Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8149328.1

Orthogroup ID

OG0009707

Physical Location & Seq

Genomic Coordinates Reverse (-)

187 .. 624

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8149328.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggtcggagagtcatttctggaaagaacaaagaacaagggaattgtattaaaagcttgggtaagccaacaggacattctggaacatccagccattggagggtttgtgaaccactgcgggtggaactcggttatggaagcagcccaagaagggataccggtgatggcgtggccgcaacacggcgatcaaagcgtgaacgctgagattgtggagaaggcagggttagggatatgggagagcaaatggggttggggacttgaagggttggtaagtggtgaagagatgggaaataagattgtggagctaatggaaaatcagaaggtgagggaattttctagaaatgttggggaaaaggctaggaaagctagtgggattgatggaaaatcagagaaggtggtcatggaaatcatggagtctttgatgcagaagaggaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

145

Amino Acids

16.12

Weight (kDa)

5.46

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47570 FvH4_6g47580
malus_domestica	MD17G1055700.v1.1
prunus_persica	Prupe.3G260000_v2.0.a1 Prupe.3G260100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166671 RchiOBHm_Chr2g0166701
rosa_laevigata	RLG00000021640
rosa_multiflora	Rmu_co8149328.1_g000001 Rmu_co8284467.1_g000001 Rmu_sc0002181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084310 Rroxscaffold_2G00084620
rosa_rugosa	Rorug02G0524900 Rorug02G0558700
rosa_samantha	Rh2AG591200 Rh2BG603000 Rh2CG574000 Rh2DG613800 Rh2DG613900
rosa_wichuraiana	Rw2G049240 Rw2G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AciI	CCGC	2 cut(s)	117, 173
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	329
AfiI	CCNNNNNNNGG	4 cut(s)	95, 99, 150, 179
AgeI	ACCGGT	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	3 cut(s)	56, 304, 365
AluI	AGCT	3 cut(s)	56, 304, 365
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	329
AsiGI	ACCGGT	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	172, 287, 334
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	3 cut(s)	157, 277, 371
BceAI	ACGGC	1 cut(s)	196
BciVI	GTATCC	1 cut(s)	147
BfaI	CTAG	4 cut(s)	336, 357, 366, 436
BfuI	GTATCC	1 cut(s)	147
BisI	GCNGC	2 cut(s)	141, 173
BlsI	GCNGC	2 cut(s)	142, 174
BmsI	GCATC	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 99, 150, 179
Bse118I	RCCGGY	1 cut(s)	157
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	4 cut(s)	95, 99, 150, 179
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	172
BshTI	ACCGGT	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	4 cut(s)	95, 99, 150, 179
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	117, 173
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	157
BssMI	GATC	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	273, 422
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 362
BstV1I	GCAGC	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	157
CspAI	ACCGGT	1 cut(s)	157
CviAII	CATG	2 cut(s)	400, 409
CviJI	RGCY	8 cut(s)	56, 66, 92, 143, 172, 304, 356, 365
CviKI_1	RGCY	8 cut(s)	56, 66, 92, 143, 172, 304, 356, 365
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	170
Eam1104I	CTCTTC	2 cut(s)	273, 422
EarI	CTCTTC	2 cut(s)	273, 422
FaeI	CATG	2 cut(s)	403, 412
FaiI	YATR	4 cut(s)	134, 232, 401, 410
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	399, 408
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	141, 173
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	141, 173
FspBI	CTAG	4 cut(s)	336, 357, 366, 436
GluI	GCNGC	2 cut(s)	141, 173
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	2 cut(s)	403, 412
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	2 cut(s)	11, 413
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	3 cut(s)	172, 287, 334
Hpy166II	GTNNAC	2 cut(s)	109, 196
Hpy188I	TCNGA	3 cut(s)	8, 318, 388
Hpy188III	TCNNGA	3 cut(s)	20, 80, 336
Hpy8I	GTNNAC	2 cut(s)	109, 196
HpyAV	CCTTC	5 cut(s)	143, 208, 254, 313, 385
HpyCH4V	TGCA	1 cut(s)	424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 362
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	403, 412
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	6 cut(s)	5, 56, 65, 102, 171, 204
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	4 cut(s)	336, 357, 366, 436
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	290
MluCI	AATT	2 cut(s)	42, 329
MlyI	GAGTC	2 cut(s)	20, 422
MnlI	CCTC	3 cut(s)	92, 318, 423
MseI	TTAA	1 cut(s)	50
MspI	CCGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	189, 362
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	403, 412
PflMI	CCANNNNNTGG	1 cut(s)	95
PinAI	ACCGGT	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	142, 174
PleI	GAGTC	2 cut(s)	19, 421
PpsI	GAGTC	2 cut(s)	19, 421
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	2 cut(s)	141, 173
Sau3AI	GATC	1 cut(s)	184
SchI	GAGTC	2 cut(s)	20, 422
SetI	ASST	5 cut(s)	58, 306, 324, 367, 396
SfaNI	GCATC	1 cut(s)	411
Sse9I	AATT	2 cut(s)	42, 329
SsiI	CCGC	2 cut(s)	117, 173
SspMI	CTAG	4 cut(s)	336, 357, 366, 436
TasI	AATT	2 cut(s)	42, 329
TauI	GCSGC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	119
TseI	GCWGC	1 cut(s)	140
TspRI	CASTG	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	329
XbaI	TCTAGA	1 cut(s)	335
XspI	CTAG	4 cut(s)	336, 357, 366, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.