Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006947

Physical Location & Seq

Genomic Coordinates Reverse (-)

4587301 .. 4587849

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGCACTCTAGAGATAGAGCAGCCCTATCCCAACCCCTCCTTTGCCACCACCCCCAAGCCAACTCACTCCCTCGAACCGGACACCGAAGACGACGATGTTTCTCCGATAGAACAAGTCCGTCTTACGGTGACCAACACCGACGACCCGACCCTGCCCGTATGGACATTTCGGATGTGGTTCTTGGGCCTTGTCTCATGTGCCCTCCTCTCATTTCTCAACCAATTCTTCTCCTACAGAACTGAGCCCCTCATCATCACCCAAATCACTGTCCAAGTATCAACACTCCCTATTGGTTATTTCATGGCCAAAGTCCTCCCAACGAAAACGTTCCACGTACCCGGGTTCGGGTCCCGGACGTTTTCGTTGAATCCGGGTCCTTTTAACATAAAAGAGCACGTCCTGATTACTATTTTTGCTAATGCCGGAAGTGCTTTTGGAGCTGGCTCAGCTTATGCTGTTGGGATTGTTAACATAATCAAAGCGTTTTATCACCGGAAAATCTCTCTTCTGGCTAGTTGGCTGCTCATCATCACTACCCAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0009628 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

183

Amino Acids

20.23

Weight (kDa)

6.04

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	54 - 181	1.8e-25	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400
malus_domestica	MD10G1056600.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1
pyrus_communis	pycom10g04350
rosa_chinensis	RchiOBHm_Chr1g0381911 RchiOBHm_Chr2g0161591
rosa_laevigata	RLG00000004821
rosa_multiflora	Rmu_co7963376.1_g000001 Rmu_co8294873.1_g000001 Rmu_co8426875.1_g000001 Rmu_co8431857.1_g000001 Rmu_sc0001742.1_g000002 Rmu_sc0002400.1_g000001 Rmu_sc0008051.1_g000001
rosa_samantha	Rh1BG412500 Rh1CG427300 Rh1DG444800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	306
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	4 cut(s)	79, 127, 347, 348
AgsI	TTSAA	1 cut(s)	370
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	540
AluBI	AGCT	2 cut(s)	443, 452
AluI	AGCT	2 cut(s)	443, 452
Alw21I	GWGCWC	2 cut(s)	8, 399
Alw26I	GTCTC	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	187, 306
ApeKI	GCWGC	2 cut(s)	22, 523
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	187, 351, 377
AsuC2I	CCSGG	4 cut(s)	342, 343, 355, 375
AsuHPI	GGTGA	3 cut(s)	142, 250, 485
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	351, 377
BaeGI	GKGCMC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	8, 399
BbvI	GCAGC	2 cut(s)	34, 510
BciT130I	CCWGG	1 cut(s)	542
BcnI	CCSGG	4 cut(s)	342, 343, 355, 375
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	11, 516
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	2 cut(s)	23, 524
BlpI	GCTNAGC	1 cut(s)	448
BlsI	GCNGC	2 cut(s)	24, 525
Bme1390I	CCNGG	5 cut(s)	342, 343, 355, 375, 542
Bme18I	GGWCC	2 cut(s)	351, 377
BmeT110I	CYCGRG	1 cut(s)	341
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	3 cut(s)	187, 351, 377
BmiI	GGNNCC	3 cut(s)	352, 353, 378
BmrFI	CCNGG	5 cut(s)	342, 343, 355, 375, 542
BpiI	GAAGAC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	448
BpuMI	CCSGG	4 cut(s)	342, 343, 355, 375
BsaAI	YACGTR	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	341, 540
BsaWI	WCCGGW	2 cut(s)	79, 495
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 127, 347, 348
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	2 cut(s)	341, 540
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	4 cut(s)	79, 127, 347, 348
BseMII	CTCAG	2 cut(s)	234, 462
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	34, 510
BshFI	GGCC	2 cut(s)	189, 308
BsiHKAI	GWGCWC	2 cut(s)	8, 399
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	6 cut(s)	80, 342, 355, 374, 426, 496
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	4 cut(s)	79, 127, 347, 348
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	189, 308
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	4 cut(s)	8, 205, 249, 399
Bsp1720I	GCTNAGC	1 cut(s)	448
BspANI	GGCC	2 cut(s)	189, 308
BspCNI	CTCAG	2 cut(s)	235, 461
BspLI	GGNNCC	3 cut(s)	352, 353, 378
BssECI	CCNNGG	2 cut(s)	341, 540
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	2 cut(s)	130, 271
Bst6I	CTCTTC	1 cut(s)	513
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	2 cut(s)	243, 448
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 440, 449
BstNI	CCWGG	1 cut(s)	542
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	5 cut(s)	340, 341, 353, 373, 540
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	34, 510
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	189, 308
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	445
Cfr13I	GGNCC	3 cut(s)	187, 351, 377
Cfr9I	CCCGGG	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	2 cut(s)	198, 304
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	2 cut(s)	243, 448
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	351, 377
Eco88I	CYCGRG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	130
EcoO109I	RGGNCCY	2 cut(s)	351, 377
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	2 cut(s)	201, 307
FaiI	YATR	7 cut(s)	163, 199, 305, 389, 456, 476, 547
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	2 cut(s)	197, 303
Fnu4HI	GCNGC	2 cut(s)	23, 524
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	23, 524
FspBI	CTAG	2 cut(s)	11, 516
GluI	GCNGC	2 cut(s)	23, 524
HaeIII	GGCC	2 cut(s)	189, 308
HapII	CCGG	6 cut(s)	80, 342, 355, 374, 426, 496
Hin1II	CATG	2 cut(s)	201, 307
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	1 cut(s)	370
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	6 cut(s)	80, 342, 355, 374, 426, 496
HphI	GGTGA	3 cut(s)	142, 250, 485
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	108, 174
Hpy188III	TCNNGA	2 cut(s)	11, 403
Hpy8I	GTNNAC	1 cut(s)	472
Hpy99I	CGWCG	2 cut(s)	98, 146
HpyCH4III	ACNGT	2 cut(s)	130, 271
HpyCH4IV	ACGT	4 cut(s)	329, 336, 359, 399
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 440, 449
HpyF3I	CTNAG	2 cut(s)	243, 448
HpySE526I	ACGT	4 cut(s)	329, 336, 359, 399
Hsp92II	CATG	2 cut(s)	201, 307
KflI	GGGWCCC	1 cut(s)	351
KspAI	GTTAAC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	2 cut(s)	34, 510
MaeI	CTAG	2 cut(s)	11, 516
MaeII	ACGT	4 cut(s)	329, 336, 359, 399
MaeIII	GTNAC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	101, 220, 500
MhlI	GDGCHC	4 cut(s)	8, 205, 249, 399
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	1 cut(s)	224
MluNI	TGGCCA	1 cut(s)	308
MnlI	CCTC	6 cut(s)	49, 83, 215, 218, 260, 326
Mox20I	TGGCCA	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	2 cut(s)	384, 471
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	6 cut(s)	80, 342, 355, 374, 426, 496
MspR9I	CCNGG	5 cut(s)	342, 343, 355, 375, 542
MvaI	CCWGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	3 cut(s)	431, 440, 449
NciI	CCSGG	4 cut(s)	342, 343, 355, 375
NlaIII	CATG	2 cut(s)	201, 307
NlaIV	GGNNCC	3 cut(s)	352, 353, 378
NmuCI	GTSAC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	24, 525
Ppu21I	YACGTR	1 cut(s)	337
PpuMI	RGGWCCY	2 cut(s)	351, 377
Psp1406I	AACGTT	1 cut(s)	329
Psp5II	RGGWCCY	2 cut(s)	351, 377
Psp6I	CCWGG	1 cut(s)	540
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	3 cut(s)	352, 353, 378
PspPI	GGNCC	3 cut(s)	187, 351, 377
PspPPI	RGGWCCY	2 cut(s)	351, 377
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	384, 471
SatI	GCNGC	2 cut(s)	23, 524
Sau96I	GGNCC	3 cut(s)	187, 351, 377
ScrFI	CCNGG	5 cut(s)	342, 343, 355, 375, 542
SduI	GDGCHC	4 cut(s)	8, 205, 249, 399
SetI	ASST	7 cut(s)	332, 339, 362, 402, 445, 454, 546
SfcI	CTRYAG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	351, 377
SmaI	CCCGGG	1 cut(s)	343
Sse9I	AATT	1 cut(s)	224
SspMI	CTAG	2 cut(s)	11, 516
StyD4I	CCNGG	5 cut(s)	340, 341, 353, 373, 540
TaaI	ACNGT	2 cut(s)	130, 271
TaiI	ACGT	4 cut(s)	332, 339, 362, 402
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	2 cut(s)	384, 471
Tru9I	TTAA	2 cut(s)	384, 471
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	22, 523
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	292
TspGWI	ACGGA	1 cut(s)	110
TspMI	CCCGGG	1 cut(s)	341
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	351, 377
XbaI	TCTAGA	1 cut(s)	10
XmaI	CCCGGG	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	2 cut(s)	11, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.