Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009707

Physical Location & Seq

Genomic Coordinates Reverse (-)

6805144 .. 6806558

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTCAGACTCAACAGATTCTCAAGCACTTCCTCTTCTTCCTCACATAGCTCTATTCCCATGCGCCGGAATGGGCCATCTGACCCCCTTCCTCCGCCTCGCTTCCACGCTCTCCTCCTCCCAAAACTGTCTGGTCACCTTGATCACAGCCTCCCCTGCTGTGTCTGCAGCAGAGTCCACCCACATTTCCTTGTTCCTTTTTCAACATCCAAAAGTCAACCATCTTGAGTTCCAACTCATTCCCTCCAATCCCACCACCACCACCATGGACGACCCTTTCTTTCTCCAATGGCAATCCACCAACCGCTCTCTCCATCTCCTCTACCCCTCACTCGCTTCCTCATCGCCGCCTCTCTCGGCGATCTTCTCTGACTTCGTAGTAGCATCAAGTATGGGAACAATCGCTGCCCAACTCAACATTCCCAACTACATCTTCTCCCCCACTTCATACACTCTAGCTGCTATCAATGACGGCAGAGCTTTAACCAACATTAATCTCCCACCAATCCTCCCAATTGGGCCGTTACAAGCTTTTGAGCTCAAGAACGACCAAGACAAGTACTATCTTTCATGGTTAGACAACCAACCAAAACAGTCTGTAGTTTATGTGAGTTTTGGAAGCAGAACAGCTATGTCAAATTCACAGATAAGAGAGCTCTCAAAGGGGTTGGAGACAAGTGGATATAGGTTTTTGTGGGTACTCAAGACCAGTAAAGTTGATAAAGATGATATACAAGAGGTGAAAGATATTGTCGGAGAGTCATTTCTGGAAAGAACAAAGAACAAGGGAATTGTATTAAAAGCGTGGGTAAGCCAACAGGACATTCTGGAACATCCAGCCATTGGAGGGTTTGTGAATCACTGCGGGTGGAACTCGGTTATGGAAGCAGCCCAAGAAGGGATACCGGTGCTGGCGTGGCCGCAACACGGCGATCAAAGAGTGAACGCTGAGATTGTGGAGAAGGCAGGGTTAGGGATATGGGAGAGCAAATGGGGTTGGGGACTTGCAGGGTTGGTAAGTGGTGAAGAGATAGGAAATAAGATTGTGGAGCTAATGGAAAATCAGAAGGTGAGGGGATTTTCTAGAAATGTTGGGGAAAAGGCTAGGAAAGCTAGTGGGATTGATGGAAAATCAGAGAATGTAGTCATGGAACTCATGGAGTCTTTGATGCAGAAGAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

394

Amino Acids

43.37

Weight (kDa)

5.88

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	193 - 324	7.2e-20	UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C	PF06722	263 - 330	7.4e-06	Erythromycin biosynthesis protein CIII-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47570 FvH4_6g47580
malus_domestica	MD17G1055700.v1.1
prunus_persica	Prupe.3G260000_v2.0.a1 Prupe.3G260100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166671 RchiOBHm_Chr2g0166701
rosa_laevigata	RLG00000021640
rosa_multiflora	Rmu_co8149328.1_g000001 Rmu_co8284467.1_g000001 Rmu_sc0002181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084310 Rroxscaffold_2G00084620
rosa_rugosa	Rorug02G0524900 Rorug02G0558700
rosa_samantha	Rh2AG591200 Rh2BG603000 Rh2CG574000 Rh2DG613800 Rh2DG613900
rosa_wichuraiana	Rw2G049240 Rw2G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	842
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	5 cut(s)	94, 304, 347, 864, 920
AcoI	YGGCCR	1 cut(s)	917
AcsI	RAATTY	1 cut(s)	637
AfaI	GTAC	2 cut(s)	560, 699
AfiI	CCNNNNNNNGG	5 cut(s)	65, 842, 846, 897, 926
AgeI	ACCGGT	1 cut(s)	904
AgsI	TTSAA	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	6 cut(s)	402, 416, 434, 448, 807, 839
AluBI	AGCT	9 cut(s)	50, 458, 479, 530, 538, 629, 655, 1051, 1112
AluI	AGCT	9 cut(s)	50, 458, 479, 530, 538, 629, 655, 1051, 1112
Alw21I	GWGCWC	2 cut(s)	540, 657
Alw26I	GTCTC	1 cut(s)	665
AoxI	GGCC	3 cut(s)	73, 518, 917
ApeKI	GCWGC	4 cut(s)	167, 404, 458, 887
ApoI	RAATTY	1 cut(s)	637
AseI	ATTAAT	1 cut(s)	492
AsiGI	ACCGGT	1 cut(s)	904
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	73, 518
AsuHPI	GGTGA	4 cut(s)	127, 751, 1034, 1081
BanII	GRGCYC	2 cut(s)	540, 657
Bbv12I	GWGCWC	2 cut(s)	540, 657
BbvI	GCAGC	4 cut(s)	179, 391, 445, 899
BccI	CCATC	4 cut(s)	84, 228, 321, 1118
BceAI	ACGGC	3 cut(s)	487, 505, 943
BciVI	GTATCC	1 cut(s)	894
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	5 cut(s)	455, 1083, 1104, 1113, 1183
BfmI	CTRYAG	2 cut(s)	165, 597
BfuI	GTATCC	1 cut(s)	894
BisI	GCNGC	6 cut(s)	168, 347, 405, 459, 888, 920
BlsI	GCNGC	6 cut(s)	169, 348, 406, 460, 889, 921
BmcAI	AGTACT	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	73, 518
BmsI	GCATC	2 cut(s)	392, 1158
BpuEI	CTTGAG	4 cut(s)	6, 245, 524, 686
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	904
BsaXI	ACNNNNNCTCC	6 cut(s)	419, 449, 492, 522, 837, 867
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 842, 846, 897, 926
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	1 cut(s)	708
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	205, 832
BseLI	CCNNNNNNNGG	5 cut(s)	65, 842, 846, 897, 926
BseMII	CTCAG	1 cut(s)	939
BseNI	ACTGG	1 cut(s)	708
BseRI	GAGGAG	3 cut(s)	103, 106, 308
BseXI	GCAGC	4 cut(s)	179, 391, 445, 899
BshFI	GGCC	3 cut(s)	75, 520, 919
BshTI	ACCGGT	1 cut(s)	904
BsiHKAI	GWGCWC	2 cut(s)	540, 657
BsiSI	CCGG	2 cut(s)	66, 905
BslFI	GGGAC	1 cut(s)	1014
BslI	CCNNNNNNNGG	5 cut(s)	65, 842, 846, 897, 926
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	1014
BsnI	GGCC	3 cut(s)	75, 520, 919
Bsp1286I	GDGCHC	2 cut(s)	540, 657
Bsp143I	GATC	3 cut(s)	141, 360, 931
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	5 cut(s)	94, 304, 347, 864, 920
BspANI	GGCC	3 cut(s)	75, 520, 919
BspCNI	CTCAG	1 cut(s)	940
BspMAI	CTGCAG	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	904
BsrI	ACTGG	1 cut(s)	708
BssAI	RCCGGY	1 cut(s)	904
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	141, 360, 931
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	128, 594
Bst6I	CTCTTC	3 cut(s)	39, 1020, 1169
BstC8I	GCNNGC	1 cut(s)	912
BstDEI	CTNAG	1 cut(s)	948
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	205, 832
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	3 cut(s)	144, 363, 934
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	3 cut(s)	141, 360, 931
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 164, 916, 1109
BstPI	GGTNACC	1 cut(s)	133
BstSFI	CTRYAG	2 cut(s)	165, 597
BstV1I	GCAGC	4 cut(s)	179, 391, 445, 899
BstXI	CCANNNNNNTGG	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	894
BsuRI	GGCC	3 cut(s)	75, 520, 919
BtgI	CCRYGG	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	205, 832
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	1 cut(s)	859
Cac8I	GCNNGC	1 cut(s)	912
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	2 cut(s)	73, 518
Csp6I	GTAC	2 cut(s)	559, 698
CspAI	ACCGGT	1 cut(s)	904
CviAII	CATG	5 cut(s)	60, 265, 570, 1147, 1156
CviQI	GTAC	2 cut(s)	559, 698
DdeI	CTNAG	1 cut(s)	948
DpnI	GATC	3 cut(s)	143, 362, 933
DpnII	GATC	3 cut(s)	141, 360, 931
EaeI	YGGCCR	1 cut(s)	917
Eam1104I	CTCTTC	3 cut(s)	39, 1020, 1169
EarI	CTCTTC	3 cut(s)	39, 1020, 1169
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	2 cut(s)	538, 655
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	2 cut(s)	540, 657
Eco53kI	GAGCTC	2 cut(s)	538, 655
Eco91I	GGTNACC	1 cut(s)	133
EcoICRI	GAGCTC	2 cut(s)	538, 655
EcoO65I	GGTNACC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	2 cut(s)	540, 657
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	5 cut(s)	63, 268, 573, 1150, 1159
FaqI	GGGAC	1 cut(s)	1014
FatI	CATG	5 cut(s)	59, 264, 569, 1146, 1155
FauI	CCCGC	1 cut(s)	857
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	6 cut(s)	168, 347, 405, 459, 888, 920
FokI	GGATG	2 cut(s)	192, 819
FriOI	GRGCYC	2 cut(s)	540, 657
Fsp4HI	GCNGC	6 cut(s)	168, 347, 405, 459, 888, 920
FspBI	CTAG	5 cut(s)	455, 1083, 1104, 1113, 1183
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	6 cut(s)	168, 347, 405, 459, 888, 920
HaeIII	GGCC	3 cut(s)	75, 520, 919
HapII	CCGG	2 cut(s)	66, 905
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	5 cut(s)	63, 268, 573, 1150, 1159
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	6 cut(s)	8, 17, 173, 758, 856, 1160
HpaII	CCGG	2 cut(s)	66, 905
HphI	GGTGA	4 cut(s)	127, 751, 1034, 1081
Hpy166II	GTNNAC	3 cut(s)	177, 217, 943
Hpy188I	TCNGA	6 cut(s)	7, 81, 370, 755, 1065, 1135
Hpy188III	TCNNGA	6 cut(s)	224, 541, 703, 767, 827, 1083
Hpy8I	GTNNAC	3 cut(s)	177, 217, 943
HpyAV	CCTTC	4 cut(s)	97, 890, 955, 1060
HpyCH4III	ACNGT	2 cut(s)	128, 594
HpyCH4V	TGCA	3 cut(s)	167, 1007, 1171
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 164, 916, 1109
HpyF3I	CTNAG	1 cut(s)	948
Hsp92II	CATG	5 cut(s)	63, 268, 573, 1150, 1159
HspAI	GCGC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	141, 360, 931
LmnI	GCTCC	1 cut(s)	1048
Lsp1109I	GCAGC	4 cut(s)	179, 391, 445, 899
LweI	GCATC	2 cut(s)	392, 1158
MaeI	CTAG	5 cut(s)	455, 1083, 1104, 1113, 1183
MaeIII	GTNAC	2 cut(s)	133, 522
MalI	GATC	3 cut(s)	143, 362, 933
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	3 cut(s)	141, 360, 931
MboII	GAAGA	5 cut(s)	26, 29, 355, 424, 1037
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	540, 657
MluCI	AATT	3 cut(s)	513, 637, 789
MlyI	GAGTC	4 cut(s)	2, 182, 767, 1169
MmeI	TCCRAC	3 cut(s)	256, 648, 733
MseI	TTAA	3 cut(s)	482, 492, 797
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	2 cut(s)	66, 905
MunI	CAATTG	1 cut(s)	513
MwoI	GCNNNNNNNGC	4 cut(s)	155, 164, 916, 1109
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	141, 360, 931
NlaIII	CATG	5 cut(s)	63, 268, 573, 1150, 1159
NmeAIII	GCCGAG	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	17, 856
PflMI	CCANNNNNTGG	1 cut(s)	842
PinAI	ACCGGT	1 cut(s)	904
PkrI	GCNGC	6 cut(s)	169, 348, 406, 460, 889, 921
PleI	GAGTC	4 cut(s)	2, 181, 766, 1168
PpsI	GAGTC	4 cut(s)	2, 181, 766, 1168
PshBI	ATTAAT	1 cut(s)	492
Psp124BI	GAGCTC	2 cut(s)	540, 657
PspEI	GGTNACC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	73, 518
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	560, 699
RsaNI	GTAC	2 cut(s)	559, 698
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	2 cut(s)	540, 657
SaqAI	TTAA	3 cut(s)	482, 492, 797
SatI	GCNGC	6 cut(s)	168, 347, 405, 459, 888, 920
Sau3AI	GATC	3 cut(s)	141, 360, 931
Sau96I	GGNCC	2 cut(s)	73, 518
ScaI	AGTACT	1 cut(s)	560
SchI	GAGTC	4 cut(s)	2, 182, 767, 1169
SduI	GDGCHC	2 cut(s)	540, 657
SfaNI	GCATC	2 cut(s)	392, 1158
SfcI	CTRYAG	2 cut(s)	165, 597
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	4 cut(s)	21, 224, 539, 701
SmoI	CTYRAG	4 cut(s)	21, 224, 539, 701
Sse9I	AATT	3 cut(s)	513, 637, 789
SsiI	CCGC	5 cut(s)	94, 304, 347, 864, 920
SspMI	CTAG	5 cut(s)	455, 1083, 1104, 1113, 1183
SstI	GAGCTC	2 cut(s)	540, 657
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	128, 594
TasI	AATT	3 cut(s)	513, 637, 789
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	2 cut(s)	349, 922
TfiI	GAWTC	2 cut(s)	17, 856
Tru1I	TTAA	3 cut(s)	482, 492, 797
Tru9I	TTAA	3 cut(s)	482, 492, 797
TscAI	CASTG	1 cut(s)	866
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	4 cut(s)	167, 404, 458, 887
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	435, 558
TspRI	CASTG	1 cut(s)	866
Van91I	CCANNNNNTGG	1 cut(s)	842
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	637
XbaI	TCTAGA	1 cut(s)	1082
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XspI	CTAG	5 cut(s)	455, 1083, 1104, 1113, 1183
ZrmI	AGTACT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.