Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009707

Physical Location & Seq

Genomic Coordinates Forward (+)

84561912 .. 84567197

Gene Structure 5286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG613900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAAGCAGCCCAAGAAGGGATACCGGTGCTGGCGTGGCCGCAACACGGCGATCAAAGCGTGAACGCTGAGATTGTGGAGAAGGCAGGGTTAGGGATATGGGAGAGCAAATGGGGTTGGGGACTTGAAGGGTTGGTAAGTGGTGAAGAGATAGGAAATAAGATTGTGGAGCTAATGGAAAATCAGAAGGTGAGGGGATTTTCTAGAAATGTTGGGGAAAAGGCTAGGAAAGCTAGTGGGATTGATGGAAAATCAGAGAAGAATAAACTTCTCCAACTCTCTGTCCACATAGATCCCATCGCTGAGTGTGGTTATGCGCGGCCACTTGTTGATCGACCCTTCGGAACCTCCTCAGTTGGTTCCACTGCCCCAACCGCCCACGCCACCACTCCTGCCGGCTATTCCTCTGCATTTTCAACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

141

Amino Acids

14.96

Weight (kDa)

5.62

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47570 FvH4_6g47580
malus_domestica	MD17G1055700.v1.1
prunus_persica	Prupe.3G260000_v2.0.a1 Prupe.3G260100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166671 RchiOBHm_Chr2g0166701
rosa_laevigata	RLG00000021640
rosa_multiflora	Rmu_co8149328.1_g000001 Rmu_co8284467.1_g000001 Rmu_sc0002181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084310 Rroxscaffold_2G00084620
rosa_rugosa	Rorug02G0524900 Rorug02G0558700
rosa_samantha	Rh2AG591200 Rh2BG603000 Rh2CG574000 Rh2DG613800 Rh2DG613900
rosa_wichuraiana	Rw2G049240 Rw2G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	319
AciI	CCGC	3 cut(s)	41, 319, 375
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	2 cut(s)	38, 320
AfiI	CCNNNNNNNGG	2 cut(s)	18, 47
AgeI	ACCGGT	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	128, 417
AluBI	AGCT	2 cut(s)	172, 233
AluI	AGCT	2 cut(s)	172, 233
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	2 cut(s)	38, 320
ApeKI	GCWGC	1 cut(s)	8
AsiGI	ACCGGT	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	155, 202
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	2 cut(s)	239, 305
BceAI	ACGGC	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	15
BfaI	CTAG	3 cut(s)	204, 225, 234
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	3 cut(s)	9, 41, 320
BlsI	GCNGC	3 cut(s)	10, 42, 321
BmiI	GGNNCC	2 cut(s)	346, 361
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 47
Bse118I	RCCGGY	2 cut(s)	25, 395
BseLI	CCNNNNNNNGG	2 cut(s)	18, 47
BseMII	CTCAG	3 cut(s)	60, 294, 366
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	40, 322
BshTI	ACCGGT	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	26, 396
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	18, 47
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	40, 322
Bsp143I	GATC	3 cut(s)	52, 292, 331
BspACI	CCGC	3 cut(s)	41, 319, 375
BspANI	GGCC	2 cut(s)	40, 322
BspCNI	CTCAG	3 cut(s)	61, 295, 365
BspFNI	CGCG	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	346, 361
BspPI	GGATC	1 cut(s)	287
BsrFI	RCCGGY	2 cut(s)	25, 395
BssAI	RCCGGY	2 cut(s)	25, 395
BssMI	GATC	3 cut(s)	52, 292, 331
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	33, 397
BstDEI	CTNAG	3 cut(s)	69, 303, 352
BstFNI	CGCG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	3 cut(s)	55, 295, 334
BstMBI	GATC	3 cut(s)	52, 292, 331
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 57, 230, 374
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	40, 322
BtgZI	GCGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	33, 397
CfoI	GCGC	1 cut(s)	319
Cfr10I	RCCGGY	2 cut(s)	25, 395
CspAI	ACCGGT	1 cut(s)	25
CviAII	CATG	1 cut(s)	423
CviJI	RGCY	7 cut(s)	11, 40, 172, 224, 233, 322, 399
CviKI_1	RGCY	7 cut(s)	11, 40, 172, 224, 233, 322, 399
DdeI	CTNAG	3 cut(s)	69, 303, 352
DpnI	GATC	3 cut(s)	54, 294, 333
DpnII	GATC	3 cut(s)	52, 292, 331
EaeI	YGGCCR	2 cut(s)	38, 320
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
FaeI	CATG	1 cut(s)	426
FaiI	YATR	4 cut(s)	100, 290, 315, 424
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	422
Fnu4HI	GCNGC	3 cut(s)	9, 41, 320
Fsp4HI	GCNGC	3 cut(s)	9, 41, 320
FspBI	CTAG	3 cut(s)	204, 225, 234
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	3 cut(s)	9, 41, 320
HaeIII	GGCC	2 cut(s)	40, 322
HapII	CCGG	2 cut(s)	26, 396
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	26, 396
HphI	GGTGA	2 cut(s)	155, 202
Hpy166II	GTNNAC	2 cut(s)	64, 286
Hpy188I	TCNGA	3 cut(s)	186, 256, 344
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	2 cut(s)	64, 286
HpyAV	CCTTC	5 cut(s)	11, 76, 122, 181, 349
HpyCH4V	TGCA	2 cut(s)	410, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 57, 230, 374
HpyF3I	CTNAG	3 cut(s)	69, 303, 352
Hsp92II	CATG	1 cut(s)	426
HspAI	GCGC	1 cut(s)	317
KroI	GCCGGC	1 cut(s)	395
KroNI	GCCGGC	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	52, 292, 331
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	17, 39, 72, 405, 409
Lsp1109I	GCAGC	1 cut(s)	20
MaeI	CTAG	3 cut(s)	204, 225, 234
MalI	GATC	3 cut(s)	54, 294, 333
MboI	GATC	3 cut(s)	52, 292, 331
MboII	GAAGA	2 cut(s)	158, 271
MflI	RGATCY	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	4 cut(s)	186, 358, 361, 415
MroNI	GCCGGC	1 cut(s)	395
MspI	CCGG	2 cut(s)	26, 396
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	4 cut(s)	37, 57, 230, 374
NaeI	GCCGGC	1 cut(s)	397
NdeII	GATC	3 cut(s)	52, 292, 331
NgoMIV	GCCGGC	1 cut(s)	395
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	2 cut(s)	346, 361
PdiI	GCCGGC	1 cut(s)	397
PinAI	ACCGGT	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	10, 42, 321
PspN4I	GGNNCC	2 cut(s)	346, 361
PsuI	RGATCY	1 cut(s)	292
SatI	GCNGC	3 cut(s)	9, 41, 320
Sau3AI	GATC	3 cut(s)	52, 292, 331
SetI	ASST	4 cut(s)	174, 192, 235, 350
SsiI	CCGC	3 cut(s)	41, 319, 375
SspMI	CTAG	3 cut(s)	204, 225, 234
TaqI	TCGA	1 cut(s)	334
TauI	GCSGC	2 cut(s)	43, 322
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	1 cut(s)	8
TspRI	CASTG	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	203
XspI	CTAG	3 cut(s)	204, 225, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.