Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8294873.1

Orthogroup ID

OG0006947

Physical Location & Seq

Genomic Coordinates Forward (+)

113 .. 776

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8294873.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggcgtcgaaagtcgatcccgagaagaccaacggcgctgactccgaggaggagacccgaacatgcgaaatcgaagaggtggcgctggtggtgccggagaccgacgatccttcactgccggtgatgacattccggacttggttcctgggcatcacctcatgcaccatcctcatattcctcaacacctttttcagctaccgcactcagccccttgccatttccgccattctcatgcaaatcgctgtcttgcccatcggaaagttcatggccaaaattctgcccaacaaggacttcaatcttatgggctttaagttcaacttgaatccggggcccttcaacatgaaggagcatgtcgtcatcaccattttcgccaattgtgggttctcaggtggcggaggtgatgcctattccaccggtgccatcaccgtcatgaaggcctattaccaccagagcttgagttttctttgtggcctcttcatcgtcttgacctctcaggagcagatagactgtggggttgctcttctttgtttggacgatgagtgttcaaccgccgaggttgacagaatgctctgcattaatctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009506 GO:0009987 GO:0010232 GO:0010233 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030054 GO:0032501 GO:0034220 GO:0042592 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0098655 GO:0098771 GO:1990388

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

194

Amino Acids

21.34

Weight (kDa)

4.53

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400
malus_domestica	MD10G1056600.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1
pyrus_communis	pycom10g04350
rosa_chinensis	RchiOBHm_Chr1g0381911 RchiOBHm_Chr2g0161591
rosa_laevigata	RLG00000004821
rosa_multiflora	Rmu_co7963376.1_g000001 Rmu_co8294873.1_g000001 Rmu_co8426875.1_g000001 Rmu_co8431857.1_g000001 Rmu_sc0001742.1_g000002 Rmu_sc0002400.1_g000001 Rmu_sc0008051.1_g000001
rosa_samantha	Rh1BG412500 Rh1CG427300 Rh1DG444800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	91, 416
AccIII	TCCGGA	1 cut(s)	132
AciI	CCGC	4 cut(s)	199, 222, 393, 549
AclWI	GGATC	2 cut(s)	11, 101
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	5 cut(s)	295, 316, 322, 337, 546
AjnI	CCWGG	1 cut(s)	144
AjuI	GAANNNNNNNTTGG	4 cut(s)	275, 307, 365, 397
AluBI	AGCT	2 cut(s)	195, 453
AluI	AGCT	2 cut(s)	195, 453
Alw26I	GTCTC	2 cut(s)	47, 92
AlwI	GGATC	2 cut(s)	11, 101
Ama87I	CYCGRG	1 cut(s)	20
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	4 cut(s)	267, 329, 435, 469
ApaI	GGGCCC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	273
AseI	ATTAAT	1 cut(s)	576
AsiGI	ACCGGT	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	38, 85
AspS9I	GGNCC	2 cut(s)	329, 330
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	5 cut(s)	133, 145, 352, 410, 415
AvaI	CYCGRG	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	269
BanI	GGYRCC	2 cut(s)	91, 416
BanII	GRGCYC	1 cut(s)	333
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BbsI	GAAGAC	1 cut(s)	32
BccI	CCATC	3 cut(s)	173, 260, 428
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	47, 92
BfoI	RGCGCY	2 cut(s)	39, 86
Bme1390I	CCNGG	2 cut(s)	146, 327
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	2 cut(s)	329, 330
BmiI	GGNNCC	5 cut(s)	93, 143, 330, 331, 418
BmrFI	CCNGG	2 cut(s)	146, 327
BmsI	GCATC	2 cut(s)	159, 391
BpiI	GAAGAC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	47, 92
BsaJI	CCNNGG	4 cut(s)	45, 145, 326, 552
BsaWI	WCCGGW	2 cut(s)	132, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse118I	RCCGGY	2 cut(s)	118, 413
BseAI	TCCGGA	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	4 cut(s)	45, 145, 326, 552
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	218, 399, 506
BseRI	GAGGAG	2 cut(s)	62, 65
BseSI	GKGCMC	1 cut(s)	333
BshFI	GGCC	4 cut(s)	269, 331, 437, 471
BshNI	GGYRCC	2 cut(s)	91, 416
BshTI	ACCGGT	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	5 cut(s)	95, 119, 133, 326, 414
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	2 cut(s)	47, 92
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	4 cut(s)	269, 331, 437, 471
Bso31I	GGTCTC	2 cut(s)	47, 92
BsoBI	CYCGRG	1 cut(s)	20
Bsp120I	GGGCCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp13I	TCCGGA	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	16, 106
BspACI	CCGC	4 cut(s)	199, 222, 393, 549
BspANI	GGCC	4 cut(s)	269, 331, 437, 471
BspCNI	CTCAG	3 cut(s)	217, 398, 505
BspEI	TCCGGA	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	5 cut(s)	93, 143, 330, 331, 418
BspPI	GGATC	2 cut(s)	11, 101
BspQI	GCTCTTC	1 cut(s)	525
BspT107I	GGYRCC	2 cut(s)	91, 416
BspTNI	GGTCTC	2 cut(s)	47, 92
BsrFI	RCCGGY	2 cut(s)	118, 413
BssAI	RCCGGY	2 cut(s)	118, 413
BssECI	CCNNGG	4 cut(s)	45, 145, 326, 552
BssMI	GATC	2 cut(s)	16, 106
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	427, 509
Bst6I	CTCTTC	3 cut(s)	69, 479, 525
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	3 cut(s)	204, 385, 492
BstF5I	GGATG	1 cut(s)	165
BstH2I	RGCGCY	2 cut(s)	39, 86
BstHHI	GCGC	2 cut(s)	38, 85
BstKTI	GATC	2 cut(s)	19, 109
BstMAI	GTCTC	2 cut(s)	47, 92
BstMBI	GATC	2 cut(s)	16, 106
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 221
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	2 cut(s)	66, 353
BstSCI	CCNGG	2 cut(s)	144, 325
BstSLI	GKGCMC	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	4 cut(s)	269, 331, 437, 471
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	2 cut(s)	38, 85
Cfr10I	RCCGGY	2 cut(s)	118, 413
Cfr13I	GGNCC	2 cut(s)	329, 330
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	7 cut(s)	63, 159, 232, 265, 340, 350, 430
CviJI	RGCY	8 cut(s)	195, 208, 269, 306, 331, 437, 453, 471
CviKI_1	RGCY	8 cut(s)	195, 208, 269, 306, 331, 437, 453, 471
DdeI	CTNAG	3 cut(s)	204, 385, 492
DpnI	GATC	2 cut(s)	18, 108
DpnII	GATC	2 cut(s)	16, 106
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	3 cut(s)	69, 479, 525
EarI	CTCTTC	3 cut(s)	69, 479, 525
EciI	GGCGGA	2 cut(s)	211, 408
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	47, 92
Eco88I	CYCGRG	1 cut(s)	20
EcoO109I	RGGNCCY	2 cut(s)	329, 330
EcoRII	CCWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	7 cut(s)	66, 162, 235, 268, 343, 353, 433
FaiI	YATR	9 cut(s)	64, 160, 173, 233, 266, 302, 341, 351, 431
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	7 cut(s)	62, 158, 231, 264, 339, 349, 429
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	333
GlaI	GCGC	2 cut(s)	37, 84
HaeII	RGCGCY	2 cut(s)	39, 86
HaeIII	GGCC	4 cut(s)	269, 331, 437, 471
HapII	CCGG	5 cut(s)	95, 119, 133, 326, 414
HhaI	GCGC	2 cut(s)	38, 85
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	66, 162, 235, 268, 343, 353, 433
Hin6I	GCGC	2 cut(s)	36, 83
HinP1I	GCGC	2 cut(s)	36, 83
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	2 cut(s)	41, 322
HpaII	CCGG	5 cut(s)	95, 119, 133, 326, 414
HphI	GGTGA	5 cut(s)	133, 145, 352, 410, 415
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	2 cut(s)	46, 257
Hpy188III	TCNNGA	5 cut(s)	20, 133, 430, 484, 494
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	2 cut(s)	10, 107
HpyAV	CCTTC	4 cut(s)	120, 337, 343, 427
HpyCH4III	ACNGT	2 cut(s)	427, 509
HpyCH4V	TGCA	3 cut(s)	162, 235, 573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 221
HpyF3I	CTNAG	3 cut(s)	204, 385, 492
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	66, 162, 235, 268, 343, 353, 433
HspAI	GCGC	2 cut(s)	36, 83
Kpn2I	TCCGGA	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	16, 106
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	2 cut(s)	346, 496
LweI	GCATC	2 cut(s)	159, 391
MalI	GATC	2 cut(s)	18, 108
MboI	GATC	2 cut(s)	16, 106
MboII	GAAGA	4 cut(s)	37, 86, 466, 512
MfeI	CAATTG	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	2 cut(s)	273, 373
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	35
Mox20I	TGGCCA	1 cut(s)	269
MroI	TCCGGA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	2 cut(s)	309, 576
MslI	CAYNNNNRTG	2 cut(s)	230, 428
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	5 cut(s)	95, 119, 133, 326, 414
MspR9I	CCNGG	2 cut(s)	146, 327
MunI	CAATTG	1 cut(s)	373
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	91, 221
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	16, 106
NlaIII	CATG	7 cut(s)	66, 162, 235, 268, 343, 353, 433
NlaIV	GGNNCC	5 cut(s)	93, 143, 330, 331, 418
NmeAIII	GCCGAG	1 cut(s)	577
NspI	RCATGY	2 cut(s)	66, 353
PagI	TCATGA	1 cut(s)	429
PceI	AGGCCT	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	525
PctI	GAATGC	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	322
PinAI	ACCGGT	1 cut(s)	413
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	5 cut(s)	93, 143, 330, 331, 418
PspOMI	GGGCCC	1 cut(s)	329
PspPI	GGNCC	2 cut(s)	329, 330
RseI	CAYNNNNRTG	2 cut(s)	230, 428
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	309, 576
Sau3AI	GATC	2 cut(s)	16, 106
Sau96I	GGNCC	2 cut(s)	329, 330
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	146, 327
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	9 cut(s)	81, 158, 188, 197, 391, 400, 455, 491, 558
SfaNI	GCATC	2 cut(s)	159, 391
SgrAI	CRCCGGYG	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	230, 428
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	2 cut(s)	273, 373
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	4 cut(s)	199, 222, 393, 549
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	144, 325
TaaI	ACNGT	2 cut(s)	427, 509
TaqI	TCGA	3 cut(s)	8, 15, 72
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	2 cut(s)	273, 373
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	309, 576
Tru9I	TTAA	2 cut(s)	309, 576
TscAI	CASTG	1 cut(s)	120
TspDTI	ATGAA	4 cut(s)	253, 356, 446, 466
TspRI	CASTG	1 cut(s)	120
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	2 cut(s)	66, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.