112
AseI	ATTAAT	1 cut(s)	717
AsiGI	ACCGGT	1 cut(s)	1129
Asp700I	GAANNNNTTC	1 cut(s)	653
AspLEI	GCGC	2 cut(s)	59, 632
AspS9I	GGNCC	3 cut(s)	67, 529, 743
AsuC2I	CCSGG	2 cut(s)	527, 528
AsuHPI	GGTGA	5 cut(s)	121, 247, 976, 1259, 1306
AvaI	CYCGRG	2 cut(s)	526, 615
BaeGI	GKGCMC	1 cut(s)	392
BaeI	ACNNNNGTAYC	2 cut(s)	1118, 1151
BamHI	GGATCC	1 cut(s)	639
BanII	GRGCYC	2 cut(s)	622, 765
Bbv12I	GWGCWC	2 cut(s)	622, 765
BbvCI	CCTCAGC	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	173, 385, 1124
BccI	CCATC	7 cut(s)	78, 222, 260, 315, 362, 689, 1343
BceAI	ACGGC	2 cut(s)	730, 1168
BciVI	GTATCC	1 cut(s)	1119
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	2 cut(s)	527, 528
BcoDI	GTCTC	3 cut(s)	433, 461, 890
BfaI	CTAG	5 cut(s)	800, 1308, 1329, 1338, 1408
BfmI	CTRYAG	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	1119
BglII	AGATCT	1 cut(s)	701
BisI	GCNGC	7 cut(s)	162, 341, 344, 399, 684, 1113, 1145
BlsI	GCNGC	7 cut(s)	163, 342, 345, 400, 685, 1114, 1146
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	2 cut(s)	527, 528
BmeT110I	CYCGRG	2 cut(s)	526, 615
BmgT120I	GGNCC	3 cut(s)	67, 529, 743
BmiI	GGNNCC	1 cut(s)	641
BmrFI	CCNGG	2 cut(s)	527, 528
BmsI	GCATC	2 cut(s)	386, 1383
BpmI	CTGGAG	1 cut(s)	610
Bpu10I	CCTNAGC	1 cut(s)	493
BpuEI	CTTGAG	4 cut(s)	6, 239, 498, 749
BpuMI	CCSGG	2 cut(s)	527, 528
BsaJI	CCNNGG	1 cut(s)	526
BsaWI	WCCGGW	1 cut(s)	1129
BsaXI	ACNNNNNCTCC	6 cut(s)	413, 443, 717, 747, 1062, 1092
Bsc4I	CCNNNNNNNGG	6 cut(s)	59, 570, 1067, 1071, 1122, 1151
Bse118I	RCCGGY	1 cut(s)	1129
Bse1I	ACTGG	1 cut(s)	933
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	522, 1057
BseLI	CCNNNNNNNGG	6 cut(s)	59, 570, 1067, 1071, 1122, 1151
BseMII	CTCAG	2 cut(s)	507, 1164
BseNI	ACTGG	1 cut(s)	933
BseRI	GAGGAG	3 cut(s)	97, 100, 302
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	173, 385, 1124
Bsh1236I	CGCG	1 cut(s)	632
BshFI	GGCC	6 cut(s)	69, 353, 531, 683, 745, 1144
BshTI	ACCGGT	1 cut(s)	1129
BsiHKAI	GWGCWC	2 cut(s)	622, 765
BsiHKCI	CYCGRG	2 cut(s)	526, 615
BsiSI	CCGG	3 cut(s)	60, 527, 1130
BslFI	GGGAC	1 cut(s)	1239
BslI	CCNNNNNNNGG	6 cut(s)	59, 570, 1067, 1071, 1122, 1151
BsmAI	GTCTC	3 cut(s)	433, 461, 890
BsmBI	CGTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	1239
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	6 cut(s)	69, 353, 531, 683, 745, 1144
BsoBI	CYCGRG	2 cut(s)	526, 615
Bsp1286I	GDGCHC	3 cut(s)	392, 622, 765
Bsp143I	GATC	4 cut(s)	135, 639, 701, 1156
BspACI	CCGC	7 cut(s)	88, 298, 341, 344, 684, 1089, 1145
BspANI	GGCC	6 cut(s)	69, 353, 531, 683, 745, 1144
BspCNI	CTCAG	2 cut(s)	506, 1165
BspFNI	CGCG	1 cut(s)	632
BspLI	GGNNCC	1 cut(s)	641
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	2 cut(s)	634, 647
BsrBI	CCGCTC	2 cut(s)	300, 346
BsrFI	RCCGGY	1 cut(s)	1129
BsrI	ACTGG	1 cut(s)	933
BssAI	RCCGGY	1 cut(s)	1129
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	4 cut(s)	135, 639, 701, 1156
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	1245, 1394
BstDEI	CTNAG	2 cut(s)	493, 1173
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	522, 1057
BstFNI	CGCG	1 cut(s)	632
BstHHI	GCGC	2 cut(s)	59, 632
BstKTI	GATC	4 cut(s)	138, 642, 704, 1159
BstMAI	GTCTC	3 cut(s)	433, 461, 890
BstMBI	GATC	4 cut(s)	135, 639, 701, 1156
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 158, 1161, 1334
BstPI	GGTNACC	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	525, 526
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	632
BstV1I	GCAGC	3 cut(s)	173, 385, 1124
BstX2I	RGATCY	2 cut(s)	639, 701
BstYI	RGATCY	2 cut(s)	639, 701
BsuI	GTATCC	1 cut(s)	1119
BsuRI	GGCC	6 cut(s)	69, 353, 531, 683, 745, 1144
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	522, 1057
BtsI	GCAGTG	1 cut(s)	1084
BtsIMutI	CAGTG	1 cut(s)	1084
CfoI	GCGC	2 cut(s)	59, 632
Cfr10I	RCCGGY	1 cut(s)	1129
Cfr13I	GGNCC	3 cut(s)	67, 529, 743
Cfr9I	CCCGGG	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	504, 784, 923
CspAI	ACCGGT	1 cut(s)	1129
CviAII	CATG	8 cut(s)	54, 100, 441, 460, 659, 795, 1372, 1381
CviQI	GTAC	3 cut(s)	504, 784, 923
DdeI	CTNAG	2 cut(s)	493, 1173
DpnI	GATC	4 cut(s)	137, 641, 703, 1158
DpnII	GATC	4 cut(s)	135, 639, 701, 1156
EaeI	YGGCCR	3 cut(s)	351, 681, 1142
Eam1104I	CTCTTC	2 cut(s)	1245, 1394
EarI	CTCTTC	2 cut(s)	1245, 1394
EciI	GGCGGA	1 cut(s)	77
Ecl136II	GAGCTC	2 cut(s)	620, 763
Eco24I	GRGCYC	2 cut(s)	622, 765
Eco53kI	GAGCTC	2 cut(s)	620, 763
Eco88I	CYCGRG	2 cut(s)	526, 615
Eco91I	GGTNACC	1 cut(s)	127
EcoICRI	GAGCTC	2 cut(s)	620, 763
EcoO65I	GGTNACC	1 cut(s)	127
EcoT38I	GRGCYC	2 cut(s)	622, 765
Esp3I	CGTCTC	1 cut(s)	433
FaeI	CATG	8 cut(s)	57, 103, 444, 463, 662, 798, 1375, 1384
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	1 cut(s)	1239
FatI	CATG	8 cut(s)	53, 99, 440, 459, 658, 794, 1371, 1380
FauI	CCCGC	1 cut(s)	1082
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	7 cut(s)	162, 341, 344, 399, 684, 1113, 1145
FokI	GGATG	2 cut(s)	509, 1044
FriOI	GRGCYC	2 cut(s)	622, 765
Fsp4HI	GCNGC	7 cut(s)	162, 341, 344, 399, 684, 1113, 1145
FspBI	CTAG	5 cut(s)	800, 1308, 1329, 1338, 1408
GlaI	GCGC	2 cut(s)	58, 631
GluI	GCNGC	7 cut(s)	162, 341, 344, 399, 684, 1113, 1145
GsuI	CTGGAG	1 cut(s)	610
HaeIII	GGCC	6 cut(s)	69, 353, 531, 683, 745, 1144
HapII	CCGG	3 cut(s)	60, 527, 1130
HhaI	GCGC	2 cut(s)	59, 632
Hin1II	CATG	8 cut(s)	57, 103, 444, 463, 662, 798, 1375, 1384
Hin6I	GCGC	2 cut(s)	57, 630
HinP1I	GCGC	2 cut(s)	57, 630
HincII	GTYRAC	2 cut(s)	211, 520
HindII	GTYRAC	2 cut(s)	211, 520
HindIII	AAGCTT	1 cut(s)	753
HpaII	CCGG	3 cut(s)	60, 527, 1130
HphI	GGTGA	5 cut(s)	121, 247, 976, 1259, 1306
Hpy166II	GTNNAC	4 cut(s)	171, 211, 520, 1168
Hpy188I	TCNGA	8 cut(s)	75, 364, 474, 673, 862, 980, 1290, 1360
Hpy188III	TCNNGA	6 cut(s)	218, 615, 766, 992, 1052, 1308
Hpy8I	GTNNAC	4 cut(s)	171, 211, 520, 1168
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	9 cut(s)	91, 330, 479, 664, 1115, 1180, 1226, 1285, 1357
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	161, 226, 1396
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 158, 1161, 1334
HpyF3I	CTNAG	2 cut(s)	493, 1173
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	8 cut(s)	57, 103, 444, 463, 662, 798, 1375, 1384
HspAI	GCGC	2 cut(s)	57, 630
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	135, 639, 701, 1156
LmnI	GCTCC	1 cut(s)	1273
Lsp1109I	GCAGC	3 cut(s)	173, 385, 1124
LweI	GCATC	2 cut(s)	386, 1383
MaeI	CTAG	5 cut(s)	800, 1308, 1329, 1338, 1408
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	127, 747
MalI	GATC	4 cut(s)	137, 641, 703, 1158
MbiI	CCGCTC	2 cut(s)	300, 346
MboI	GATC	4 cut(s)	135, 639, 701, 1156
MboII	GAAGA	3 cut(s)	349, 442, 1262
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	2 cut(s)	639, 701
MhlI	GDGCHC	3 cut(s)	392, 622, 765
MluCI	AATT	2 cut(s)	738, 1014
MlyI	GAGTC	6 cut(s)	176, 469, 677, 827, 992, 1394
MmeI	TCCRAC	4 cut(s)	269, 497, 873, 958
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	3 cut(s)	707, 717, 1022
MspI	CCGG	3 cut(s)	60, 527, 1130
MspR9I	CCNGG	2 cut(s)	527, 528
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	555
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	4 cut(s)	149, 158, 1161, 1334
NciI	CCSGG	2 cut(s)	527, 528
NdeII	GATC	4 cut(s)	135, 639, 701, 1156
NlaIII	CATG	8 cut(s)	57, 103, 444, 463, 662, 798, 1375, 1384
NlaIV	GGNNCC	1 cut(s)	641
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	127
PaeR7I	CTCGAG	1 cut(s)	615
PctI	GAATGC	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	4 cut(s)	17, 574, 863, 1081
PflMI	CCANNNNNTGG	1 cut(s)	1067
PinAI	ACCGGT	1 cut(s)	1129
PkrI	GCNGC	7 cut(s)	163, 342, 345, 400, 685, 1114, 1146
PleI	GAGTC	6 cut(s)	175, 469, 676, 826, 991, 1393
PpsI	GAGTC	6 cut(s)	175, 469, 676, 826, 991, 1393
PshBI	ATTAAT	1 cut(s)	717
Psp124BI	GAGCTC	2 cut(s)	622, 765
PspEI	GGTNACC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	641
PspPI	GGNCC	3 cut(s)	67, 529, 743
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	639, 701
RsaI	GTAC	3 cut(s)	505, 785, 924
RsaNI	GTAC	3 cut(s)	504, 784, 923
SacI	GAGCTC	2 cut(s)	622, 765
SaqAI	TTAA	3 cut(s)	707, 717, 1022
SatI	GCNGC	7 cut(s)	162, 341, 344, 399, 684, 1113, 1145
Sau3AI	GATC	4 cut(s)	135, 639, 701, 1156
Sau96I	GGNCC	3 cut(s)	67, 529, 743
ScaI	AGTACT	1 cut(s)	505
SchI	GAGTC	6 cut(s)	176, 469, 677, 827, 992, 1394
ScrFI	CCNGG	2 cut(s)	527, 528
SduI	GDGCHC	3 cut(s)	392, 622, 765
SfaNI	GCATC	2 cut(s)	386, 1383
SfcI	CTRYAG	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	615
SlaI	CTCGAG	1 cut(s)	615
SmaI	CCCGGG	1 cut(s)	528
SmlI	CTYRAG	5 cut(s)	21, 218, 513, 615, 764
SmoI	CTYRAG	5 cut(s)	21, 218, 513, 615, 764
Sse9I	AATT	2 cut(s)	738, 1014
SsiI	CCGC	7 cut(s)	88, 298, 341, 344, 684, 1089, 1145
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	5 cut(s)	800, 1308, 1329, 1338, 1408
SstI	GAGCTC	2 cut(s)	622, 765
StyD4I	CCNGG	2 cut(s)	525, 526
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	616, 759
TasI	AATT	2 cut(s)	738, 1014
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	4 cut(s)	343, 346, 686, 1147
TfiI	GAWTC	4 cut(s)	17, 574, 863, 1081
Tru1I	TTAA	3 cut(s)	707, 717, 1022
Tru9I	TTAA	3 cut(s)	707, 717, 1022
TscAI	CASTG	1 cut(s)	1091
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	3 cut(s)	161, 398, 1112
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	429, 662
TspMI	CCCGGG	1 cut(s)	526
TspRI	CASTG	1 cut(s)	1091
Van91I	CCANNNNNTGG	1 cut(s)	1067
VspI	ATTAAT	1 cut(s)	717
XbaI	TCTAGA	1 cut(s)	1307
XhoI	CTCGAG	1 cut(s)	615
XmaI	CCCGGG	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	5 cut(s)	800, 1308, 1329, 1338, 1408
ZrmI	AGTACT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.