Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006947

Physical Location & Seq

Genomic Coordinates Reverse (-)

36433221 .. 36435391

Gene Structure 2171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48400.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTTTTCTCTTGCTCTGTCCGATACAAACTCAGAAAAGGTCTCCCTTCGTCGCCCCGCCATTCTCATGCAAATCGCTGTCTTGCCAATCGGAAAGTTCATGGCCAAAACTCTGCCAAACAAGGACTTCAATTTGTTGGGCTTTAAGTTCAACTTGAACCCCGGTCCCTTCAACATGAAGGAGCATGTCGTCATCACCATCTTCGCCAATTGTGGGGTCTCCTCTGGCGGAGGACTCTTCTGGCTCTTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009506 GO:0009987 GO:0010232 GO:0010233 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030054 GO:0032501 GO:0034220 GO:0042592 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0098655 GO:0098771 GO:1990388

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

85

Amino Acids

9.28

Weight (kDa)

9.74

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	20 - 80	1e-10	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400
malus_domestica	MD10G1056600.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1
pyrus_communis	pycom10g04350
rosa_chinensis	RchiOBHm_Chr1g0381911 RchiOBHm_Chr2g0161591
rosa_laevigata	RLG00000004821
rosa_multiflora	Rmu_co7963376.1_g000001 Rmu_co8294873.1_g000001 Rmu_co8426875.1_g000001 Rmu_co8431857.1_g000001 Rmu_sc0001742.1_g000002 Rmu_sc0002400.1_g000001 Rmu_sc0008051.1_g000001
rosa_samantha	Rh1BG412500 Rh1CG427300 Rh1DG444800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 228
AcoI	YGGCCR	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgsI	TTSAA	4 cut(s)	130, 151, 157, 172
Alw26I	GTCTC	2 cut(s)	46, 223
AoxI	GGCC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	104
BccI	CCATC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	46, 223
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	162
BsaI	GGTCTC	2 cut(s)	46, 223
BsaJI	CCNNGG	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	2 cut(s)	46, 223
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	104
Bso31I	GGTCTC	2 cut(s)	46, 223
BspACI	CCGC	2 cut(s)	57, 228
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	251
BspTNI	GGTCTC	2 cut(s)	46, 223
BssECI	CCNNGG	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	242, 251
BstDEI	CTNAG	1 cut(s)	31
BstMAI	GTCTC	2 cut(s)	46, 223
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	164
CviAII	CATG	4 cut(s)	67, 100, 175, 185
CviJI	RGCY	3 cut(s)	104, 141, 244
CviKI_1	RGCY	3 cut(s)	104, 141, 244
DdeI	CTNAG	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	242, 251
EarI	CTCTTC	2 cut(s)	242, 251
EciI	GGCGGA	1 cut(s)	243
Eco31I	GGTCTC	2 cut(s)	46, 223
Eco47I	GGWCC	1 cut(s)	164
FaeI	CATG	4 cut(s)	70, 103, 178, 188
FaiI	YATR	4 cut(s)	68, 101, 176, 186
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	4 cut(s)	66, 99, 174, 184
FauI	CCCGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	4 cut(s)	70, 103, 178, 188
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	22, 34, 92, 254
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	3 cut(s)	56, 172, 178
HpyCH4V	TGCA	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	31
Hsp92II	CATG	4 cut(s)	70, 103, 178, 188
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	3 cut(s)	175, 210, 226
MboII	GAAGA	3 cut(s)	193, 229, 238
MfeI	CAATTG	1 cut(s)	208
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	2 cut(s)	130, 208
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	224, 232
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	208
NciI	CCSGG	1 cut(s)	162
NlaIII	CATG	4 cut(s)	70, 103, 178, 188
NlaIV	GGNNCC	1 cut(s)	166
NspI	RCATGY	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	1 cut(s)	42
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	130, 208
SsiI	CCGC	2 cut(s)	57, 228
StyD4I	CCNGG	1 cut(s)	160
TasI	AATT	2 cut(s)	130, 208
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TspDTI	ATGAA	3 cut(s)	88, 191, 238
VpaK11BI	GGWCC	1 cut(s)	164
XceI	RCATGY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.