Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006947

Physical Location & Seq

Genomic Coordinates Forward (+)

77511209 .. 77512397

Gene Structure 1189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGAACTGTTATGGAATTAGAAGCTCCCAAACCCAAAATCGAAGACGACGACGATGTCTCCCCCGTCGAGCAAGTCCGTCTGACGGTGACCAACGACGACGACCCGACCCTCCCCGTCTGGACCTTCCGAATGTGGTTCCTAGGCCTCCTCTCCTGCGCCCTCCTCTCCTTTCTCAACCAGTTCTTCGCCTACAGAACCGAGCCACTCATCATCACCCAAATCACCGTACAAGTCGCTACGCTCCCCATAGGCCACTTCATGGCCAGAATCCTCCCCACCACCAAGTTCCGGATCCCTGGACTTGGCTCTGAGGTTTCCCTGAACCCCGGTCCGTTCAACATCAAAGAGCATGTGCTGATCACCATTTTCGCCAACGCCGGAAGTGCTTTCGGATCTGGCTCGGCTTACGCTGTGGGGATTGTCAACATCATCACGAAGTTTTATATGCGGAAGATCACTTTCCTCGCTAGCTGGCTGCTTATTATAACAACCCAGGTGTTGGGATATGGTTGGGCTGGACTCCTGAGAAAGTATGTTGTGGAGCCTGCTCATATGTGGTGGCCGAACACACTCGTTCAGGTTTCACTTTTCCGGTATGCCTTTTATCATCTTCTTCATCATTATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0009628 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

210

Amino Acids

23.79

Weight (kDa)

7.02

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	40 - 199	1e-38	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400
malus_domestica	MD10G1056600.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1
pyrus_communis	pycom10g04350
rosa_chinensis	RchiOBHm_Chr1g0381911 RchiOBHm_Chr2g0161591
rosa_laevigata	RLG00000004821
rosa_multiflora	Rmu_co7963376.1_g000001 Rmu_co8294873.1_g000001 Rmu_co8426875.1_g000001 Rmu_co8431857.1_g000001 Rmu_sc0001742.1_g000002 Rmu_sc0002400.1_g000001 Rmu_sc0008051.1_g000001
rosa_samantha	Rh1BG412500 Rh1CG427300 Rh1DG444800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	488, 631
AasI	GACNNNNNNGTC	1 cut(s)	56
AccB7I	CCANNNNNTGG	2 cut(s)	262, 502
AccIII	TCCGGA	1 cut(s)	291
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	3 cut(s)	289, 302, 403
AcoI	YGGCCR	2 cut(s)	264, 563
AfaI	GTAC	1 cut(s)	231
AfiI	CCNNNNNNNGG	5 cut(s)	85, 262, 291, 305, 502
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	298, 495
AluBI	AGCT	2 cut(s)	26, 474
AluI	AGCT	2 cut(s)	26, 474
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	3 cut(s)	289, 302, 403
Aor13HI	TCCGGA	1 cut(s)	291
AoxI	GGCC	4 cut(s)	145, 253, 264, 563
ApeKI	GCWGC	1 cut(s)	478
AspA2I	CCTAGG	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	123, 332
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	4 cut(s)	100, 208, 217, 355
AsuNHI	GCTAGC	1 cut(s)	470
AvaII	GGWCC	2 cut(s)	123, 332
AvrII	CCTAGG	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	465
BciT130I	CCWGG	2 cut(s)	300, 497
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	143, 471
BfmI	CTRYAG	1 cut(s)	193
BisI	GCNGC	1 cut(s)	479
BlnI	CCTAGG	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	480
Bme1390I	CCNGG	3 cut(s)	300, 330, 497
Bme18I	GGWCC	2 cut(s)	123, 332
BmgT120I	GGNCC	2 cut(s)	123, 332
BmiI	GGNNCC	3 cut(s)	140, 296, 546
BmrFI	CCNGG	3 cut(s)	300, 330, 497
BmtI	GCTAGC	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	4 cut(s)	142, 298, 328, 495
BsaWI	WCCGGW	2 cut(s)	291, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 262, 291, 305, 502
Bse1I	ACTGG	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	300, 497
BseDI	CCNNGG	4 cut(s)	142, 298, 328, 495
BseLI	CCNNNNNNNGG	5 cut(s)	85, 262, 291, 305, 502
BseMII	CTCAG	2 cut(s)	303, 518
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	2 cut(s)	140, 155
BseXI	GCAGC	1 cut(s)	465
BshFI	GGCC	4 cut(s)	147, 255, 266, 565
BsiSI	CCGG	4 cut(s)	292, 330, 381, 595
BslI	CCNNNNNNNGG	5 cut(s)	85, 262, 291, 305, 502
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	4 cut(s)	147, 255, 266, 565
Bsp13I	TCCGGA	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	294, 360, 395, 456
BspACI	CCGC	1 cut(s)	451
BspANI	GGCC	4 cut(s)	147, 255, 266, 565
BspCNI	CTCAG	2 cut(s)	304, 519
BspEI	TCCGGA	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	140, 296, 546
BspOI	GCTAGC	1 cut(s)	474
BspPI	GGATC	3 cut(s)	289, 302, 403
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	4 cut(s)	142, 298, 328, 495
BssMI	GATC	4 cut(s)	294, 360, 395, 456
BssT1I	CCWWGG	1 cut(s)	142
Bst2UI	CCWGG	2 cut(s)	300, 497
Bst4CI	ACNGT	3 cut(s)	10, 88, 229
BstC8I	GCNNGC	3 cut(s)	472, 476, 549
BstDEI	CTNAG	2 cut(s)	312, 527
BstEII	GGTNACC	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	4 cut(s)	297, 363, 398, 459
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	4 cut(s)	294, 360, 395, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	2 cut(s)	300, 497
BstNSI	RCATGY	1 cut(s)	356
BstPI	GGTNACC	1 cut(s)	88
BstSCI	CCNGG	3 cut(s)	298, 328, 495
BstSFI	CTRYAG	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	294, 395
BstYI	RGATCY	2 cut(s)	294, 395
BsuRI	GGCC	4 cut(s)	147, 255, 266, 565
Cac8I	GCNNGC	3 cut(s)	472, 476, 549
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	123, 332
CpoI	CGGWCCG	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	230
CspI	CGGWCCG	1 cut(s)	332
CviAII	CATG	2 cut(s)	262, 353
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	2 cut(s)	312, 527
DpnI	GATC	4 cut(s)	296, 362, 397, 458
DpnII	GATC	4 cut(s)	294, 360, 395, 456
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	2 cut(s)	264, 563
Eco130I	CCWWGG	1 cut(s)	142
Eco147I	AGGCCT	1 cut(s)	147
Eco47I	GGWCC	2 cut(s)	123, 332
Eco91I	GGTNACC	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	298, 495
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	265, 356
FatI	CATG	2 cut(s)	261, 352
FauNDI	CATATG	1 cut(s)	555
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	2 cut(s)	143, 471
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	479
HaeIII	GGCC	4 cut(s)	147, 255, 266, 565
HapII	CCGG	4 cut(s)	292, 330, 381, 595
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	265, 356
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	2 cut(s)	270, 522
HpaII	CCGG	4 cut(s)	292, 330, 381, 595
HphI	GGTGA	4 cut(s)	100, 208, 217, 355
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	4 cut(s)	84, 131, 313, 395
Hpy188III	TCNNGA	4 cut(s)	121, 292, 436, 526
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	5 cut(s)	53, 56, 71, 101, 104
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	10, 88, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	2 cut(s)	312, 527
Hsp92II	CATG	2 cut(s)	265, 356
HspAI	GCGC	1 cut(s)	159
Kpn2I	TCCGGA	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	294, 360, 395, 456
LmnI	GCTCC	3 cut(s)	31, 249, 544
Lsp1109I	GCAGC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	143, 471
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	4 cut(s)	296, 362, 397, 458
MboI	GATC	4 cut(s)	294, 360, 395, 456
MboII	GAAGA	5 cut(s)	56, 178, 466, 605, 608
MflI	RGATCY	2 cut(s)	294, 395
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	516
MnlI	CCTC	8 cut(s)	122, 158, 161, 173, 176, 284, 307, 476
Mox20I	TGGCCA	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	4 cut(s)	292, 330, 381, 595
MspR9I	CCNGG	3 cut(s)	300, 330, 497
MvaI	CCWGG	2 cut(s)	300, 497
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	330
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	4 cut(s)	294, 360, 395, 456
NheI	GCTAGC	1 cut(s)	470
NlaIII	CATG	2 cut(s)	265, 356
NlaIV	GGNNCC	3 cut(s)	140, 296, 546
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	56
PflMI	CCANNNNNTGG	2 cut(s)	262, 502
PkrI	GCNGC	1 cut(s)	480
PleI	GAGTC	1 cut(s)	516
PpsI	GAGTC	1 cut(s)	516
PsiI	TTATAA	2 cut(s)	488, 631
Psp6I	CCWGG	2 cut(s)	298, 495
PspEI	GGTNACC	1 cut(s)	88
PspGI	CCWGG	2 cut(s)	298, 495
PspN4I	GGNNCC	3 cut(s)	140, 296, 546
PspPI	GGNCC	2 cut(s)	123, 332
PsuI	RGATCY	2 cut(s)	294, 395
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
Rsr2I	CGGWCCG	1 cut(s)	332
RsrII	CGGWCCG	1 cut(s)	332
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	4 cut(s)	294, 360, 395, 456
Sau96I	GGNCC	2 cut(s)	123, 332
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	3 cut(s)	300, 330, 497
SetI	ASST	6 cut(s)	28, 128, 318, 476, 501, 585
SfcI	CTRYAG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	123, 332
Sse9I	AATT	1 cut(s)	17
SseBI	AGGCCT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	451
SspMI	CTAG	2 cut(s)	143, 471
StuI	AGGCCT	1 cut(s)	147
StyD4I	CCNGG	3 cut(s)	298, 328, 495
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	3 cut(s)	10, 88, 229
TaqI	TCGA	2 cut(s)	42, 69
TasI	AATT	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	250, 608
TspGWI	ACGGA	2 cut(s)	68, 324
Tth111I	GACNNNGTC	1 cut(s)	56
Van91I	CCANNNNNTGG	2 cut(s)	262, 502
VpaK11BI	GGWCC	2 cut(s)	123, 332
XceI	RCATGY	1 cut(s)	356
XmaJI	CCTAGG	1 cut(s)	142
XspI	CTAG	2 cut(s)	143, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.