Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8431857.1

Orthogroup ID

OG0006947

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1503

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8431857.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 241 bp

tgctgatcaccattttcgccaacgccggaagtgctttcggatctggctcggcttacgctgtggggattgtcaacatcatcacgaagttttatatgcggaagatcactttcctcgctagctggctgcttattataacaacccaggtgttgggatatggttgggctggactcctgagaaagtatgttgtggagcctgctcatatgtggtggccgaacacactcgttcaggtttcacttttccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0009628 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

80

Amino Acids

8.95

Weight (kDa)

10.12

Isoelectric Point (pI)

25.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400
malus_domestica	MD10G1056600.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1
pyrus_communis	pycom10g04350
rosa_chinensis	RchiOBHm_Chr1g0381911 RchiOBHm_Chr2g0161591
rosa_laevigata	RLG00000004821
rosa_multiflora	Rmu_co7963376.1_g000001 Rmu_co8294873.1_g000001 Rmu_co8426875.1_g000001 Rmu_co8431857.1_g000001 Rmu_sc0001742.1_g000002 Rmu_sc0002400.1_g000001 Rmu_sc0008051.1_g000001
rosa_samantha	Rh1BG412500 Rh1CG427300 Rh1DG444800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	147
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	123
AsuNHI	GCTAGC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	142
BclI	TGATCA	1 cut(s)	5
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	142
BmtI	GCTAGC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	110
BshFI	GGCC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	147
BsnI	GGCC	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	5, 40, 101
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	191
BspOI	GCTAGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	3 cut(s)	5, 40, 101
Bst2UI	CCWGG	1 cut(s)	142
BstC8I	GCNNGC	3 cut(s)	117, 121, 194
BstDEI	CTNAG	1 cut(s)	172
BstKTI	GATC	3 cut(s)	8, 43, 104
BstMBI	GATC	3 cut(s)	5, 40, 101
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	117, 121, 194
CviJI	RGCY	7 cut(s)	47, 52, 119, 123, 163, 192, 210
CviKI_1	RGCY	7 cut(s)	47, 52, 119, 123, 163, 192, 210
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	3 cut(s)	7, 42, 103
DpnII	GATC	3 cut(s)	5, 40, 101
EaeI	YGGCCR	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	140
FaiI	YATR	7 cut(s)	92, 94, 133, 155, 182, 200, 202
FauNDI	CATATG	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	81, 171
Hpy8I	GTNNAC	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	5, 40, 101
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	9 cut(s)	29, 39, 105, 127, 149, 154, 184, 206, 211
Lsp1109I	GCAGC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	116
MalI	GATC	3 cut(s)	7, 42, 103
MboI	GATC	3 cut(s)	5, 40, 101
MboII	GAAGA	1 cut(s)	111
MflI	RGATCY	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	1 cut(s)	121
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	3 cut(s)	5, 40, 101
NheI	GCTAGC	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	191
NmeAIII	GCCGAG	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	125
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	40
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	3 cut(s)	5, 40, 101
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	142
SetI	ASST	3 cut(s)	121, 146, 230
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	140
TseI	GCWGC	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	147
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.