Rh1CG427300

OPT oligopeptide transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006947
Physical Location & Seq
Forward (+)
68531427 .. 68532332
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG427300.1

Sequence Viewer

Length: 717 bp
ATGGAGATAGATAATAGTAGTGCTGTAAAGATGGAGCAGGTCCAGCTCCAGCAGGAAGATGAGCGCTCTTCCATTGAGCAAGTGGAGTTGACAGTGCCGAAAACCGATGACCCCACGTTGCCGGTGCTCACATTCCGAACGTGGGTTCTGGGTTTGGTCTCATGTGTCCTTCTCTCCTTTGTGAACCAGTTTTTCTGTTACAGGACTCAGCCGTTTACTGTGACATCCATGAGTGCACAGATTGCTGTCGTGCCAATCGAATATTTCATGGCGAGAGTGCTGCCCACGCGCCGTTTTTTCCAAGATACTCGGTTTGAGTTCACCATGAATCCGGGGCCCTTTAATGTCAAGGAACATGTTTTGATCACCATATTTGCAAATTGCGGGGGTGGAACTGTTTATGCTACTCATATCTTGACTGCTGTTAAGATCTACTACAAGAGGAAGCTCACTTTTCTTCCTGCCTTTATTGTTATGCTCACCACTCAGGTGTTGGGGTTTGGTTGGGCTGGAATTTTCAGAAAATATCTGGTTGAGCCAGAGAAGATGTGGTGGCCCATTATTCTGGTTCAGGTTTCTTTGTTCAGTGCTCTGCATGAGAAGAGCAAGAGGCCTAAAGGAAGCATGACTCGTACCCAGTTCTTCCTCCTAGTGATGATTGCCAGTTTTGCATACTATATCTTCCCCGGCTATCTATTCACTATGCTAAGTTGCTAA

Protein Analysis

238

Amino Acids

27.46

Weight (kDa)

9.03

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 43 - 237 1.2e-52 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AccII CGCG 1 cut(s) 289
AciI CCGC 1 cut(s) 384
AcsI RAATTY 1 cut(s) 513
AfaI GTAC 1 cut(s) 634
AfeI AGCGCT 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 355
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 2 cut(s) 46, 448
AluI AGCT 2 cut(s) 46, 448
Alw21I GWGCWC 3 cut(s) 129, 238, 592
Alw26I GTCTC 1 cut(s) 163
Alw44I GTGCAC 1 cut(s) 234
Aor51HI AGCGCT 1 cut(s) 65
AoxI GGCC 3 cut(s) 335, 554, 611
ApaI GGGCCC 1 cut(s) 339
ApaLI GTGCAC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 513
AspLEI GCGC 2 cut(s) 66, 291
AspS9I GGNCC 4 cut(s) 40, 335, 336, 555
AsuC2I CCSGG 2 cut(s) 333, 687
AsuHPI GGTGA 3 cut(s) 313, 358, 472
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 2 cut(s) 238, 339
BanII GRGCYC 1 cut(s) 339
Bbv12I GWGCWC 3 cut(s) 129, 238, 592
BbvI GCAGC 1 cut(s) 267
BccI CCATC 1 cut(s) 25
BceAI ACGGC 2 cut(s) 196, 276
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 2 cut(s) 333, 687
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 650
BfoI RGCGCY 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 429
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 2 cut(s) 333, 687
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 4 cut(s) 40, 335, 336, 555
BmiI GGNNCC 2 cut(s) 336, 337
BmrFI CCNGG 2 cut(s) 333, 687
BmrI ACTGGG 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 631
BpmI CTGGAG 1 cut(s) 32
BpuMI CCSGG 2 cut(s) 333, 687
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 332, 685
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 3 cut(s) 187, 637, 663
BseDI CCNNGG 2 cut(s) 332, 685
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 221, 500
BseNI ACTGG 3 cut(s) 187, 637, 663
BseSI GKGCMC 2 cut(s) 238, 339
BseXI GCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 289
BshFI GGCC 3 cut(s) 337, 556, 613
BsiHKAI GWGCWC 3 cut(s) 129, 238, 592
BsiSI CCGG 3 cut(s) 122, 332, 687
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 3 cut(s) 337, 556, 613
Bso31I GGTCTC 1 cut(s) 163
Bsp120I GGGCCC 1 cut(s) 335
Bsp1286I GDGCHC 4 cut(s) 129, 238, 339, 592
Bsp143I GATC 2 cut(s) 363, 429
BspACI CCGC 1 cut(s) 384
BspANI GGCC 3 cut(s) 337, 556, 613
BspCNI CTCAG 2 cut(s) 220, 499
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 336, 337
BspMI ACCTGC 1 cut(s) 28
BspQI GCTCTTC 2 cut(s) 73, 596
BspTNI GGTCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 3 cut(s) 187, 637, 663
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 332, 685
BssMI GATC 2 cut(s) 363, 429
Bst4CI ACNGT 3 cut(s) 94, 220, 397
Bst6I CTCTTC 2 cut(s) 73, 596
BstAPI GCANNNNNTGC 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 207, 486, 707
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 2 cut(s) 66, 291
BstKTI GATC 2 cut(s) 366, 432
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 2 cut(s) 363, 429
BstMWI GCNNNNNNNGC 4 cut(s) 43, 242, 286, 668
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 331, 685
BstSLI GKGCMC 2 cut(s) 238, 339
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 429
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 3 cut(s) 337, 556, 613
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 99, 592
BveI ACCTGC 1 cut(s) 28
CfoI GCGC 2 cut(s) 66, 291
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 4 cut(s) 40, 335, 336, 555
Csp6I GTAC 1 cut(s) 633
CviAII CATG 7 cut(s) 162, 229, 268, 325, 356, 596, 625
CviJI RGCY 9 cut(s) 46, 211, 337, 448, 509, 538, 556, 613, 690
CviKI_1 RGCY 9 cut(s) 46, 211, 337, 448, 509, 538, 556, 613, 690
CviQI GTAC 1 cut(s) 633
DdeI CTNAG 3 cut(s) 207, 486, 707
DpnI GATC 2 cut(s) 365, 431
DpnII GATC 2 cut(s) 363, 429
Eam1104I CTCTTC 2 cut(s) 73, 596
EarI CTCTTC 2 cut(s) 73, 596
Eco147I AGGCCT 1 cut(s) 613
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 40
Eco47III AGCGCT 1 cut(s) 65
EcoO109I RGGNCCY 2 cut(s) 335, 336
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 7 cut(s) 165, 232, 271, 328, 359, 599, 628
FatI CATG 7 cut(s) 161, 228, 267, 324, 355, 595, 624
FauI CCCGC 1 cut(s) 377
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 1 cut(s) 650
GlaI GCGC 2 cut(s) 65, 290
GluI GCNGC 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 3 cut(s) 337, 556, 613
HapII CCGG 3 cut(s) 122, 332, 687
HhaI GCGC 2 cut(s) 66, 291
Hin1II CATG 7 cut(s) 165, 232, 271, 328, 359, 599, 628
Hin6I GCGC 2 cut(s) 64, 289
HinP1I GCGC 2 cut(s) 64, 289
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 3 cut(s) 205, 328, 628
HpaII CCGG 3 cut(s) 122, 332, 687
HphI GGTGA 3 cut(s) 313, 358, 472
Hpy166II GTNNAC 5 cut(s) 90, 184, 216, 236, 321
Hpy188I TCNGA 2 cut(s) 137, 521
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 5 cut(s) 90, 184, 216, 236, 321
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 3 cut(s) 94, 220, 397
HpyCH4IV ACGT 2 cut(s) 116, 140
HpyCH4V TGCA 4 cut(s) 236, 377, 595, 671
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 242, 286, 668
HpyF3I CTNAG 3 cut(s) 207, 486, 707
HpySE526I ACGT 2 cut(s) 116, 140
Hsp92II CATG 7 cut(s) 165, 232, 271, 328, 359, 599, 628
HspAI GCGC 2 cut(s) 64, 289
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 2 cut(s) 363, 429
LguI GCTCTTC 2 cut(s) 73, 596
LmnI GCTCC 2 cut(s) 34, 51
Lsp1109I GCAGC 1 cut(s) 267
MaeI CTAG 1 cut(s) 650
MaeII ACGT 2 cut(s) 116, 140
MaeIII GTNAC 2 cut(s) 197, 220
MalI GATC 2 cut(s) 365, 431
MboI GATC 2 cut(s) 363, 429
MboII GAAGA 7 cut(s) 60, 68, 449, 556, 613, 634, 673
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 4 cut(s) 129, 238, 339, 592
MluCI AATT 2 cut(s) 379, 513
MlyI GAGTC 2 cut(s) 199, 622
MnlI CCTC 3 cut(s) 435, 603, 656
MseI TTAA 2 cut(s) 342, 426
MslI CAYNNNNRTG 1 cut(s) 488
MspI CCGG 3 cut(s) 122, 332, 687
MspR9I CCNGG 2 cut(s) 333, 687
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 4 cut(s) 43, 242, 286, 668
NciI CCSGG 2 cut(s) 333, 687
NdeII GATC 2 cut(s) 363, 429
NlaIII CATG 7 cut(s) 165, 232, 271, 328, 359, 599, 628
NlaIV GGNNCC 2 cut(s) 336, 337
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 359
OliI CACNNNNGTG 1 cut(s) 488
PceI AGGCCT 1 cut(s) 613
PciI ACATGT 1 cut(s) 355
PciSI GCTCTTC 2 cut(s) 73, 596
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 1 cut(s) 282
PleI GAGTC 2 cut(s) 199, 622
PpsI GAGTC 2 cut(s) 199, 622
PscI ACATGT 1 cut(s) 355
PspN4I GGNNCC 2 cut(s) 336, 337
PspOMI GGGCCC 1 cut(s) 335
PspPI GGNCC 4 cut(s) 40, 335, 336, 555
PsuI RGATCY 1 cut(s) 429
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
RseI CAYNNNNRTG 1 cut(s) 488
SapI GCTCTTC 2 cut(s) 73, 596
SaqAI TTAA 2 cut(s) 342, 426
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 2 cut(s) 363, 429
Sau96I GGNCC 4 cut(s) 40, 335, 336, 555
SchI GAGTC 2 cut(s) 199, 622
ScrFI CCNGG 2 cut(s) 333, 687
SduI GDGCHC 4 cut(s) 129, 238, 339, 592
SetI ASST 7 cut(s) 42, 48, 119, 143, 450, 492, 576
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 488
Sse9I AATT 2 cut(s) 379, 513
SseBI AGGCCT 1 cut(s) 613
SsiI CCGC 1 cut(s) 384
SspI AATATT 1 cut(s) 263
SspMI CTAG 1 cut(s) 650
StuI AGGCCT 1 cut(s) 613
StyD4I CCNGG 2 cut(s) 331, 685
TaaI ACNGT 3 cut(s) 94, 220, 397
TaiI ACGT 2 cut(s) 119, 143
TaqI TCGA 1 cut(s) 258
TasI AATT 2 cut(s) 379, 513
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 342, 426
Tru9I TTAA 2 cut(s) 342, 426
TscAI CASTG 2 cut(s) 99, 592
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 256, 341
TspRI CASTG 2 cut(s) 99, 592
VneI GTGCAC 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 513
XceI RCATGY 1 cut(s) 359
XcmI CCANNNNNNNNNTGG 3 cut(s) 79, 490, 546
XspI CTAG 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.