RLG00000004821

oligopeptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006947
Physical Location & Seq
Reverse (-)
62798351 .. 62799322
972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004821

Sequence Viewer

Length: 684 bp
ATGGAAGAAGAAGACAACCAGGACGAAATCACAGCCCCTCTCATTTCTAGAGATGAAGGTCAAACCTCCTCATATTCACCGAAAGAAGAAGAAAACTCGCCGGTGGAGCAAGTAGCCCTGACGGTGCCGACCGGAGACGACCCCTCCCTCCCCATCCTGACCTTCCGAATGTGGGTCTTAGGAGCCCTGTCCTGCGTTCTCCTCTCTTTCCTCATTCAGTTCTTCTGGTACCGGACCGAGCCACTGACGATAACAGCCATCTCGGCCCAGACAGCCGTCGTGCCCATCGGCCAGTTCATGGCCTCTAGGATCACGACGCGCGTCTTCTTCAAAGGGACCAGATGGGAATTCACCCTCAACCCTGGTCCTTTCAACGTCAAGGAACACGTCCTCATCACCATCTTCGCCAACTCCGGTGCCGGAACAGTCTACACCATTCATATTGTGACGGTGGTTAAGGTTTTTTACAAGAAGCACATCACGTTCTTCGTGTCCTTGCTTGTCATCATAACAACTCAGGTGTTGGGGTTTGGCTGGGCTGGGATTTTCAGAAGGTACTTGGTCGAACCAGCAGCTATGTGGTGGCCAGCAAATTTGGTTCAAGTCTCATTGTTCAGATTCCGGTATGTTTGGATGGTGATGGAGGTGATTGGCCTTGACTGGTTGAGTGTTGGAACTAATTAG

Protein Analysis

228

Amino Acids

25.78

Weight (kDa)

5.41

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 53 - 206 6.5e-35 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 228
AccB1I GGYRCC 3 cut(s) 124, 228, 416
AccB7I CCANNNNNTGG 1 cut(s) 298
AccI GTMKAC 1 cut(s) 429
AccII CGCG 2 cut(s) 319, 321
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 2 cut(s) 289, 584
AcsI RAATTY 2 cut(s) 347, 592
AfaI GTAC 2 cut(s) 230, 557
AfiI CCNNNNNNNGG 2 cut(s) 172, 298
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 3 cut(s) 331, 373, 602
AjiI CACGTC 1 cut(s) 388
AjnI CCWGG 2 cut(s) 18, 361
AluBI AGCT 1 cut(s) 575
AluI AGCT 1 cut(s) 575
Alw26I GTCTC 2 cut(s) 129, 610
AlwI GGATC 1 cut(s) 317
AoxI GGCC 5 cut(s) 264, 289, 300, 584, 652
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 2 cut(s) 347, 592
Asp718I GGTACC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 4 cut(s) 234, 265, 336, 365
AsuHPI GGTGA 5 cut(s) 69, 343, 388, 649, 658
AvaII GGWCC 3 cut(s) 234, 336, 365
BaeGI GKGCMC 1 cut(s) 285
BalI TGGCCA 1 cut(s) 586
BanI GGYRCC 3 cut(s) 124, 228, 416
BanII GRGCYC 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 18, 316
BbvI GCAGC 1 cut(s) 584
BccI CCATC 7 cut(s) 161, 266, 293, 336, 407, 628, 634
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 20, 363
BcoDI GTCTC 2 cut(s) 129, 610
BfaI CTAG 2 cut(s) 48, 306
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme1390I CCNGG 2 cut(s) 20, 363
Bme18I GGWCC 3 cut(s) 234, 336, 365
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 4 cut(s) 234, 265, 336, 365
BmiI GGNNCC 5 cut(s) 126, 184, 230, 337, 418
BmrFI CCNGG 2 cut(s) 20, 363
BoxI GACNNNNGTC 2 cut(s) 275, 320
BpiI GAAGAC 2 cut(s) 18, 316
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 4 cut(s) 131, 231, 413, 621
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 298
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 292, 665
BseBI CCWGG 2 cut(s) 20, 363
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 2 cut(s) 153, 639
BseLI CCNNNNNNNGG 2 cut(s) 172, 298
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 2 cut(s) 292, 665
BseRI GAGGAG 2 cut(s) 58, 191
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 1 cut(s) 584
BseYI CCCAGC 2 cut(s) 534, 539
Bsh1236I CGCG 2 cut(s) 319, 321
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 5 cut(s) 266, 291, 302, 586, 654
BshNI GGYRCC 3 cut(s) 124, 228, 416
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 6 cut(s) 101, 132, 232, 414, 420, 622
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 172, 298
BsmAI GTCTC 2 cut(s) 129, 610
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 5 cut(s) 266, 291, 302, 586, 654
Bsp1286I GDGCHC 2 cut(s) 187, 285
Bsp143I GATC 1 cut(s) 309
BspANI GGCC 5 cut(s) 266, 291, 302, 586, 654
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 2 cut(s) 319, 321
BspLI GGNNCC 5 cut(s) 126, 184, 230, 337, 418
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 3 cut(s) 124, 228, 416
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 2 cut(s) 292, 665
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 20, 363
Bst4CI ACNGT 3 cut(s) 124, 427, 451
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 2 cut(s) 178, 516
BstF5I GGATG 2 cut(s) 153, 639
BstFNI CGCG 2 cut(s) 319, 321
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 2 cut(s) 129, 610
BstMBI GATC 1 cut(s) 309
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 3 cut(s) 106, 263, 272
BstNI CCWGG 2 cut(s) 20, 363
BstPAI GACNNNNGTC 2 cut(s) 275, 320
BstSCI CCNGG 2 cut(s) 18, 361
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 2 cut(s) 319, 321
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 2 cut(s) 18, 316
BsuRI GGCC 5 cut(s) 266, 291, 302, 586, 654
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 2 cut(s) 153, 639
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 588
CfoI GCGC 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 4 cut(s) 234, 265, 336, 365
CpoI CGGWCCG 1 cut(s) 234
CseI GACGC 2 cut(s) 310, 325
Csp6I GTAC 2 cut(s) 229, 556
CspI CGGWCCG 1 cut(s) 234
CviAII CATG 1 cut(s) 298
CviQI GTAC 2 cut(s) 229, 556
DdeI CTNAG 2 cut(s) 178, 516
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
EaeI YGGCCR 2 cut(s) 289, 584
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 3 cut(s) 234, 336, 365
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 18, 361
EcoT38I GRGCYC 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 1 cut(s) 301
FaiI YATR 6 cut(s) 73, 299, 441, 509, 578, 627
FaqI GGGAC 1 cut(s) 349
FatI CATG 1 cut(s) 297
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 2 cut(s) 140, 646
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 2 cut(s) 48, 306
GlaI GCGC 1 cut(s) 320
GluI GCNGC 1 cut(s) 573
GsaI CCCAGC 2 cut(s) 538, 543
HaeIII GGCC 5 cut(s) 266, 291, 302, 586, 654
HapII CCGG 6 cut(s) 101, 132, 232, 414, 420, 622
HgaI GACGC 2 cut(s) 310, 325
HhaI GCGC 1 cut(s) 321
Hin1II CATG 1 cut(s) 301
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HinfI GANTC 1 cut(s) 618
HpaII CCGG 6 cut(s) 101, 132, 232, 414, 420, 622
HphI GGTGA 5 cut(s) 69, 343, 388, 649, 658
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 3 cut(s) 167, 551, 617
Hpy188III TCNNGA 3 cut(s) 48, 157, 313
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 2 cut(s) 281, 319
HpyAV CCTTC 3 cut(s) 50, 172, 546
HpyCH4III ACNGT 3 cut(s) 124, 427, 451
HpyCH4IV ACGT 3 cut(s) 375, 387, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 263, 272
HpyF3I CTNAG 2 cut(s) 178, 516
HpySE526I ACGT 3 cut(s) 375, 387, 482
Hsp92II CATG 1 cut(s) 301
HspAI GCGC 1 cut(s) 319
KpnI GGTACC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 2 cut(s) 106, 182
Lsp1109I GCAGC 1 cut(s) 584
MaeI CTAG 2 cut(s) 48, 306
MaeII ACGT 3 cut(s) 375, 387, 482
MaeIII GTNAC 1 cut(s) 445
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MhlI GDGCHC 2 cut(s) 187, 285
MlsI TGGCCA 1 cut(s) 586
MluCI AATT 3 cut(s) 347, 592, 679
MluNI TGGCCA 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 652
Mox20I TGGCCA 1 cut(s) 586
MscI TGGCCA 1 cut(s) 586
MseI TTAA 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 586
MspI CCGG 6 cut(s) 101, 132, 232, 414, 420, 622
MspR9I CCNGG 2 cut(s) 20, 363
MvaI CCWGG 2 cut(s) 20, 363
MvnI CGCG 2 cut(s) 319, 321
MwoI GCNNNNNNNGC 3 cut(s) 106, 263, 272
NdeII GATC 1 cut(s) 309
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 5 cut(s) 126, 184, 230, 337, 418
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 618
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 1 cut(s) 574
PshAI GACNNNNGTC 2 cut(s) 275, 320
Psp6I CCWGG 2 cut(s) 18, 361
PspFI CCCAGC 2 cut(s) 534, 539
PspGI CCWGG 2 cut(s) 18, 361
PspN4I GGNNCC 5 cut(s) 126, 184, 230, 337, 418
PspPI GGNCC 4 cut(s) 234, 265, 336, 365
RsaI GTAC 2 cut(s) 230, 557
RsaNI GTAC 2 cut(s) 229, 556
Rsr2I CGGWCCG 1 cut(s) 234
RsrII CGGWCCG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 4 cut(s) 234, 265, 336, 365
ScrFI CCNGG 2 cut(s) 20, 363
SduI GDGCHC 2 cut(s) 187, 285
SgrAI CRCCGGYG 1 cut(s) 100
SinI GGWCC 3 cut(s) 234, 336, 365
Sse9I AATT 3 cut(s) 347, 592, 679
SspMI CTAG 2 cut(s) 48, 306
StyD4I CCNGG 2 cut(s) 18, 361
TaaI ACNGT 3 cut(s) 124, 427, 451
TaiI ACGT 3 cut(s) 378, 390, 485
TaqI TCGA 1 cut(s) 564
TaqII GACCGA 1 cut(s) 251
TasI AATT 3 cut(s) 347, 592, 679
TfiI GAWTC 1 cut(s) 618
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 3 cut(s) 69, 286, 428
TspRI CASTG 1 cut(s) 249
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 3 cut(s) 234, 336, 365
XapI RAATTY 2 cut(s) 347, 592
XbaI TCTAGA 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 576
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 2 cut(s) 48, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.