Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7963376.1

Orthogroup ID

OG0006947

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 363

Gene Structure 362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7963376.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 362 bp

atggagataaataatagtagtgctgtaaagatggagcaggtccagcaggaagatgagcgctcttccattgagcaagtggagttgacagtgccgaaaacagatgaccccacgttgccggtgctcacattccgaacgtgggttctgggtttggtctcatgtgtccttctctcctttgtgaaccagtttttctggtacaggactcagccgttatctgtgacaggcatcagtgcacagattgctgtggtgccagtcggacatttcatggcgagagtgctgcccacgcgccgttttttccaaggtactcggtttgagttcaccatgaatccggggccttttaatgtcaaggaacatgttttgatcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0015833 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0022857 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

121

Amino Acids

13.82

Weight (kDa)

6.07

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400
malus_domestica	MD10G1056600.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1
pyrus_communis	pycom10g04350
rosa_chinensis	RchiOBHm_Chr1g0381911 RchiOBHm_Chr2g0161591
rosa_laevigata	RLG00000004821
rosa_multiflora	Rmu_co7963376.1_g000001 Rmu_co8294873.1_g000001 Rmu_co8426875.1_g000001 Rmu_co8431857.1_g000001 Rmu_sc0001742.1_g000002 Rmu_sc0002400.1_g000001 Rmu_sc0008051.1_g000001
rosa_samantha	Rh1BG412500 Rh1CG427300 Rh1DG444800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	244
AccII	CGCG	1 cut(s)	283
AfaI	GTAC	2 cut(s)	194, 301
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	349
Alw21I	GWGCWC	2 cut(s)	123, 232
Alw26I	GTCTC	1 cut(s)	157
Alw44I	GTGCAC	1 cut(s)	228
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	1 cut(s)	329
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	274
AspLEI	GCGC	2 cut(s)	60, 285
AspS9I	GGNCC	2 cut(s)	40, 329
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	244
Bbv12I	GWGCWC	2 cut(s)	123, 232
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	2 cut(s)	190, 270
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 329
BmiI	GGNNCC	2 cut(s)	246, 330
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	295, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	181, 248
BseDI	CCNNGG	2 cut(s)	295, 326
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	2 cut(s)	181, 248
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	244
BsiHKAI	GWGCWC	2 cut(s)	123, 232
BsiSI	CCGG	2 cut(s)	116, 326
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	123, 232
Bsp143I	GATC	1 cut(s)	357
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	246, 330
BspMI	ACCTGC	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	181, 248
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	295, 326
BssMI	GATC	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	60, 285
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 236, 280
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	93, 232
BveI	ACCTGC	1 cut(s)	28
CfoI	GCGC	2 cut(s)	60, 285
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	40, 329
Csp6I	GTAC	2 cut(s)	193, 300
CviAII	CATG	4 cut(s)	156, 262, 319, 350
CviJI	RGCY	2 cut(s)	205, 331
CviKI_1	RGCY	2 cut(s)	205, 331
CviQI	GTAC	2 cut(s)	193, 300
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	40
Eco47III	AGCGCT	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	4 cut(s)	159, 265, 322, 353
FaiI	YATR	4 cut(s)	157, 263, 320, 351
FatI	CATG	4 cut(s)	155, 261, 318, 349
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	275
GlaI	GCGC	2 cut(s)	59, 284
GluI	GCNGC	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	2 cut(s)	116, 326
HhaI	GCGC	2 cut(s)	60, 285
Hin1II	CATG	4 cut(s)	159, 265, 322, 353
Hin6I	GCGC	2 cut(s)	58, 283
HinP1I	GCGC	2 cut(s)	58, 283
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	199, 322
HpaII	CCGG	2 cut(s)	116, 326
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	4 cut(s)	84, 178, 230, 315
Hpy188I	TCNGA	2 cut(s)	131, 254
Hpy8I	GTNNAC	4 cut(s)	84, 178, 230, 315
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	2 cut(s)	110, 134
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 236, 280
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	2 cut(s)	110, 134
Hsp92II	CATG	4 cut(s)	159, 265, 322, 353
HspAI	GCGC	2 cut(s)	58, 283
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	357
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	231
MaeII	ACGT	2 cut(s)	110, 134
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	2 cut(s)	54, 62
MhlI	GDGCHC	2 cut(s)	123, 232
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	232
MseI	TTAA	1 cut(s)	336
MspI	CCGG	2 cut(s)	116, 326
MspR9I	CCNGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	3 cut(s)	43, 236, 280
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	4 cut(s)	159, 265, 322, 353
NlaIV	GGNNCC	2 cut(s)	246, 330
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	353
PciI	ACATGT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	246, 330
PspPI	GGNCC	2 cut(s)	40, 329
RsaI	GTAC	2 cut(s)	194, 301
RsaNI	GTAC	2 cut(s)	193, 300
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	2 cut(s)	40, 329
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	123, 232
SetI	ASST	4 cut(s)	42, 113, 137, 301
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	40
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	2 cut(s)	113, 137
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	2 cut(s)	93, 232
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	250, 335
TspRI	CASTG	2 cut(s)	93, 232
VneI	GTGCAC	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	40
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.