Rh1DG444800

OPT oligopeptide transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006947
Physical Location & Seq
Forward (+)
65277045 .. 65277950
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG444800.1

Sequence Viewer

Length: 717 bp
ATGGAGATAGATAATAGTAGTGCTGTAAAGATGGAGCAGGTCCAGCTCCAGCAGGAAGATGAGCGCTCTTCCATTGAGCAAGTGGAGTTGACAGTGCCGAAAACCGATGACCCCACGTTGCCGGTGCTCACATTCCGAACGTGGGTTCTGGGTTTGGTCTCATGTGTCCTTCTCTCCTTTGTGAACCAGTTTTTCTGGTACAGGACTCAGCCGTTTACTGTGACATCCATGAGTGCACAGATTGCTGTCGTGCCAATCGAACATTTCATGGCGAGAGTGCTGCCCACGCGCCGTTTTTTCCAAGATACTCGGTTTGAGTTCACCATGAATCCGGGGCCCTTTAATGTCAAGGAACATGTTTTGATCACCATATTTGCAAATTGCGGGGGTGGAACTGTTTATGCTACTCATATCTTGACTGCTGTTAAGATCTACTACAAGAGGAAGCTCACTTTTCTTGCTGCCTTTATTGTTATGCTCACCACTCAGGTGTTGGGGTTTGGTTGGGCTGGAATTTTCAGAAAATATCTGGTTGAGCCAGAGAAGATGTGGTGGCCCATTATTCTGGTTCAGGTTTCTTTGTTCAGTGCTCTGCATGAGAAGAGCAAGAGGCCTAAAGGAAGCATGACTCGTACCCAGTTCTTCCTCCTAGTGATGATTGCCAGTTTTGCATACTATATCTTCCCCGGCTATCTATTCACTATGCTAAGTTGCTAA

Protein Analysis

238

Amino Acids

27.49

Weight (kDa)

9.13

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 43 - 237 1.8e-52 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AccII CGCG 1 cut(s) 289
AciI CCGC 1 cut(s) 384
AcsI RAATTY 1 cut(s) 513
AfaI GTAC 2 cut(s) 200, 634
AfeI AGCGCT 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 355
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 2 cut(s) 46, 448
AluI AGCT 2 cut(s) 46, 448
Alw21I GWGCWC 3 cut(s) 129, 238, 592
Alw26I GTCTC 1 cut(s) 163
Alw44I GTGCAC 1 cut(s) 234
Aor51HI AGCGCT 1 cut(s) 65
AoxI GGCC 3 cut(s) 335, 554, 611
ApaI GGGCCC 1 cut(s) 339
ApaLI GTGCAC 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 280, 461
ApoI RAATTY 1 cut(s) 513
AspLEI GCGC 2 cut(s) 66, 291
AspS9I GGNCC 4 cut(s) 40, 335, 336, 555
AsuC2I CCSGG 2 cut(s) 333, 687
AsuHPI GGTGA 3 cut(s) 313, 358, 472
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 2 cut(s) 238, 339
BanII GRGCYC 1 cut(s) 339
Bbv12I GWGCWC 3 cut(s) 129, 238, 592
BbvI GCAGC 2 cut(s) 267, 448
BccI CCATC 1 cut(s) 25
BceAI ACGGC 2 cut(s) 196, 276
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 2 cut(s) 333, 687
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 650
BfoI RGCGCY 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 429
BisI GCNGC 2 cut(s) 281, 462
BlsI GCNGC 2 cut(s) 282, 463
Bme1390I CCNGG 2 cut(s) 333, 687
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 4 cut(s) 40, 335, 336, 555
BmiI GGNNCC 2 cut(s) 336, 337
BmrFI CCNGG 2 cut(s) 333, 687
BmrI ACTGGG 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 631
BpmI CTGGAG 1 cut(s) 32
BpuMI CCSGG 2 cut(s) 333, 687
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 332, 685
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 3 cut(s) 187, 637, 663
BseDI CCNNGG 2 cut(s) 332, 685
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 221, 500
BseNI ACTGG 3 cut(s) 187, 637, 663
BseSI GKGCMC 2 cut(s) 238, 339
BseXI GCAGC 2 cut(s) 267, 448
Bsh1236I CGCG 1 cut(s) 289
BshFI GGCC 3 cut(s) 337, 556, 613
BsiHKAI GWGCWC 3 cut(s) 129, 238, 592
BsiSI CCGG 3 cut(s) 122, 332, 687
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 3 cut(s) 337, 556, 613
Bso31I GGTCTC 1 cut(s) 163
Bsp120I GGGCCC 1 cut(s) 335
Bsp1286I GDGCHC 4 cut(s) 129, 238, 339, 592
Bsp143I GATC 2 cut(s) 363, 429
BspACI CCGC 1 cut(s) 384
BspANI GGCC 3 cut(s) 337, 556, 613
BspCNI CTCAG 2 cut(s) 220, 499
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 336, 337
BspMI ACCTGC 1 cut(s) 28
BspQI GCTCTTC 2 cut(s) 73, 596
BspTNI GGTCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 3 cut(s) 187, 637, 663
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 332, 685
BssMI GATC 2 cut(s) 363, 429
Bst4CI ACNGT 3 cut(s) 94, 220, 397
Bst6I CTCTTC 2 cut(s) 73, 596
BstAPI GCANNNNNTGC 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 207, 486, 707
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 2 cut(s) 66, 291
BstKTI GATC 2 cut(s) 366, 432
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 2 cut(s) 363, 429
BstMWI GCNNNNNNNGC 4 cut(s) 43, 242, 286, 668
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 331, 685
BstSLI GKGCMC 2 cut(s) 238, 339
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 267, 448
BstX2I RGATCY 1 cut(s) 429
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 3 cut(s) 337, 556, 613
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 99, 592
BveI ACCTGC 1 cut(s) 28
CfoI GCGC 2 cut(s) 66, 291
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 4 cut(s) 40, 335, 336, 555
Csp6I GTAC 2 cut(s) 199, 633
CviAII CATG 7 cut(s) 162, 229, 268, 325, 356, 596, 625
CviJI RGCY 9 cut(s) 46, 211, 337, 448, 509, 538, 556, 613, 690
CviKI_1 RGCY 9 cut(s) 46, 211, 337, 448, 509, 538, 556, 613, 690
CviQI GTAC 2 cut(s) 199, 633
DdeI CTNAG 3 cut(s) 207, 486, 707
DpnI GATC 2 cut(s) 365, 431
DpnII GATC 2 cut(s) 363, 429
Eam1104I CTCTTC 2 cut(s) 73, 596
EarI CTCTTC 2 cut(s) 73, 596
Eco147I AGGCCT 1 cut(s) 613
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 40
Eco47III AGCGCT 1 cut(s) 65
EcoO109I RGGNCCY 2 cut(s) 335, 336
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 7 cut(s) 165, 232, 271, 328, 359, 599, 628
FatI CATG 7 cut(s) 161, 228, 267, 324, 355, 595, 624
FauI CCCGC 1 cut(s) 377
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 281, 462
FokI GGATG 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 2 cut(s) 281, 462
FspBI CTAG 1 cut(s) 650
GlaI GCGC 2 cut(s) 65, 290
GluI GCNGC 2 cut(s) 281, 462
GsuI CTGGAG 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 3 cut(s) 337, 556, 613
HapII CCGG 3 cut(s) 122, 332, 687
HhaI GCGC 2 cut(s) 66, 291
Hin1II CATG 7 cut(s) 165, 232, 271, 328, 359, 599, 628
Hin6I GCGC 2 cut(s) 64, 289
HinP1I GCGC 2 cut(s) 64, 289
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 3 cut(s) 205, 328, 628
HpaII CCGG 3 cut(s) 122, 332, 687
HphI GGTGA 3 cut(s) 313, 358, 472
Hpy166II GTNNAC 5 cut(s) 90, 184, 216, 236, 321
Hpy188I TCNGA 2 cut(s) 137, 521
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 5 cut(s) 90, 184, 216, 236, 321
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 3 cut(s) 94, 220, 397
HpyCH4IV ACGT 2 cut(s) 116, 140
HpyCH4V TGCA 4 cut(s) 236, 377, 595, 671
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 242, 286, 668
HpyF3I CTNAG 3 cut(s) 207, 486, 707
HpySE526I ACGT 2 cut(s) 116, 140
Hsp92II CATG 7 cut(s) 165, 232, 271, 328, 359, 599, 628
HspAI GCGC 2 cut(s) 64, 289
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 2 cut(s) 363, 429
LguI GCTCTTC 2 cut(s) 73, 596
LmnI GCTCC 2 cut(s) 34, 51
Lsp1109I GCAGC 2 cut(s) 267, 448
MaeI CTAG 1 cut(s) 650
MaeII ACGT 2 cut(s) 116, 140
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 365, 431
MboI GATC 2 cut(s) 363, 429
MboII GAAGA 6 cut(s) 60, 68, 556, 613, 634, 673
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 4 cut(s) 129, 238, 339, 592
MluCI AATT 2 cut(s) 379, 513
MlyI GAGTC 2 cut(s) 199, 622
MnlI CCTC 3 cut(s) 435, 603, 656
MseI TTAA 2 cut(s) 342, 426
MslI CAYNNNNRTG 1 cut(s) 488
MspI CCGG 3 cut(s) 122, 332, 687
MspR9I CCNGG 2 cut(s) 333, 687
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 4 cut(s) 43, 242, 286, 668
NciI CCSGG 2 cut(s) 333, 687
NdeII GATC 2 cut(s) 363, 429
NlaIII CATG 7 cut(s) 165, 232, 271, 328, 359, 599, 628
NlaIV GGNNCC 2 cut(s) 336, 337
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 359
OliI CACNNNNGTG 1 cut(s) 488
PceI AGGCCT 1 cut(s) 613
PciI ACATGT 1 cut(s) 355
PciSI GCTCTTC 2 cut(s) 73, 596
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 2 cut(s) 282, 463
PleI GAGTC 2 cut(s) 199, 622
PpsI GAGTC 2 cut(s) 199, 622
PscI ACATGT 1 cut(s) 355
PspN4I GGNNCC 2 cut(s) 336, 337
PspOMI GGGCCC 1 cut(s) 335
PspPI GGNCC 4 cut(s) 40, 335, 336, 555
PsuI RGATCY 1 cut(s) 429
RsaI GTAC 2 cut(s) 200, 634
RsaNI GTAC 2 cut(s) 199, 633
RseI CAYNNNNRTG 1 cut(s) 488
SapI GCTCTTC 2 cut(s) 73, 596
SaqAI TTAA 2 cut(s) 342, 426
SatI GCNGC 2 cut(s) 281, 462
Sau3AI GATC 2 cut(s) 363, 429
Sau96I GGNCC 4 cut(s) 40, 335, 336, 555
SchI GAGTC 2 cut(s) 199, 622
ScrFI CCNGG 2 cut(s) 333, 687
SduI GDGCHC 4 cut(s) 129, 238, 339, 592
SetI ASST 7 cut(s) 42, 48, 119, 143, 450, 492, 576
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 488
Sse9I AATT 2 cut(s) 379, 513
SseBI AGGCCT 1 cut(s) 613
SsiI CCGC 1 cut(s) 384
SspMI CTAG 1 cut(s) 650
StuI AGGCCT 1 cut(s) 613
StyD4I CCNGG 2 cut(s) 331, 685
TaaI ACNGT 3 cut(s) 94, 220, 397
TaiI ACGT 2 cut(s) 119, 143
TaqI TCGA 1 cut(s) 258
TasI AATT 2 cut(s) 379, 513
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 342, 426
Tru9I TTAA 2 cut(s) 342, 426
TscAI CASTG 2 cut(s) 99, 592
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 280, 461
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 256, 341
TspRI CASTG 2 cut(s) 99, 592
VneI GTGCAC 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 513
XceI RCATGY 1 cut(s) 359
XcmI CCANNNNNNNNNTGG 3 cut(s) 79, 490, 546
XspI CTAG 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.