Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008051.1

Orthogroup ID

OG0006947

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1532

Gene Structure 1532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008051.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 641 bp

atgacagaaagcagcagagaatccatggaagaagaacccaaccaggacgaaatcacagcccctctcatttctagagatgaaggtcaaacctcctcatattcaccgaaagaagaagaaaactcgccggtggagcaagtagccctgacggtgcagaccggagacgacccctccctccccgtcctgaccttccgaatgtgggtcctaggaaccctctcctgcgtcctcctctctttcctcaaccagttcttctggtaccggaccgagccactgtcaataacagccatctcggcccagatagccgtcgtgcccatcggccagttcatggccgctaggatcacgacgcgcgtcttcttcaaagggaccagatgggaattcaccctcaaccctggtcccttcaacgtcaaggaacacgtcctcatcaccatcttcgccaactccggcgcaggaacagtctacgccattcatattgtgacggtggttaaggttttttacaagaaacacatcacgttcttcgtgtccttgcttgtcattataacaactcaggtgttggggtttggctgggctgggattttcagaaggtacttggtcgaaccagcagctatgtggtggccagcaaatttggttcaagtctcattgttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

213

Amino Acids

24.02

Weight (kDa)

5.41

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400
malus_domestica	MD10G1056600.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1
pyrus_communis	pycom10g04350
rosa_chinensis	RchiOBHm_Chr1g0381911 RchiOBHm_Chr2g0161591
rosa_laevigata	RLG00000004821
rosa_multiflora	Rmu_co7963376.1_g000001 Rmu_co8294873.1_g000001 Rmu_co8426875.1_g000001 Rmu_co8431857.1_g000001 Rmu_sc0001742.1_g000002 Rmu_sc0002400.1_g000001 Rmu_sc0008051.1_g000001
rosa_samantha	Rh1BG412500 Rh1CG427300 Rh1DG444800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	453
AccII	CGCG	2 cut(s)	343, 345
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	3 cut(s)	313, 324, 608
AcsI	RAATTY	2 cut(s)	371, 616
AfaI	GTAC	2 cut(s)	254, 581
AfiI	CCNNNNNNNGG	2 cut(s)	196, 322
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	3 cut(s)	355, 397, 626
AjiI	CACGTC	1 cut(s)	412
AjnI	CCWGG	2 cut(s)	42, 385
AluBI	AGCT	1 cut(s)	599
AluI	AGCT	1 cut(s)	599
Alw26I	GTCTC	2 cut(s)	153, 634
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	4 cut(s)	288, 313, 324, 608
ApeKI	GCWGC	2 cut(s)	12, 596
ApoI	RAATTY	2 cut(s)	371, 616
Asp718I	GGTACC	1 cut(s)	252
AspA2I	CCTAGG	1 cut(s)	202
AspLEI	GCGC	2 cut(s)	345, 443
AspS9I	GGNCC	5 cut(s)	199, 258, 289, 360, 389
AsuHPI	GGTGA	3 cut(s)	93, 367, 412
AvaII	GGWCC	4 cut(s)	199, 258, 360, 389
AvrII	CCTAGG	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	309
BalI	TGGCCA	1 cut(s)	610
BanI	GGYRCC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	24, 608
BccI	CCATC	4 cut(s)	290, 317, 360, 431
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	2 cut(s)	44, 387
BcoDI	GTCTC	2 cut(s)	153, 634
BfaI	CTAG	3 cut(s)	72, 203, 330
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	3 cut(s)	13, 327, 597
BlnI	CCTAGG	1 cut(s)	202
BlsI	GCNGC	3 cut(s)	14, 328, 598
Bme1390I	CCNGG	2 cut(s)	44, 387
Bme18I	GGWCC	4 cut(s)	199, 258, 360, 389
BmgBI	CACGTC	1 cut(s)	412
BmgT120I	GGNCC	5 cut(s)	199, 258, 289, 360, 389
BmiI	GGNNCC	5 cut(s)	200, 208, 254, 361, 391
BmrFI	CCNGG	2 cut(s)	44, 387
BoxI	GACNNNNGTC	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	24, 202, 385
BsaWI	WCCGGW	2 cut(s)	155, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 322
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	241, 316
BseBI	CCWGG	2 cut(s)	44, 387
BseDI	CCNNGG	3 cut(s)	24, 202, 385
BseLI	CCNNNNNNNGG	2 cut(s)	196, 322
BseMII	CTCAG	1 cut(s)	554
BseNI	ACTGG	2 cut(s)	241, 316
BseRI	GAGGAG	2 cut(s)	82, 215
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	24, 608
BseYI	CCCAGC	2 cut(s)	558, 563
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	2 cut(s)	343, 345
BshFI	GGCC	4 cut(s)	290, 315, 326, 610
BshNI	GGYRCC	1 cut(s)	252
BsiSI	CCGG	4 cut(s)	125, 156, 256, 438
BslFI	GGGAC	2 cut(s)	373, 375
BslI	CCNNNNNNNGG	2 cut(s)	196, 322
BsmAI	GTCTC	2 cut(s)	153, 634
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	2 cut(s)	373, 375
BsnI	GGCC	4 cut(s)	290, 315, 326, 610
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	333
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	4 cut(s)	290, 315, 326, 610
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	2 cut(s)	343, 345
BspLI	GGNNCC	5 cut(s)	200, 208, 254, 361, 391
BspPI	GGATC	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	241, 316
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	24, 202, 385
BssMI	GATC	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	24, 202
Bst2UI	CCWGG	2 cut(s)	44, 387
Bst4CI	ACNGT	4 cut(s)	148, 270, 451, 475
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	24
BstFNI	CGCG	2 cut(s)	343, 345
BstHHI	GCGC	2 cut(s)	345, 443
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	2 cut(s)	153, 634
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 287, 296
BstNI	CCWGG	2 cut(s)	44, 387
BstPAI	GACNNNNGTC	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	42, 385
BstSLI	GKGCMC	1 cut(s)	309
BstUI	CGCG	2 cut(s)	343, 345
BstV1I	GCAGC	2 cut(s)	24, 608
BstV2I	GAAGAC	1 cut(s)	340
BsuRI	GGCC	4 cut(s)	290, 315, 326, 610
BtgI	CCRYGG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	612
CfoI	GCGC	2 cut(s)	345, 443
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	5 cut(s)	199, 258, 289, 360, 389
CpoI	CGGWCCG	1 cut(s)	258
CseI	GACGC	3 cut(s)	208, 334, 349
Csp6I	GTAC	2 cut(s)	253, 580
CspI	CGGWCCG	1 cut(s)	258
CviAII	CATG	2 cut(s)	25, 322
CviQI	GTAC	2 cut(s)	253, 580
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
EaeI	YGGCCR	3 cut(s)	313, 324, 608
Eco130I	CCWWGG	2 cut(s)	24, 202
Eco47I	GGWCC	4 cut(s)	199, 258, 360, 389
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	42, 385
EcoT14I	CCWWGG	2 cut(s)	24, 202
ErhI	CCWWGG	2 cut(s)	24, 202
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	2 cut(s)	28, 325
FaiI	YATR	6 cut(s)	26, 97, 323, 465, 533, 602
FaqI	GGGAC	2 cut(s)	373, 375
FatI	CATG	2 cut(s)	24, 321
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	3 cut(s)	13, 327, 597
Fsp4HI	GCNGC	3 cut(s)	13, 327, 597
FspBI	CTAG	3 cut(s)	72, 203, 330
GlaI	GCGC	2 cut(s)	344, 442
GluI	GCNGC	3 cut(s)	13, 327, 597
GsaI	CCCAGC	2 cut(s)	562, 567
HaeIII	GGCC	4 cut(s)	290, 315, 326, 610
HapII	CCGG	4 cut(s)	125, 156, 256, 438
HgaI	GACGC	3 cut(s)	208, 334, 349
HhaI	GCGC	2 cut(s)	345, 443
Hin1II	CATG	2 cut(s)	28, 325
Hin6I	GCGC	2 cut(s)	343, 441
HinP1I	GCGC	2 cut(s)	343, 441
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	4 cut(s)	125, 156, 256, 438
HphI	GGTGA	3 cut(s)	93, 367, 412
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	2 cut(s)	191, 575
Hpy188III	TCNNGA	3 cut(s)	72, 181, 337
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	2 cut(s)	305, 343
HpyAV	CCTTC	4 cut(s)	74, 196, 403, 570
HpyCH4III	ACNGT	4 cut(s)	148, 270, 451, 475
HpyCH4IV	ACGT	3 cut(s)	399, 411, 506
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 287, 296
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	3 cut(s)	399, 411, 506
Hsp92II	CATG	2 cut(s)	28, 325
HspAI	GCGC	2 cut(s)	343, 441
KpnI	GGTACC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	24, 608
MaeI	CTAG	3 cut(s)	72, 203, 330
MaeII	ACGT	3 cut(s)	399, 411, 506
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	9 cut(s)	41, 44, 122, 125, 238, 340, 343, 418, 502
MhlI	GDGCHC	1 cut(s)	309
MlsI	TGGCCA	1 cut(s)	610
MluCI	AATT	2 cut(s)	371, 616
MluNI	TGGCCA	1 cut(s)	610
Mox20I	TGGCCA	1 cut(s)	610
MscI	TGGCCA	1 cut(s)	610
MseI	TTAA	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	610
MspI	CCGG	4 cut(s)	125, 156, 256, 438
MspR9I	CCNGG	2 cut(s)	44, 387
MvaI	CCWGG	2 cut(s)	44, 387
MvnI	CGCG	2 cut(s)	343, 345
MwoI	GCNNNNNNNGC	3 cut(s)	130, 287, 296
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	333
NlaIII	CATG	2 cut(s)	28, 325
NlaIV	GGNNCC	5 cut(s)	200, 208, 254, 361, 391
NmeAIII	GCCGAG	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	14, 328, 598
PpuMI	RGGWCCY	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	344
PsiI	TTATAA	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	42, 385
PspFI	CCCAGC	2 cut(s)	558, 563
PspGI	CCWGG	2 cut(s)	42, 385
PspN4I	GGNNCC	5 cut(s)	200, 208, 254, 361, 391
PspPI	GGNCC	5 cut(s)	199, 258, 289, 360, 389
PspPPI	RGGWCCY	1 cut(s)	199
RsaI	GTAC	2 cut(s)	254, 581
RsaNI	GTAC	2 cut(s)	253, 580
Rsr2I	CGGWCCG	1 cut(s)	258
RsrII	CGGWCCG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	3 cut(s)	13, 327, 597
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	5 cut(s)	199, 258, 289, 360, 389
ScrFI	CCNGG	2 cut(s)	44, 387
SduI	GDGCHC	1 cut(s)	309
SgrAI	CRCCGGYG	1 cut(s)	124
SinI	GGWCC	4 cut(s)	199, 258, 360, 389
Sse9I	AATT	2 cut(s)	371, 616
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	3 cut(s)	72, 203, 330
StyD4I	CCNGG	2 cut(s)	42, 385
StyI	CCWWGG	2 cut(s)	24, 202
TaaI	ACNGT	4 cut(s)	148, 270, 451, 475
TaiI	ACGT	3 cut(s)	402, 414, 509
TaqI	TCGA	1 cut(s)	588
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	2 cut(s)	371, 616
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	2 cut(s)	12, 596
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	93, 310, 452
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	4 cut(s)	199, 258, 360, 389
XapI	RAATTY	2 cut(s)	371, 616
XbaI	TCTAGA	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	600
XmaJI	CCTAGG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	3 cut(s)	72, 203, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.