Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009707

Physical Location & Seq

Genomic Coordinates Forward (+)

82382685 .. 82406686

Gene Structure 24002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG603000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGCCATCTGACCCCCTTCCTCCGCCTCGCTTCCACGCTCTCCTCCTCCCAAAACTGTCTGGTCACCTTGATCACAGCCTCCCCTGCTGTGTCTGCAGCAGAGTCGACCCACATTTCCTTGTTCCTTTCTCAACATCCAAAAGTCAACCATCTTGAGTTCCAACTCATTCCCTCCAATCCCACCACCACCACCATGGACGACCCTTTCTTTCTCCAATGGCAATCCACCAACCGCTCTCTCCATCTCCTCTACCCCTCACTCGCTTCCTCATCGCCGCCTCTCTCGGCGATCTTCTCTGACTTCGTAGTAGCATCAAGTATGGGAACAATCGCTGCCCAACTCAACATTCCCAACTACATCTTCTCCCCCACTTCATGTAAGTTCTTCAGTCTCATGGCTTACCTGCCGACTCTCTTATCAAACACTTCAGATATTAGTTCTCTCACTCAAGTCAACATACAAGGCCTCACCCCTTTGCCAATGACAAGCATTCCTCCCCCACTTAGGAATCAAAATCATATTTTCACATCACTAATACTTCAAAGCTCTCGAGCTCTTTCTAGCGCGAAAGGGATCCTAATGAACACCTTCCATGATTTTGAGTCAGACACTCTAGCTGCTATCAATGATGGCAGAGCTTTAACCAACATTAATCTCCCACCAATCCTCCCAATTGGGCCGTTACAAGCTTTTGAGCTCAAGAACGACCAAGACAAGTACTATCTTTCATGCCACTTGTTGATCGAGCCTTCGGAACCTCCTCAGTTGGTTCCACTGCCCCCAACCGGCCACGCCACCACTCCCGCCGGCTATTCCTCTGCATTTTCAGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

279

Amino Acids

30.15

Weight (kDa)

5.93

Isoelectric Point (pI)

61.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47570 FvH4_6g47580
malus_domestica	MD17G1055700.v1.1
prunus_persica	Prupe.3G260000_v2.0.a1 Prupe.3G260100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166671 RchiOBHm_Chr2g0166701
rosa_laevigata	RLG00000021640
rosa_multiflora	Rmu_co8149328.1_g000001 Rmu_co8284467.1_g000001 Rmu_sc0002181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084310 Rroxscaffold_2G00084620
rosa_rugosa	Rorug02G0524900 Rorug02G0558700
rosa_samantha	Rh2AG591200 Rh2BG603000 Rh2CG574000 Rh2DG613800 Rh2DG613900
rosa_wichuraiana	Rw2G049240 Rw2G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	414
AccBSI	CCGCTC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	107
AccII	CGCG	1 cut(s)	569
AciI	CCGC	4 cut(s)	25, 235, 278, 807
AclWI	GGATC	2 cut(s)	571, 584
AcoI	YGGCCR	1 cut(s)	790
AcuI	CTGAAG	2 cut(s)	373, 414
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	2 cut(s)	507, 788
AgsI	TTSAA	1 cut(s)	545
AjuI	GAANNNNNNNTTGG	4 cut(s)	333, 347, 365, 379
AluBI	AGCT	7 cut(s)	549, 557, 620, 641, 692, 700, 833
AluI	AGCT	7 cut(s)	549, 557, 620, 641, 692, 700, 833
Alw21I	GWGCWC	2 cut(s)	559, 702
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	571, 584
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	4 cut(s)	4, 466, 680, 790
ApeKI	GCWGC	4 cut(s)	98, 335, 620, 833
AseI	ATTAAT	1 cut(s)	654
Asp700I	GAANNNNTTC	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	2 cut(s)	4, 680
AsuHPI	GGTGA	2 cut(s)	58, 463
AvaI	CYCGRG	1 cut(s)	552
BamHI	GGATCC	1 cut(s)	576
BanII	GRGCYC	2 cut(s)	559, 702
Bbv12I	GWGCWC	2 cut(s)	559, 702
BbvI	GCAGC	4 cut(s)	110, 322, 607, 820
BccI	CCATC	4 cut(s)	15, 159, 252, 626
BceAI	ACGGC	1 cut(s)	667
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	564, 617
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	414
BisI	GCNGC	5 cut(s)	99, 278, 336, 621, 834
BlsI	GCNGC	5 cut(s)	100, 279, 337, 622, 835
BmcAI	AGTACT	1 cut(s)	722
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	2 cut(s)	4, 680
BmiI	GGNNCC	3 cut(s)	578, 759, 774
BmsI	GCATC	1 cut(s)	323
BpuEI	CTTGAG	3 cut(s)	176, 435, 686
BsaJI	CCNNGG	1 cut(s)	195
BsaXI	ACNNNNNCTCC	4 cut(s)	350, 380, 654, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 788
Bse118I	RCCGGY	2 cut(s)	788, 809
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	507, 788
BseMII	CTCAG	1 cut(s)	779
BseRI	GAGGAG	4 cut(s)	34, 37, 239, 753
BseXI	GCAGC	4 cut(s)	110, 322, 607, 820
Bsh1236I	CGCG	1 cut(s)	569
BshFI	GGCC	4 cut(s)	6, 468, 682, 792
BsiHKAI	GWGCWC	2 cut(s)	559, 702
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	2 cut(s)	789, 810
BslI	CCNNNNNNNGG	2 cut(s)	507, 788
BsmAI	GTCTC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	4 cut(s)	6, 468, 682, 792
BsoBI	CYCGRG	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	559, 702
Bsp143I	GATC	4 cut(s)	72, 291, 576, 744
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	4 cut(s)	25, 235, 278, 807
BspANI	GGCC	4 cut(s)	6, 468, 682, 792
BspCNI	CTCAG	1 cut(s)	778
BspFNI	CGCG	1 cut(s)	569
BspLI	GGNNCC	3 cut(s)	578, 759, 774
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	571, 584
BsrBI	CCGCTC	1 cut(s)	237
BsrFI	RCCGGY	2 cut(s)	788, 809
BssAI	RCCGGY	2 cut(s)	788, 809
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	4 cut(s)	72, 291, 576, 744
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	811
BstDEI	CTNAG	2 cut(s)	506, 765
BstDSI	CCRYGG	1 cut(s)	195
BstEII	GGTNACC	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	4 cut(s)	75, 294, 579, 747
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	72, 291, 576, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 830
BstPI	GGTNACC	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	569
BstV1I	GCAGC	4 cut(s)	110, 322, 607, 820
BstX2I	RGATCY	1 cut(s)	576
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	576
BsuRI	GGCC	4 cut(s)	6, 468, 682, 792
BtgI	CCRYGG	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	776
BtsIMutI	CAGTG	1 cut(s)	776
BveI	ACCTGC	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	811
CfoI	GCGC	1 cut(s)	569
Cfr10I	RCCGGY	2 cut(s)	788, 809
Cfr13I	GGNCC	2 cut(s)	4, 680
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	6 cut(s)	196, 378, 397, 596, 732, 837
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	2 cut(s)	506, 765
DpnI	GATC	4 cut(s)	74, 293, 578, 746
DpnII	GATC	4 cut(s)	72, 291, 576, 744
EaeI	YGGCCR	1 cut(s)	790
EciI	GGCGGA	1 cut(s)	14
Ecl136II	GAGCTC	2 cut(s)	557, 700
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	468
Eco24I	GRGCYC	2 cut(s)	559, 702
Eco53kI	GAGCTC	2 cut(s)	557, 700
Eco57I	CTGAAG	2 cut(s)	373, 414
Eco88I	CYCGRG	1 cut(s)	552
Eco91I	GGTNACC	1 cut(s)	64
EcoICRI	GAGCTC	2 cut(s)	557, 700
EcoO65I	GGTNACC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	2 cut(s)	559, 702
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	6 cut(s)	199, 381, 400, 599, 735, 840
FaiI	YATR	9 cut(s)	197, 323, 379, 398, 461, 522, 597, 733, 838
FatI	CATG	6 cut(s)	195, 377, 396, 595, 731, 836
FauI	CCCGC	1 cut(s)	814
FbaI	TGATCA	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	5 cut(s)	99, 278, 336, 621, 834
FokI	GGATG	1 cut(s)	123
FriOI	GRGCYC	2 cut(s)	559, 702
Fsp4HI	GCNGC	5 cut(s)	99, 278, 336, 621, 834
FspBI	CTAG	2 cut(s)	564, 617
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	5 cut(s)	99, 278, 336, 621, 834
HaeIII	GGCC	4 cut(s)	6, 468, 682, 792
HapII	CCGG	2 cut(s)	789, 810
HhaI	GCGC	1 cut(s)	569
Hin1II	CATG	6 cut(s)	199, 381, 400, 599, 735, 840
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HincII	GTYRAC	3 cut(s)	108, 148, 457
HindII	GTYRAC	3 cut(s)	108, 148, 457
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	4 cut(s)	104, 412, 511, 605
HpaII	CCGG	2 cut(s)	789, 810
HphI	GGTGA	2 cut(s)	58, 463
Hpy166II	GTNNAC	3 cut(s)	108, 148, 457
Hpy188I	TCNGA	5 cut(s)	12, 301, 433, 610, 757
Hpy188III	TCNNGA	3 cut(s)	155, 552, 703
Hpy8I	GTNNAC	3 cut(s)	108, 148, 457
HpyAV	CCTTC	3 cut(s)	28, 601, 762
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	98, 824, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 830
HpyF3I	CTNAG	2 cut(s)	506, 765
Hsp92II	CATG	6 cut(s)	199, 381, 400, 599, 735, 840
HspAI	GCGC	1 cut(s)	567
KroI	GCCGGC	1 cut(s)	809
KroNI	GCCGGC	1 cut(s)	811
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	4 cut(s)	72, 291, 576, 744
LpnPI	CCDG	5 cut(s)	47, 99, 419, 802, 823
Lsp1109I	GCAGC	4 cut(s)	110, 322, 607, 820
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	2 cut(s)	564, 617
MaeIII	GTNAC	2 cut(s)	64, 684
MalI	GATC	4 cut(s)	74, 293, 578, 746
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	4 cut(s)	72, 291, 576, 744
MboII	GAAGA	3 cut(s)	286, 355, 379
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	1 cut(s)	576
MhlI	GDGCHC	2 cut(s)	559, 702
MluCI	AATT	1 cut(s)	675
MlyI	GAGTC	3 cut(s)	113, 406, 614
MmeI	TCCRAC	1 cut(s)	187
MroNI	GCCGGC	1 cut(s)	809
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	2 cut(s)	644, 654
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	2 cut(s)	789, 810
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	492
MvnI	CGCG	1 cut(s)	569
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 830
NaeI	GCCGGC	1 cut(s)	811
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	4 cut(s)	72, 291, 576, 744
NgoMIV	GCCGGC	1 cut(s)	809
NlaIII	CATG	6 cut(s)	199, 381, 400, 599, 735, 840
NlaIV	GGNNCC	3 cut(s)	578, 759, 774
NmeAIII	GCCGAG	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	552
PceI	AGGCCT	1 cut(s)	468
PctI	GAATGC	1 cut(s)	492
PdiI	GCCGGC	1 cut(s)	811
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	5 cut(s)	100, 279, 337, 622, 835
PleI	GAGTC	3 cut(s)	112, 406, 613
PpsI	GAGTC	3 cut(s)	112, 406, 613
PshBI	ATTAAT	1 cut(s)	654
Psp124BI	GAGCTC	2 cut(s)	559, 702
PspEI	GGTNACC	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	578, 759, 774
PspPI	GGNCC	2 cut(s)	4, 680
PstI	CTGCAG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	576
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	2 cut(s)	559, 702
SalI	GTCGAC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	644, 654
SatI	GCNGC	5 cut(s)	99, 278, 336, 621, 834
Sau3AI	GATC	4 cut(s)	72, 291, 576, 744
Sau96I	GGNCC	2 cut(s)	4, 680
ScaI	AGTACT	1 cut(s)	722
SchI	GAGTC	3 cut(s)	113, 406, 614
SduI	GDGCHC	2 cut(s)	559, 702
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	552
SlaI	CTCGAG	1 cut(s)	552
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	4 cut(s)	155, 450, 552, 701
SmoI	CTYRAG	4 cut(s)	155, 450, 552, 701
Sse9I	AATT	1 cut(s)	675
SseBI	AGGCCT	1 cut(s)	468
SsiI	CCGC	4 cut(s)	25, 235, 278, 807
SspMI	CTAG	2 cut(s)	564, 617
SstI	GAGCTC	2 cut(s)	559, 702
StuI	AGGCCT	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	107, 553, 747
TasI	AATT	1 cut(s)	675
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	2 cut(s)	644, 654
Tru9I	TTAA	2 cut(s)	644, 654
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	4 cut(s)	98, 335, 620, 833
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	366, 599, 720
TspRI	CASTG	1 cut(s)	783
VspI	ATTAAT	1 cut(s)	654
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	552
XmiI	GTMKAC	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	2 cut(s)	564, 617
ZrmI	AGTACT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.