Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001742.1

Orthogroup ID

OG0006947

Physical Location & Seq

Genomic Coordinates Forward (+)

1373 .. 1786

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001742.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgggaactgttatggaattagaagctcccaaacccaaaatcgaagacgacgacgacgtctcccccgtcgagcaagtccgtctgacggtgaccaacgacgacgacccgaccctccccgtctggaccttccgaatgtggttcctaggcctcctctcctgcgccctcctctcctttctcaaccagttcttcgcctacagaaccgagccactcatcatcacccaaatcaccgtacaagtcgctacgctccccataggccacttcatggccagaatcctccccaccaccaagttccggatccccggacttggctctgaggtttccctgaaccccggtcccttcaacatcaaagagcatgtgctgatcgtagttgcacagtacagaatcgtcaaatattataatgtcaactgtatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0009628 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

137

Amino Acids

15.55

Weight (kDa)

5.27

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400
malus_domestica	MD10G1056600.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1
pyrus_communis	pycom10g04350
rosa_chinensis	RchiOBHm_Chr1g0381911 RchiOBHm_Chr2g0161591
rosa_laevigata	RLG00000004821
rosa_multiflora	Rmu_co7963376.1_g000001 Rmu_co8294873.1_g000001 Rmu_co8426875.1_g000001 Rmu_co8431857.1_g000001 Rmu_sc0001742.1_g000002 Rmu_sc0002400.1_g000001 Rmu_sc0008051.1_g000001
rosa_samantha	Rh1BG412500 Rh1CG427300 Rh1DG444800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AasI	GACNNNNNNGTC	1 cut(s)	56
AatII	GACGTC	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccIII	TCCGGA	1 cut(s)	291
AclWI	GGATC	2 cut(s)	289, 302
AcoI	YGGCCR	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	231, 377
AfiI	CCNNNNNNNGG	4 cut(s)	85, 262, 291, 305
AgsI	TTSAA	1 cut(s)	340
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	289, 302
Aor13HI	TCCGGA	1 cut(s)	291
AoxI	GGCC	3 cut(s)	145, 253, 264
AspA2I	CCTAGG	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	123, 332
AsuC2I	CCSGG	2 cut(s)	300, 330
AsuHPI	GGTGA	3 cut(s)	100, 208, 217
AvaII	GGWCC	2 cut(s)	123, 332
AvrII	CCTAGG	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	51
BcnI	CCSGG	2 cut(s)	300, 330
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	193
BlnI	CCTAGG	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	300, 330
Bme18I	GGWCC	2 cut(s)	123, 332
BmgT120I	GGNCC	2 cut(s)	123, 332
BmiI	GGNNCC	3 cut(s)	140, 296, 334
BmrFI	CCNGG	2 cut(s)	300, 330
BpiI	GAAGAC	1 cut(s)	51
BpuMI	CCSGG	2 cut(s)	300, 330
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	142, 298, 328
BsaWI	WCCGGW	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 262, 291, 305
Bse1I	ACTGG	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	142, 298, 328
BseLI	CCNNNNNNNGG	4 cut(s)	85, 262, 291, 305
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	2 cut(s)	140, 155
BshFI	GGCC	3 cut(s)	147, 255, 266
BsiSI	CCGG	3 cut(s)	292, 300, 330
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	4 cut(s)	85, 262, 291, 305
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	3 cut(s)	147, 255, 266
Bsp13I	TCCGGA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	294, 360
BspANI	GGCC	3 cut(s)	147, 255, 266
BspCNI	CTCAG	1 cut(s)	304
BspEI	TCCGGA	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	140, 296, 334
BspPI	GGATC	2 cut(s)	289, 302
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	3 cut(s)	142, 298, 328
BssMI	GATC	2 cut(s)	294, 360
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	142
Bst4CI	ACNGT	5 cut(s)	10, 88, 229, 375, 407
BstACI	GRCGYC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	297, 363
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	294, 360
BstNSI	RCATGY	1 cut(s)	356
BstPI	GGTNACC	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	298, 328
BstSFI	CTRYAG	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	147, 255, 266
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	123, 332
Csp6I	GTAC	2 cut(s)	230, 376
CviAII	CATG	2 cut(s)	262, 353
CviJI	RGCY	6 cut(s)	26, 147, 205, 255, 266, 309
CviKI_1	RGCY	6 cut(s)	26, 147, 205, 255, 266, 309
CviQI	GTAC	2 cut(s)	230, 376
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	296, 362
DpnII	GATC	2 cut(s)	294, 360
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	142
Eco147I	AGGCCT	1 cut(s)	147
Eco47I	GGWCC	2 cut(s)	123, 332
Eco91I	GGTNACC	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	2 cut(s)	265, 356
FaiI	YATR	5 cut(s)	14, 251, 263, 354, 396
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	261, 352
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	160
HaeIII	GGCC	3 cut(s)	147, 255, 266
HapII	CCGG	3 cut(s)	292, 300, 330
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	265, 356
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	270, 381
HpaII	CCGG	3 cut(s)	292, 300, 330
HphI	GGTGA	3 cut(s)	100, 208, 217
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	84, 131, 313
Hpy188III	TCNNGA	2 cut(s)	121, 292
Hpy8I	GTNNAC	1 cut(s)	403
Hpy99I	CGWCG	6 cut(s)	53, 56, 59, 71, 101, 104
HpyAV	CCTTC	2 cut(s)	136, 346
HpyCH4III	ACNGT	5 cut(s)	10, 88, 229, 375, 407
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	265, 356
HspAI	GCGC	1 cut(s)	159
Kpn2I	TCCGGA	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	294, 360
LmnI	GCTCC	2 cut(s)	31, 249
LpnPI	CCDG	8 cut(s)	106, 169, 194, 280, 305, 313, 335, 343
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	296, 362
MboI	GATC	2 cut(s)	294, 360
MboII	GAAGA	2 cut(s)	56, 178
MflI	RGATCY	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	7 cut(s)	122, 158, 161, 173, 176, 284, 307
Mox20I	TGGCCA	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	3 cut(s)	292, 300, 330
MspR9I	CCNGG	2 cut(s)	300, 330
NciI	CCSGG	2 cut(s)	300, 330
NdeII	GATC	2 cut(s)	294, 360
NlaIII	CATG	2 cut(s)	265, 356
NlaIV	GGNNCC	3 cut(s)	140, 296, 334
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	3 cut(s)	48, 54, 63
PfeI	GAWTC	2 cut(s)	270, 381
PflFI	GACNNNGTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	262
PsiI	TTATAA	1 cut(s)	396
PspEI	GGTNACC	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	140, 296, 334
PspPI	GGNCC	2 cut(s)	123, 332
PsuI	RGATCY	1 cut(s)	294
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	2 cut(s)	231, 377
RsaNI	GTAC	2 cut(s)	230, 376
Sau3AI	GATC	2 cut(s)	294, 360
Sau96I	GGNCC	2 cut(s)	123, 332
ScrFI	CCNGG	2 cut(s)	300, 330
SetI	ASST	4 cut(s)	28, 60, 128, 318
SfcI	CTRYAG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	123, 332
Sse9I	AATT	1 cut(s)	17
SseBI	AGGCCT	1 cut(s)	147
SspI	AATATT	1 cut(s)	392
SspMI	CTAG	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	298, 328
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	5 cut(s)	10, 88, 229, 375, 407
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	42, 69
TasI	AATT	1 cut(s)	17
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	270, 381
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	68
Tth111I	GACNNNGTC	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	123, 332
XceI	RCATGY	1 cut(s)	356
XmaJI	CCTAGG	1 cut(s)	142
XspI	CTAG	1 cut(s)	143
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.