Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009707

Physical Location & Seq

Genomic Coordinates Forward (+)

76759216 .. 76760631

Gene Structure 1416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTCAGACTTAACAGATTCTCAAGCACTTCGTCTTCTTCCTCACATTGCTCTATTCCCATGCGCCGGAATGGGCCATCTGACCCCCTTCCTCCGCCTCGCTTCCAGGCTCTCCTCCTCCCAAAACTGTCTGGTCACCTTGATCACAGCCTCCCCTGCTGTGTCTGCAGCTGAGTCCACCCACATTTCCTTGTTCCTTTCTCAACATCCAAAAGTCAACCATCTTGAGTTCCAACTCATTCCCTCCAATCCCACCACCACCACCATGGACGACCCTTTCTTTCTCCAATGGCAATCCACCAACCGCTCTCTCCATCTCCTCTACCCCTCACTCGCTTCCTCATCACCGCCTCTCTCGGCGATCTTCTCTGACGTCGTACTAGCATCAAGTATGGGAACAATCGCTGCCCAACTCAACATTCCCAACTACATCTTCTCCCCCACTTCATGTAAGTTCTTCAGTCTCGCGGCTTACCTGCCGACTCTCTTATCAAACACTTCAGATATTAGTTCTCTCACTCAAGTCAACATACAAGGCCTCACCCCTTTGCCAATGACAAGCATTCCCCCCCCACTTAGGAATCAAAATCATATTTTCACATCACTAATACTTCAAAGCTCTCGAGCTCTTTCTAGCGCGAAAGGGATCCTAATGAACACCTTCCATGATTTTGATAAAGTTGATAAAGATGATATACAAGAGGTGAAAGATATGGTCGGACAGTCATTTCTGGAAAGAACAAAGAACAAGGGAATTGTATTAAAAGCGTGGGTAAGCCAACAGGAAATTCTGGAACATCCAGCCATTGGAGGGTTTGTGAATCACTGCGGGTGGAACTCGGTTATGGAAGCAGCCCAAGAAGGGATACCGGTGCTGGCGTGGCCGCAACACAGCGATCAAAGCGTGAACGCTGAGATTGTGGAGAAGGCAGGGTTAGGGATATGGGAGAGCAAATGGGGTTGGGGACTTGAAGGGTTGGTAAGTGGTGAAGAGATAGGAAATAAGATTACGGAGCTAATGGAAAATCAGAAGGTGAGGGAATCTTCTAGAAATGTTGGGGAAAAGGCTAGGAAAGCTAGTGGGATTGGTGGAAAATCAGAGAAGGTGGTCATGGAAATCATGGAGTCTTTGATGCAGAAGAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

382

Amino Acids

41.82

Weight (kDa)

6.13

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EryCIII-like_C	PF06722	252 - 355	4.2e-07	Erythromycin biosynthesis protein CIII-like, C-terminal domain
UDPGT	PF00201	253 - 313	2.3e-13	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47570 FvH4_6g47580
malus_domestica	MD17G1055700.v1.1
prunus_persica	Prupe.3G260000_v2.0.a1 Prupe.3G260100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166671 RchiOBHm_Chr2g0166701
rosa_laevigata	RLG00000021640
rosa_multiflora	Rmu_co8149328.1_g000001 Rmu_co8284467.1_g000001 Rmu_sc0002181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084310 Rroxscaffold_2G00084620
rosa_rugosa	Rorug02G0524900 Rorug02G0558700
rosa_samantha	Rh2AG591200 Rh2BG603000 Rh2CG574000 Rh2DG613800 Rh2DG613900
rosa_wichuraiana	Rw2G049240 Rw2G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	375
Acc36I	ACCTGC	1 cut(s)	483
AccB7I	CCANNNNNTGG	1 cut(s)	806
AccBSI	CCGCTC	1 cut(s)	306
AccII	CGCG	2 cut(s)	467, 638
AciI	CCGC	6 cut(s)	94, 304, 347, 467, 828, 884
AclWI	GGATC	2 cut(s)	640, 653
AcoI	YGGCCR	1 cut(s)	881
AcsI	RAATTY	1 cut(s)	786
AcuI	CTGAAG	2 cut(s)	442, 483
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	5 cut(s)	65, 576, 806, 810, 861
AgeI	ACCGGT	1 cut(s)	868
AgsI	TTSAA	2 cut(s)	614, 971
AjnI	CCWGG	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	6 cut(s)	402, 416, 434, 448, 771, 803
AluBI	AGCT	5 cut(s)	170, 618, 626, 1015, 1076
AluI	AGCT	5 cut(s)	170, 618, 626, 1015, 1076
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	640, 653
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	3 cut(s)	73, 535, 881
ApeKI	GCWGC	3 cut(s)	167, 404, 851
ApoI	RAATTY	1 cut(s)	786
AsiGI	ACCGGT	1 cut(s)	868
Asp700I	GAANNNNTTC	1 cut(s)	659
AspLEI	GCGC	2 cut(s)	65, 638
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	6 cut(s)	127, 336, 532, 715, 998, 1045
AvaI	CYCGRG	1 cut(s)	621
BamHI	GGATCC	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	628
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	3 cut(s)	179, 391, 863
BccI	CCATC	3 cut(s)	84, 228, 321
BciT130I	CCWGG	1 cut(s)	106
BciVI	GTATCC	1 cut(s)	858
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	6 cut(s)	380, 633, 1047, 1068, 1077, 1147
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	858
BisI	GCNGC	5 cut(s)	168, 405, 468, 852, 884
BlsI	GCNGC	5 cut(s)	169, 406, 469, 853, 885
Bme1390I	CCNGG	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	647
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	2 cut(s)	392, 1122
BpiI	GAAGAC	1 cut(s)	26
BpuEI	CTTGAG	3 cut(s)	6, 245, 504
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	868
BsaXI	ACNNNNNCTCC	4 cut(s)	419, 449, 801, 831
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 576, 806, 810, 861
Bse118I	RCCGGY	1 cut(s)	868
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	205, 796
BseLI	CCNNNNNNNGG	5 cut(s)	65, 576, 806, 810, 861
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	162, 903
BseRI	GAGGAG	3 cut(s)	103, 106, 308
BseXI	GCAGC	3 cut(s)	179, 391, 863
Bsh1236I	CGCG	2 cut(s)	467, 638
BshFI	GGCC	3 cut(s)	75, 537, 883
BshTI	ACCGGT	1 cut(s)	868
BsiHKAI	GWGCWC	1 cut(s)	628
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	2 cut(s)	66, 869
BslFI	GGGAC	1 cut(s)	978
BslI	CCNNNNNNNGG	5 cut(s)	65, 576, 806, 810, 861
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	978
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	3 cut(s)	75, 537, 883
BsoBI	CYCGRG	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	4 cut(s)	141, 360, 645, 895
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	6 cut(s)	94, 304, 347, 467, 828, 884
BspANI	GGCC	3 cut(s)	75, 537, 883
BspCNI	CTCAG	2 cut(s)	163, 904
BspFNI	CGCG	2 cut(s)	467, 638
BspLI	GGNNCC	1 cut(s)	647
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	483
BspPI	GGATC	2 cut(s)	640, 653
BsrBI	CCGCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	868
BssAI	RCCGGY	1 cut(s)	868
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	4 cut(s)	141, 360, 645, 895
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	128, 723
Bst6I	CTCTTC	2 cut(s)	984, 1133
BstACI	GRCGYC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	3 cut(s)	171, 575, 912
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	205, 796
BstFNI	CGCG	2 cut(s)	467, 638
BstHHI	GCGC	2 cut(s)	65, 638
BstKTI	GATC	4 cut(s)	144, 363, 648, 898
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	4 cut(s)	141, 360, 645, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 164, 880, 900, 1073
BstNI	CCWGG	1 cut(s)	106
BstPI	GGTNACC	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	2 cut(s)	467, 638
BstV1I	GCAGC	3 cut(s)	179, 391, 863
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	645
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	858
BsuRI	GGCC	3 cut(s)	75, 537, 883
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	205, 796
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	1 cut(s)	823
BveI	ACCTGC	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	876
CfoI	GCGC	2 cut(s)	65, 638
Cfr10I	RCCGGY	1 cut(s)	868
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	377
CspAI	ACCGGT	1 cut(s)	868
CviAII	CATG	6 cut(s)	60, 265, 447, 665, 1111, 1120
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	3 cut(s)	171, 575, 912
DpnI	GATC	4 cut(s)	143, 362, 647, 897
DpnII	GATC	4 cut(s)	141, 360, 645, 895
EaeI	YGGCCR	1 cut(s)	881
Eam1104I	CTCTTC	2 cut(s)	984, 1133
EarI	CTCTTC	2 cut(s)	984, 1133
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	628
Eco53kI	GAGCTC	1 cut(s)	626
Eco57I	CTGAAG	2 cut(s)	442, 483
Eco88I	CYCGRG	1 cut(s)	621
Eco91I	GGTNACC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	6 cut(s)	63, 268, 450, 668, 1114, 1123
FaqI	GGGAC	1 cut(s)	978
FatI	CATG	6 cut(s)	59, 264, 446, 664, 1110, 1119
FauI	CCCGC	1 cut(s)	821
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	168, 405, 468, 852, 884
FokI	GGATG	2 cut(s)	192, 783
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	5 cut(s)	168, 405, 468, 852, 884
FspBI	CTAG	6 cut(s)	380, 633, 1047, 1068, 1077, 1147
GlaI	GCGC	2 cut(s)	64, 637
GluI	GCNGC	5 cut(s)	168, 405, 468, 852, 884
HaeIII	GGCC	3 cut(s)	75, 537, 883
HapII	CCGG	2 cut(s)	66, 869
HhaI	GCGC	2 cut(s)	65, 638
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	6 cut(s)	63, 268, 450, 668, 1114, 1123
Hin6I	GCGC	2 cut(s)	63, 636
HinP1I	GCGC	2 cut(s)	63, 636
HincII	GTYRAC	2 cut(s)	217, 526
HindII	GTYRAC	2 cut(s)	217, 526
HinfI	GANTC	7 cut(s)	17, 173, 481, 580, 820, 1040, 1124
HpaII	CCGG	2 cut(s)	66, 869
HphI	GGTGA	6 cut(s)	127, 336, 532, 715, 998, 1045
Hpy166II	GTNNAC	4 cut(s)	177, 217, 526, 907
Hpy188I	TCNGA	7 cut(s)	7, 81, 370, 502, 719, 1029, 1099
Hpy188III	TCNNGA	5 cut(s)	224, 621, 731, 791, 1047
Hpy8I	GTNNAC	4 cut(s)	177, 217, 526, 907
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	7 cut(s)	97, 670, 854, 919, 965, 1024, 1096
HpyCH4III	ACNGT	2 cut(s)	128, 723
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	2 cut(s)	167, 1135
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 164, 880, 900, 1073
HpyF3I	CTNAG	3 cut(s)	171, 575, 912
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	6 cut(s)	63, 268, 450, 668, 1114, 1123
HspAI	GCGC	2 cut(s)	63, 636
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	141, 360, 645, 895
LmnI	GCTCC	1 cut(s)	1012
Lsp1109I	GCAGC	3 cut(s)	179, 391, 863
LweI	GCATC	2 cut(s)	392, 1122
MaeI	CTAG	6 cut(s)	380, 633, 1047, 1068, 1077, 1147
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	4 cut(s)	143, 362, 647, 897
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	4 cut(s)	141, 360, 645, 895
MboII	GAAGA	7 cut(s)	26, 29, 355, 424, 448, 1001, 1035
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	2 cut(s)	753, 786
MlyI	GAGTC	3 cut(s)	182, 475, 1133
MmeI	TCCRAC	2 cut(s)	256, 697
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	2 cut(s)	11, 761
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	66, 869
MspR9I	CCNGG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	2 cut(s)	467, 638
MwoI	GCNNNNNNNGC	5 cut(s)	155, 164, 880, 900, 1073
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	141, 360, 645, 895
NlaIII	CATG	6 cut(s)	63, 268, 450, 668, 1114, 1123
NlaIV	GGNNCC	1 cut(s)	647
NmeAIII	GCCGAG	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	621
PceI	AGGCCT	1 cut(s)	537
PctI	GAATGC	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	4 cut(s)	17, 580, 820, 1040
PflMI	CCANNNNNTGG	1 cut(s)	806
PinAI	ACCGGT	1 cut(s)	868
PkrI	GCNGC	5 cut(s)	169, 406, 469, 853, 885
PleI	GAGTC	3 cut(s)	181, 475, 1132
PpsI	GAGTC	3 cut(s)	181, 475, 1132
Psp124BI	GAGCTC	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	104
PspEI	GGTNACC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	647
PspPI	GGNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	645
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	628
SaqAI	TTAA	2 cut(s)	11, 761
SatI	GCNGC	5 cut(s)	168, 405, 468, 852, 884
Sau3AI	GATC	4 cut(s)	141, 360, 645, 895
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	3 cut(s)	182, 475, 1133
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	392, 1122
SfcI	CTRYAG	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	621
SlaI	CTCGAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	4 cut(s)	21, 224, 519, 621
SmoI	CTYRAG	4 cut(s)	21, 224, 519, 621
Sse9I	AATT	2 cut(s)	753, 786
SseBI	AGGCCT	1 cut(s)	537
SsiI	CCGC	6 cut(s)	94, 304, 347, 467, 828, 884
SspMI	CTAG	6 cut(s)	380, 633, 1047, 1068, 1077, 1147
SstI	GAGCTC	1 cut(s)	628
StuI	AGGCCT	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	128, 723
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	622
TasI	AATT	2 cut(s)	753, 786
TauI	GCSGC	2 cut(s)	470, 886
TfiI	GAWTC	4 cut(s)	17, 580, 820, 1040
Tru1I	TTAA	2 cut(s)	11, 761
Tru9I	TTAA	2 cut(s)	11, 761
TscAI	CASTG	1 cut(s)	830
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	167, 404, 851
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	435, 668
TspGWI	ACGGA	1 cut(s)	1025
TspRI	CASTG	1 cut(s)	830
Van91I	CCANNNNNTGG	1 cut(s)	806
XapI	RAATTY	1 cut(s)	786
XbaI	TCTAGA	1 cut(s)	1046
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	621
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	6 cut(s)	380, 633, 1047, 1068, 1077, 1147
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.